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Spg038790 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg038790
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionprotein BOBBER 1
Genome locationscaffold12:1610707..1611330
RNA-Seq ExpressionSpg038790
SyntenySpg038790
Gene Ontology termsGO:0006457 - protein folding (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0051082 - unfolded protein binding (molecular function)
InterPro domainsIPR037898 - NudC family


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_002513546.2 protein BOBBER 1 isoform X1 [Ricinus communis]2.3e-1295.24Show/hide
Query:  VQFDQRQKSMGLPTSDEMQKQEILKKFMAEHPEMDFSRAKIS
        + FDQRQKSMGLPTSDEMQKQEILKKFMAEHPEMDFSRAKIS
Subjt:  VQFDQRQKSMGLPTSDEMQKQEILKKFMAEHPEMDFSRAKIS
XP_006478057.1 protein BOBBER 1 [Citrus sinensis]2.3e-1295.24Show/hide
Query:  VQFDQRQKSMGLPTSDEMQKQEILKKFMAEHPEMDFSRAKIS
        + FDQRQKSMGLPTSDEMQKQEILKKFMAEHPEMDFSRAKIS
Subjt:  VQFDQRQKSMGLPTSDEMQKQEILKKFMAEHPEMDFSRAKIS
XP_010266523.1 PREDICTED: protein BOBBER 1 [Nelumbo nucifera]2.3e-1295.24Show/hide
Query:  VQFDQRQKSMGLPTSDEMQKQEILKKFMAEHPEMDFSRAKIS
        + FDQRQKSMGLPTSDEMQKQEILKKFMAEHPEMDFSRAKIS
Subjt:  VQFDQRQKSMGLPTSDEMQKQEILKKFMAEHPEMDFSRAKIS
XP_027103570.1 protein BOBBER 1-like [Coffea arabica]2.3e-1295.24Show/hide
Query:  VQFDQRQKSMGLPTSDEMQKQEILKKFMAEHPEMDFSRAKIS
        + FDQRQKSMGLPTSDEMQKQEILKKFMAEHPEMDFSRAKIS
Subjt:  VQFDQRQKSMGLPTSDEMQKQEILKKFMAEHPEMDFSRAKIS
XP_031394983.1 protein BOBBER 1 [Punica granatum]2.3e-1295.24Show/hide
Query:  VQFDQRQKSMGLPTSDEMQKQEILKKFMAEHPEMDFSRAKIS
        + FDQRQKSMGLPTSDEMQKQEILKKFMAEHPEMDFSRAKIS
Subjt:  VQFDQRQKSMGLPTSDEMQKQEILKKFMAEHPEMDFSRAKIS
TrEMBL top hitse value%identityAlignment
A0A068U931 CS domain-containing protein1.1e-1295.24Show/hide
Query:  VQFDQRQKSMGLPTSDEMQKQEILKKFMAEHPEMDFSRAKIS
        + FDQRQKSMGLPTSDEMQKQEILKKFMAEHPEMDFSRAKIS
Subjt:  VQFDQRQKSMGLPTSDEMQKQEILKKFMAEHPEMDFSRAKIS
A0A1U8AHB1 protein BOBBER 11.1e-1295.24Show/hide
Query:  VQFDQRQKSMGLPTSDEMQKQEILKKFMAEHPEMDFSRAKIS
        + FDQRQKSMGLPTSDEMQKQEILKKFMAEHPEMDFSRAKIS
Subjt:  VQFDQRQKSMGLPTSDEMQKQEILKKFMAEHPEMDFSRAKIS
A0A218X4J3 protein BOBBER 11.1e-1295.24Show/hide
Query:  VQFDQRQKSMGLPTSDEMQKQEILKKFMAEHPEMDFSRAKIS
        + FDQRQKSMGLPTSDEMQKQEILKKFMAEHPEMDFSRAKIS
Subjt:  VQFDQRQKSMGLPTSDEMQKQEILKKFMAEHPEMDFSRAKIS
A0A6P3ZG88 protein BOBBER 11.1e-1295.24Show/hide
Query:  VQFDQRQKSMGLPTSDEMQKQEILKKFMAEHPEMDFSRAKIS
        + FDQRQKSMGLPTSDEMQKQEILKKFMAEHPEMDFSRAKIS
Subjt:  VQFDQRQKSMGLPTSDEMQKQEILKKFMAEHPEMDFSRAKIS
A0A6P6VM71 protein BOBBER 1-like1.1e-1295.24Show/hide
Query:  VQFDQRQKSMGLPTSDEMQKQEILKKFMAEHPEMDFSRAKIS
        + FDQRQKSMGLPTSDEMQKQEILKKFMAEHPEMDFSRAKIS
Subjt:  VQFDQRQKSMGLPTSDEMQKQEILKKFMAEHPEMDFSRAKIS
SwissProt top hitse value%identityAlignment
O35685 Nuclear migration protein nudC1.2e-1176.19Show/hide
Query:  VQFDQRQKSMGLPTSDEMQKQEILKKFMAEHPEMDFSRAKIS
        + +DQRQKSMGLPTSDE +KQEILKKFM +HPEMDFS+AK +
Subjt:  VQFDQRQKSMGLPTSDEMQKQEILKKFMAEHPEMDFSRAKIS
Q5ZIN1 Nuclear migration protein nudC2.0e-1173.81Show/hide
Query:  VQFDQRQKSMGLPTSDEMQKQEILKKFMAEHPEMDFSRAKIS
        + +DQRQKSMGLPTSDE +KQ+ILKKFM +HPEMDFS+AK +
Subjt:  VQFDQRQKSMGLPTSDEMQKQEILKKFMAEHPEMDFSRAKIS
Q63525 Nuclear migration protein nudC1.2e-1176.19Show/hide
Query:  VQFDQRQKSMGLPTSDEMQKQEILKKFMAEHPEMDFSRAKIS
        + +DQRQKSMGLPTSDE +KQEILKKFM +HPEMDFS+AK +
Subjt:  VQFDQRQKSMGLPTSDEMQKQEILKKFMAEHPEMDFSRAKIS
Q9LV09 Protein BOBBER 13.2e-1278.57Show/hide
Query:  VQFDQRQKSMGLPTSDEMQKQEILKKFMAEHPEMDFSRAKIS
        + FDQRQK MGLPTS+E+QKQEILKKFM+EHPEMDFS AK +
Subjt:  VQFDQRQKSMGLPTSDEMQKQEILKKFMAEHPEMDFSRAKIS
Q9Y266 Nuclear migration protein nudC1.2e-1176.19Show/hide
Query:  VQFDQRQKSMGLPTSDEMQKQEILKKFMAEHPEMDFSRAKIS
        + +DQRQKSMGLPTSDE +KQEILKKFM +HPEMDFS+AK +
Subjt:  VQFDQRQKSMGLPTSDEMQKQEILKKFMAEHPEMDFSRAKIS
Arabidopsis top hitse value%identityAlignment
AT4G27890.1 HSP20-like chaperones superfamily protein6.7e-1064.29Show/hide
Query:  VQFDQRQKSMGLPTSDEMQKQEILKKFMAEHPEMDFSRAKIS
        + FDQRQK MGLP SDE++K+++LKKFMA++P MDFS AK +
Subjt:  VQFDQRQKSMGLPTSDEMQKQEILKKFMAEHPEMDFSRAKIS
AT5G53400.1 HSP20-like chaperones superfamily protein2.2e-1378.57Show/hide
Query:  VQFDQRQKSMGLPTSDEMQKQEILKKFMAEHPEMDFSRAKIS
        + FDQRQK MGLPTS+E+QKQEILKKFM+EHPEMDFS AK +
Subjt:  VQFDQRQKSMGLPTSDEMQKQEILKKFMAEHPEMDFSRAKIS

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTGATTATGCCTTTTGGTCTCTTGTTATTCAATGGGTGGGATCACTGCAGTTGTTAGTCAATTCATTTTTCTCTGACTGTTTTGGAACATTTGTACAGTTCGATCA
AAGGCAGAAGTCTATGGGACTCCCAACCAGTGATGAGATGCAGAAGCAAGAGATTCTGAAGAAGTTCATGGCTGAGCATCCGGAGATGGACTTTTCAAGGGCAAAGATAT
CATAA
mRNA sequenceShow/hide mRNA sequence
ATGCCTGATTATGCCTTTTGGTCTCTTGTTATTCAATGGGTGGGATCACTGCAGTTGTTAGTCAATTCATTTTTCTCTGACTGTTTTGGAACATTTGTACAGTTCGATCA
AAGGCAGAAGTCTATGGGACTCCCAACCAGTGATGAGATGCAGAAGCAAGAGATTCTGAAGAAGTTCATGGCTGAGCATCCGGAGATGGACTTTTCAAGGGCAAAGATAT
CATAA
Protein sequenceShow/hide protein sequence
MPDYAFWSLVIQWVGSLQLLVNSFFSDCFGTFVQFDQRQKSMGLPTSDEMQKQEILKKFMAEHPEMDFSRAKIS