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Spg038808 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg038808
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionstructure-specific endonuclease subunit slx1
Genome locationscaffold12:5122550..5124623
RNA-Seq ExpressionSpg038808
SyntenySpg038808
Gene Ontology termsGO:0000724 - double-strand break repair via homologous recombination (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0033557 - Slx1-Slx4 complex (cellular component)
GO:0008821 - crossover junction endodeoxyribonuclease activity (molecular function)
GO:0017108 - 5'-flap endonuclease activity (molecular function)
InterPro domainsIPR000305 - GIY-YIG endonuclease
IPR035901 - GIY-YIG endonuclease superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7018060.1 slx1, partial [Cucurbita argyrosperma subsp. argyrosperma]5.2e-4385.05Show/hide
Query:  MRLLSQTFRCQKPPISNPEVSKPSSSSTKDPSPATLIVKSKPKPKQWCAYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWVCACTIH
        MRLLSQTFR QK PIS+PEVSK SSSSTK P   TLIVKS+P+PK+WC YLIISSN PIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPW+CAC IH
Subjt:  MRLLSQTFRCQKPPISNPEVSKPSSSSTKDPSPATLIVKSKPKPKQWCAYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWVCACTIH

Query:  GFKDQSE
        GFKDQS+
Subjt:  GFKDQSE

XP_004151512.1 structure-specific endonuclease subunit SLX1 [Cucumis sativus]9.4e-4586.24Show/hide
Query:  MRLLSQTFRCQKPPISNPEVSKPSSSSTKDPSPATLIVKSKPKP--KQWCAYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWVCACT
        MRLLS TFRC KPPISNP +SK SSSS+KDP   TLIVKS+PKP  KQWC YLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPW+CACT
Subjt:  MRLLSQTFRCQKPPISNPEVSKPSSSSTKDPSPATLIVKSKPKP--KQWCAYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWVCACT

Query:  IHGFKDQSE
        IHGFKDQS+
Subjt:  IHGFKDQSE

XP_008461838.1 PREDICTED: structure-specific endonuclease subunit slx1 [Cucumis melo]1.6e-4486.11Show/hide
Query:  MRLLSQTFRCQKPPISNPEVSKPSSSSTKDPSPATLIVK-SKPKPKQWCAYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWVCACTI
        MRLLSQTFRCQKPPISNP + K SSSSTK P   TLIVK  +PKPKQWC YLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKAT+AGRPW+CACTI
Subjt:  MRLLSQTFRCQKPPISNPEVSKPSSSSTKDPSPATLIVK-SKPKPKQWCAYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWVCACTI

Query:  HGFKDQSE
        HGFKDQS+
Subjt:  HGFKDQSE

XP_038903985.1 structure-specific endonuclease subunit slx1 isoform X2 [Benincasa hispida]1.8e-4384.26Show/hide
Query:  MRLLSQTFRCQKPPISNPEVSKPSSSSTKDPSPATLIVKSKPKPKQWCAYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWVCACTIH
        MRLLSQTFR QKP  SN ++SK SSSSTKDP    LIVKS+PKPKQWC YLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATR GRPW+CACTIH
Subjt:  MRLLSQTFRCQKPPISNPEVSKPSSSSTKDPSPATLIVKSKPKPKQWCAYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWVCACTIH

Query:  GFKDQSEG
        GFKDQ +G
Subjt:  GFKDQSEG

XP_038903986.1 structure-specific endonuclease subunit slx1 isoform X3 [Benincasa hispida]6.1e-4482.88Show/hide
Query:  MRLLSQTFRCQKPPISNPEVSKPSSSSTKDPSPATLIVKSKPKPKQWCAYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWVCACTIH
        MRLLSQTFR QKP  SN ++SK SSSSTKDP    LIVKS+PKPKQWC YLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATR GRPW+CACTIH
Subjt:  MRLLSQTFRCQKPPISNPEVSKPSSSSTKDPSPATLIVKSKPKPKQWCAYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWVCACTIH

Query:  GFKDQSEGMHL
        GFKDQ +G  L
Subjt:  GFKDQSEGMHL

TrEMBL top hitse value%identityAlignment
A0A0A0LCZ9 GIY-YIG domain-containing protein4.6e-4586.24Show/hide
Query:  MRLLSQTFRCQKPPISNPEVSKPSSSSTKDPSPATLIVKSKPKP--KQWCAYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWVCACT
        MRLLS TFRC KPPISNP +SK SSSS+KDP   TLIVKS+PKP  KQWC YLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPW+CACT
Subjt:  MRLLSQTFRCQKPPISNPEVSKPSSSSTKDPSPATLIVKSKPKP--KQWCAYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWVCACT

Query:  IHGFKDQSE
        IHGFKDQS+
Subjt:  IHGFKDQSE

A0A1S3CFH5 structure-specific endonuclease subunit slx17.8e-4586.11Show/hide
Query:  MRLLSQTFRCQKPPISNPEVSKPSSSSTKDPSPATLIVK-SKPKPKQWCAYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWVCACTI
        MRLLSQTFRCQKPPISNP + K SSSSTK P   TLIVK  +PKPKQWC YLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKAT+AGRPW+CACTI
Subjt:  MRLLSQTFRCQKPPISNPEVSKPSSSSTKDPSPATLIVK-SKPKPKQWCAYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWVCACTI

Query:  HGFKDQSE
        HGFKDQS+
Subjt:  HGFKDQSE

A0A6J1F1V2 structure-specific endonuclease subunit slx12.5e-4385.05Show/hide
Query:  MRLLSQTFRCQKPPISNPEVSKPSSSSTKDPSPATLIVKSKPKPKQWCAYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWVCACTIH
        MRLLSQTFR QK PIS+PEVSK SSSSTK P   TLIVKS+P+PK+WC YLIISSN PIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPW+CAC IH
Subjt:  MRLLSQTFRCQKPPISNPEVSKPSSSSTKDPSPATLIVKSKPKPKQWCAYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWVCACTIH

Query:  GFKDQSE
        GFKDQS+
Subjt:  GFKDQSE

A0A6J1J559 structure-specific endonuclease subunit slx1 isoform X28.1e-4281.48Show/hide
Query:  MRLLSQTFRCQKPPISNPEVSKPSSSSTKDPSPATLIVKSKPKPKQWCAYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWVCACTIH
        MRLLSQTFR QK PIS+PEVSK SSSSTK P   TL +KS+P+ K+WC YLIISSN PIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPW+CAC IH
Subjt:  MRLLSQTFRCQKPPISNPEVSKPSSSSTKDPSPATLIVKSKPKPKQWCAYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWVCACTIH

Query:  GFKDQSEG
        GFK+QS+G
Subjt:  GFKDQSEG

A0A6J1J5C9 structure-specific endonuclease subunit slx1 isoform X14.0e-4181.31Show/hide
Query:  MRLLSQTFRCQKPPISNPEVSKPSSSSTKDPSPATLIVKSKPKPKQWCAYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWVCACTIH
        MRLLSQTFR QK PIS+PEVSK SSSSTK P   TL +KS+P+ K+WC YLIISSN PIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPW+CAC IH
Subjt:  MRLLSQTFRCQKPPISNPEVSKPSSSSTKDPSPATLIVKSKPKPKQWCAYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWVCACTIH

Query:  GFKDQSE
        GFK+QS+
Subjt:  GFKDQSE

SwissProt top hitse value%identityAlignment
A8PWH1 Structure-specific endonuclease subunit SLX18.7e-0936.11Show/hide
Query:  PKQWCAYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWVCACTIHGFKDQSEGMHLKYNF
        P+ +  Y + S + P +TY+G T D  RRL+QHNG +K GA  TR  RPW     ++GF  +   +  ++++
Subjt:  PKQWCAYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWVCACTIHGFKDQSEGMHLKYNF

B6JY16 Structure-specific endonuclease subunit slx16.4e-1244.12Show/hide
Query:  WCAYLIISSNSPIKT-YVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWVCACTIHGFKDQSEGMHLKY
        +C YL++S  +  ++ Y+G T D  RRL+QHNGEIKGGA  T+  RPW  AC +HGF  +   +  ++
Subjt:  WCAYLIISSNSPIKT-YVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWVCACTIHGFKDQSEGMHLKY

B6QFH5 Structure-specific endonuclease subunit slx12.3e-0940.26Show/hide
Query:  KPKPKQWCAYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAG--RPWVCACTIHGFKDQSEGMHLKYNF
        KP P  +C YL+ S   P   Y+G T D  RRL+QHNG  KGGAK T     RPW     I GF  ++  +  ++++
Subjt:  KPKPKQWCAYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAG--RPWVCACTIHGFKDQSEGMHLKYNF

B8MDD1 Structure-specific endonuclease subunit slx16.0e-1038.75Show/hide
Query:  VKSKPKPKQWCAYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAG--RPWVCACTIHGFKDQSEGMHLKYNF
        V +KP P  +C YL+ S+  P   Y+G T D  RRL+QHNG  KGGAK T     RPW     + GF  ++  +  ++++
Subjt:  VKSKPKPKQWCAYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAG--RPWVCACTIHGFKDQSEGMHLKYNF

Q9P7M3 Structure-specific endonuclease subunit slx14.1e-1142.25Show/hide
Query:  WCAYLIIS--SNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWVCACTIHGFKDQSEGMHLKYNF
        +C YL+ S  + S    Y+G T D  RRL+QHNGEI GGA  T+ GRPW  +C ++GF ++   +  ++N+
Subjt:  WCAYLIIS--SNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWVCACTIHGFKDQSEGMHLKYNF

Arabidopsis top hitse value%identityAlignment
AT2G30350.2 Excinuclease ABC, C subunit, N-terminal9.8e-0836.11Show/hide
Query:  KQWCAYLIISSNSPI---KTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWVCACTIHGFKDQSEGMHLKY
        K + A  +++S SP    +TY+G T++  RR++QHNGEI  GA  T+  RPW     I+GF      +  ++
Subjt:  KQWCAYLIISSNSPI---KTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWVCACTIHGFKDQSEGMHLKY

AT5G43210.1 Excinuclease ABC, C subunit, N-terminal8.8e-2555.14Show/hide
Query:  RLLSQTFRCQKPPISN---PEVSKPSSSSTKDPSPATLIVKSK---PKPKQWCAYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWVC
        RLLS+TF   K   SN   PE     +S T+ P P++   +     PK K W  YLI+S+  PIKTYVG+T DF RRLKQHNGEI+GGAKA+ AGRPW+C
Subjt:  RLLSQTFRCQKPPISN---PEVSKPSSSSTKDPSPATLIVKSK---PKPKQWCAYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWVC

Query:  ACTIHGF
        AC I GF
Subjt:  ACTIHGF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGACTGCTCTCTCAGACATTTCGTTGCCAAAAACCCCCAATTTCAAATCCAGAAGTTTCGAAACCTTCTTCTTCGTCGACCAAGGATCCATCGCCTGCGACATTGAT
CGTCAAATCAAAGCCGAAGCCGAAGCAATGGTGTGCATATCTCATCATCTCCTCCAATTCCCCCATCAAAACCTATGTTGGGGTCACCCTCGACTTTGATCGACGTTTGA
AACAACACAATGGTGAAATAAAAGGTGGTGCGAAAGCAACTCGAGCGGGACGACCCTGGGTCTGTGCATGCACAATTCATGGCTTTAAAGACCAAAGTGAAGGTATGCAT
TTGAAATATAATTTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGACTGCTCTCTCAGACATTTCGTTGCCAAAAACCCCCAATTTCAAATCCAGAAGTTTCGAAACCTTCTTCTTCGTCGACCAAGGATCCATCGCCTGCGACATTGAT
CGTCAAATCAAAGCCGAAGCCGAAGCAATGGTGTGCATATCTCATCATCTCCTCCAATTCCCCCATCAAAACCTATGTTGGGGTCACCCTCGACTTTGATCGACGTTTGA
AACAACACAATGGTGAAATAAAAGGTGGTGCGAAAGCAACTCGAGCGGGACGACCCTGGGTCTGTGCATGCACAATTCATGGCTTTAAAGACCAAAGTGAAGGTATGCAT
TTGAAATATAATTTCTAG
Protein sequenceShow/hide protein sequence
MRLLSQTFRCQKPPISNPEVSKPSSSSTKDPSPATLIVKSKPKPKQWCAYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWVCACTIHGFKDQSEGMH
LKYNF