CuGenDBv2

Gene ID	Spg038909
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	protein LOW PSII ACCUMULATION 1, chloroplastic
Genome location	scaffold12:3747840..3752571
RNA-Seq Expression	Spg038909
Synteny	Spg038909
Gene Ontology terms	GO:0010270 - photosystem II oxygen evolving complex assembly (biological process) GO:0016021 - integral component of membrane (cellular component) GO:0005515 - protein binding (molecular function)
InterPro domains	IPR011990 - Tetratricopeptide-like helical domain superfamily IPR019734 - Tetratricopeptide repeat IPR021883 - Protein LOW PSII ACCUMULATION 1-like

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004152258.2 protein LOW PSII ACCUMULATION 1, chloroplastic [Cucumis sativus]

2.3e-224

92.08

Show/hide

Query:  MAMASLPLYHQLLSLSNPKSKTILRPRLPSSTSTLFNSQRNFHLSIVYCSSTSQSPEANVGSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQ
        MAMA+LPL+H L +LSNPKS TILRPRLP+       SQR F LSI+ CSSTSQSPEAN+ SAESCVN GLQLFSKGRVKEALVQFEAALNMDPNPMEAQ
Subjt:  MAMASLPLYHQLLSLSNPKSKTILRPRLPSSTSTLFNSQRNFHLSIVYCSSTSQSPEANVGSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQ

Query:  AALYNKACCHAYRGEGKKASDCLRLALREYNLKFGTILNDPDLASFRALPEFKELQEEARIGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYVALSAAAG
        AALYNKACCHAYRGEGKKA+DCLR+ALREYNLKFGTILNDPDLASFRALPEFKELQEEAR+GGEDIGYGFRRDLKLISEVQAPFRGVRKFFYVALSAAAG
Subjt:  AALYNKACCHAYRGEGKKASDCLRLALREYNLKFGTILNDPDLASFRALPEFKELQEEARIGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYVALSAAAG

Query:  ISLLFTLPRLFRAIQGGDQAPDVWETAGNLAVNVGGIVVLVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSS
        ISLLF +PRLFRAIQGGD APDVWETAGNLAVNVGGI+V VALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSS
Subjt:  ISLLFTLPRLFRAIQGGDQAPDVWETAGNLAVNVGGIVVLVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSS

Query:  AIQKAERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPAT-AAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPG
        AIQKAERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAP T AAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIR+QQ+SEGVTPG
Subjt:  AIQKAERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPAT-AAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPG

Query:  EDVYIILRLDGRVRRSGRGMPDWPKIIEELPPMEALLSKLER
        EDVYIILRLDGRVRRSGRGMPDW KIIEELPPMEALLSKLE+
Subjt:  EDVYIILRLDGRVRRSGRGMPDWPKIIEELPPMEALLSKLER

XP_008454363.1 PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic isoform X1 [Cucumis melo]

8.4e-227

92.29

Show/hide

Query:  MAMASLPLYHQLLSLSNPKSKTILRPRLPSSTSTLFNSQRNFHLSIVYCSSTSQSPEANVGSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQ
        MAMA+LPL+H L +LSNPKS TILRPRLP+       SQR FHLSI+ CSSTSQSPEAN+ SAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQ
Subjt:  MAMASLPLYHQLLSLSNPKSKTILRPRLPSSTSTLFNSQRNFHLSIVYCSSTSQSPEANVGSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQ

Query:  AALYNKACCHAYRGEGKKASDCLRLALREYNLKFGTILNDPDLASFRALPEFKELQEEARIGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYVALSAAAG
        AA YNKACCHAYRGEGKKA+DCLR+ALREYNLKFGTILNDPDLASFRALPEFKELQEEAR+GGEDIGYGFRRDLKLISEVQAPFRGVR+FFYVALSAAAG
Subjt:  AALYNKACCHAYRGEGKKASDCLRLALREYNLKFGTILNDPDLASFRALPEFKELQEEARIGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYVALSAAAG

Query:  ISLLFTLPRLFRAIQGGDQAPDVWETAGNLAVNVGGIVVLVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSS
        ISLLF +PRLFRAIQGGD APDVWETAGNLAVNVGGI+V VALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSS
Subjt:  ISLLFTLPRLFRAIQGGDQAPDVWETAGNLAVNVGGIVVLVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSS

Query:  AIQKAERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPATAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGE
        AIQKAERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPA AA ALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGE
Subjt:  AIQKAERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPATAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGE

Query:  DVYIILRLDGRVRRSGRGMPDWPKIIEELPPMEALLSKLER
        DVYIILRLDGR+RRSGRGMPDW KIIEELPPMEALLSKLE+
Subjt:  DVYIILRLDGRVRRSGRGMPDWPKIIEELPPMEALLSKLER

XP_022143429.1 protein LOW PSII ACCUMULATION 1, chloroplastic isoform X1 [Momordica charantia]

2.4e-229

91.84

Show/hide

Query:  MAMASLPLYHQLLSLSNPKSKTILRPRLPSSTSTLFNSQRNFHLSIVYCSSTSQSPEANVGSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQ
        MA+A+LPLYH LL  SNPKS+T LRPRLP+ST   FN  +NFHLSI +CSSTSQSPEANV +AESCVNLGLQLFSKGRVKEALVQF+AALN+DPNP+EAQ
Subjt:  MAMASLPLYHQLLSLSNPKSKTILRPRLPSSTSTLFNSQRNFHLSIVYCSSTSQSPEANVGSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQ

Query:  AALYNKACCHAYRGEGKKASDCLRLALREYNLKFGTILNDPDLASFRALPEFKELQEEARIGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYVALSAAAG
        AA YNKACCHAYRGEGKKA+DCLR+ALREYNLKFGTILNDPDLASFRALPEFKELQEEAR+GGEDIGYGFRRDLKLISEVQAPFRGVRKFFYVALSAAAG
Subjt:  AALYNKACCHAYRGEGKKASDCLRLALREYNLKFGTILNDPDLASFRALPEFKELQEEARIGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYVALSAAAG

Query:  ISLLFTLPRLFRAIQGGDQAPDVWETAGNLAVNVGGIVVLVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSS
        ISLLFT+PRLFRAIQGGD+APDVWETAGNLAVN+GGI+VLVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSS
Subjt:  ISLLFTLPRLFRAIQGGDQAPDVWETAGNLAVNVGGIVVLVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSS

Query:  AIQKAERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPATAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGE
        AIQKAERFRTELLRRGVLLVPV+WGEGREPQIEK+GFGAP  A A LPSIGEDFEKRAQSITAKSKLKAEIRFRAEV+SPAEWESWIRDQQKSEGVTPGE
Subjt:  AIQKAERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPATAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGE

Query:  DVYIILRLDGRVRRSGRGMPDWPKIIEELPPMEALLSKLER
        DVYIILRLDGRVRRSGRGMPDWPKIIEELPPMEALLSKLER
Subjt:  DVYIILRLDGRVRRSGRGMPDWPKIIEELPPMEALLSKLER

XP_022983449.1 protein LOW PSII ACCUMULATION 1, chloroplastic [Cucurbita maxima]

4.1e-221

90.5

Show/hide

Query:  MAMASLPLYHQLLSLSNPKSKTILRPRLPSSTSTLFNSQRNFHLSIVYCSSTSQSPEANVGSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQ
        + MA+LP++HQLL+LSNPKS TILR RLP+S     NSQR FH+SI+ CSSTSQSPE NV SAES VNLGLQLFSKGRVKEALVQFEAAL+M+PNPMEAQ
Subjt:  MAMASLPLYHQLLSLSNPKSKTILRPRLPSSTSTLFNSQRNFHLSIVYCSSTSQSPEANVGSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQ

Query:  AALYNKACCHAYRGEGKKASDCLRLALREYNLKFGTILNDPDLASFRALPEFKELQEEARIGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYVALSAAAG
        AALYNKACCHAYRGEGKKA+DCLR+ALREYNLKFGTILNDPDLASFRALPEFKELQEEAR+GGEDIGYGFRRDLKLISEVQAPFRGVR+FFYVALSAAAG
Subjt:  AALYNKACCHAYRGEGKKASDCLRLALREYNLKFGTILNDPDLASFRALPEFKELQEEARIGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYVALSAAAG

Query:  ISLLFTLPRLFRAIQGGDQAPDVWETAGNLAVNVGGIVVLVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSS
        ISLLF LPRLFRAIQGG++APDVWET GNLAVNVGGIVV VALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNR+VELVQLRDTVRPVILAGKKETVSS
Subjt:  ISLLFTLPRLFRAIQGGDQAPDVWETAGNLAVNVGGIVVLVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSS

Query:  AIQKAERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPATA-AAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPG
        AIQKAERFRTELLRRGVLLVPVIW EGREP++EKKGFGAPA A +AALPSIGEDFEKRAQSITAKSKLKAEIRFRA+VISPAEWESWIRDQQKSEGVTPG
Subjt:  AIQKAERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPATA-AAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPG

Query:  EDVYIILRLDGRVRRSGRGMPDWPKIIEELPPMEALLSKLER
        EDVYIILRLDGRVRRSGRGMPDW KIIEELPPM+ALLSKLER
Subjt:  EDVYIILRLDGRVRRSGRGMPDWPKIIEELPPMEALLSKLER

XP_038905239.1 protein LOW PSII ACCUMULATION 1, chloroplastic [Benincasa hispida]

7.4e-223

91.61

Show/hide

Query:  MAMASLPLYHQLLSLSNPKSKTILRPRLPSSTSTLFNSQRNFHLSIVYCSSTSQSPEANVGSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQ
        MAMA+LPL+H LL+ S+PKS TILRPR       L  SQR FH+SI+  SSTSQSPEAN+ SAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQ
Subjt:  MAMASLPLYHQLLSLSNPKSKTILRPRLPSSTSTLFNSQRNFHLSIVYCSSTSQSPEANVGSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQ

Query:  AALYNKACCHAYRGEGKKASDCLRLALREYNLKFGTILNDPDLASFRALPEFKELQEEARIGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYVALSAAAG
        AALYNKACCHAYRGEGKKA+DCLR+ALREYNLKFGTILNDPDLASFRALPEFKELQEEAR+GGEDIGYGFRRDLKLISEVQAPFRGVR+FF VALSAAAG
Subjt:  AALYNKACCHAYRGEGKKASDCLRLALREYNLKFGTILNDPDLASFRALPEFKELQEEARIGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYVALSAAAG

Query:  ISLLFTLPRLFRAIQGGDQAPDVWETAGNLAVNVGGIVVLVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSS
        ISLLF +PRLFRAIQGGD APDVWETAGNLAVNVGGIVV VALFLWDNKKEEEQL+QISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSS
Subjt:  ISLLFTLPRLFRAIQGGDQAPDVWETAGNLAVNVGGIVVLVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSS

Query:  AIQKAERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPATAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGE
        AIQKAERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPAT AAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEV+SPAEWESWIRDQQKSE VTPGE
Subjt:  AIQKAERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPATAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGE

Query:  DVYIILRLDGRVRRSGRGMPDWPKIIEELPPMEALLSKLER
        DVYIILRLDGRVRRSGRGMPDW KIIEELPPMEALLSKLER
Subjt:  DVYIILRLDGRVRRSGRGMPDWPKIIEELPPMEALLSKLER

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KT96 TPR_REGION domain-containing protein

1.1e-224

92.08

Show/hide

Query:  MAMASLPLYHQLLSLSNPKSKTILRPRLPSSTSTLFNSQRNFHLSIVYCSSTSQSPEANVGSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQ
        MAMA+LPL+H L +LSNPKS TILRPRLP+       SQR F LSI+ CSSTSQSPEAN+ SAESCVN GLQLFSKGRVKEALVQFEAALNMDPNPMEAQ
Subjt:  MAMASLPLYHQLLSLSNPKSKTILRPRLPSSTSTLFNSQRNFHLSIVYCSSTSQSPEANVGSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQ

Query:  AALYNKACCHAYRGEGKKASDCLRLALREYNLKFGTILNDPDLASFRALPEFKELQEEARIGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYVALSAAAG
        AALYNKACCHAYRGEGKKA+DCLR+ALREYNLKFGTILNDPDLASFRALPEFKELQEEAR+GGEDIGYGFRRDLKLISEVQAPFRGVRKFFYVALSAAAG
Subjt:  AALYNKACCHAYRGEGKKASDCLRLALREYNLKFGTILNDPDLASFRALPEFKELQEEARIGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYVALSAAAG

Query:  ISLLFTLPRLFRAIQGGDQAPDVWETAGNLAVNVGGIVVLVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSS
        ISLLF +PRLFRAIQGGD APDVWETAGNLAVNVGGI+V VALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSS
Subjt:  ISLLFTLPRLFRAIQGGDQAPDVWETAGNLAVNVGGIVVLVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSS

Query:  AIQKAERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPAT-AAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPG
        AIQKAERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAP T AAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIR+QQ+SEGVTPG
Subjt:  AIQKAERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPAT-AAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPG

Query:  EDVYIILRLDGRVRRSGRGMPDWPKIIEELPPMEALLSKLER
        EDVYIILRLDGRVRRSGRGMPDW KIIEELPPMEALLSKLE+
Subjt:  EDVYIILRLDGRVRRSGRGMPDWPKIIEELPPMEALLSKLER

A0A1S3BYE8 protein LOW PSII ACCUMULATION 1, chloroplastic isoform X1

4.1e-227

92.29

Show/hide

Query:  MAMASLPLYHQLLSLSNPKSKTILRPRLPSSTSTLFNSQRNFHLSIVYCSSTSQSPEANVGSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQ
        MAMA+LPL+H L +LSNPKS TILRPRLP+       SQR FHLSI+ CSSTSQSPEAN+ SAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQ
Subjt:  MAMASLPLYHQLLSLSNPKSKTILRPRLPSSTSTLFNSQRNFHLSIVYCSSTSQSPEANVGSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQ

Query:  AALYNKACCHAYRGEGKKASDCLRLALREYNLKFGTILNDPDLASFRALPEFKELQEEARIGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYVALSAAAG
        AA YNKACCHAYRGEGKKA+DCLR+ALREYNLKFGTILNDPDLASFRALPEFKELQEEAR+GGEDIGYGFRRDLKLISEVQAPFRGVR+FFYVALSAAAG
Subjt:  AALYNKACCHAYRGEGKKASDCLRLALREYNLKFGTILNDPDLASFRALPEFKELQEEARIGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYVALSAAAG

Query:  ISLLFTLPRLFRAIQGGDQAPDVWETAGNLAVNVGGIVVLVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSS
        ISLLF +PRLFRAIQGGD APDVWETAGNLAVNVGGI+V VALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSS
Subjt:  ISLLFTLPRLFRAIQGGDQAPDVWETAGNLAVNVGGIVVLVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSS

Query:  AIQKAERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPATAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGE
        AIQKAERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPA AA ALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGE
Subjt:  AIQKAERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPATAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGE

Query:  DVYIILRLDGRVRRSGRGMPDWPKIIEELPPMEALLSKLER
        DVYIILRLDGR+RRSGRGMPDW KIIEELPPMEALLSKLE+
Subjt:  DVYIILRLDGRVRRSGRGMPDWPKIIEELPPMEALLSKLER

A0A5A7TR76 Protein LOW PSII ACCUMULATION 1

4.1e-227

92.29

Show/hide

Query:  MAMASLPLYHQLLSLSNPKSKTILRPRLPSSTSTLFNSQRNFHLSIVYCSSTSQSPEANVGSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQ
        MAMA+LPL+H L +LSNPKS TILRPRLP+       SQR FHLSI+ CSSTSQSPEAN+ SAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQ
Subjt:  MAMASLPLYHQLLSLSNPKSKTILRPRLPSSTSTLFNSQRNFHLSIVYCSSTSQSPEANVGSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQ

Query:  AALYNKACCHAYRGEGKKASDCLRLALREYNLKFGTILNDPDLASFRALPEFKELQEEARIGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYVALSAAAG
        AA YNKACCHAYRGEGKKA+DCLR+ALREYNLKFGTILNDPDLASFRALPEFKELQEEAR+GGEDIGYGFRRDLKLISEVQAPFRGVR+FFYVALSAAAG
Subjt:  AALYNKACCHAYRGEGKKASDCLRLALREYNLKFGTILNDPDLASFRALPEFKELQEEARIGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYVALSAAAG

Query:  ISLLFTLPRLFRAIQGGDQAPDVWETAGNLAVNVGGIVVLVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSS
        ISLLF +PRLFRAIQGGD APDVWETAGNLAVNVGGI+V VALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSS
Subjt:  ISLLFTLPRLFRAIQGGDQAPDVWETAGNLAVNVGGIVVLVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSS

Query:  AIQKAERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPATAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGE
        AIQKAERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPA AA ALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGE
Subjt:  AIQKAERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPATAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGE

Query:  DVYIILRLDGRVRRSGRGMPDWPKIIEELPPMEALLSKLER
        DVYIILRLDGR+RRSGRGMPDW KIIEELPPMEALLSKLE+
Subjt:  DVYIILRLDGRVRRSGRGMPDWPKIIEELPPMEALLSKLER

A0A6J1CPA1 protein LOW PSII ACCUMULATION 1, chloroplastic isoform X1

1.1e-229

91.84

Show/hide

Query:  MAMASLPLYHQLLSLSNPKSKTILRPRLPSSTSTLFNSQRNFHLSIVYCSSTSQSPEANVGSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQ
        MA+A+LPLYH LL  SNPKS+T LRPRLP+ST   FN  +NFHLSI +CSSTSQSPEANV +AESCVNLGLQLFSKGRVKEALVQF+AALN+DPNP+EAQ
Subjt:  MAMASLPLYHQLLSLSNPKSKTILRPRLPSSTSTLFNSQRNFHLSIVYCSSTSQSPEANVGSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQ

Query:  AALYNKACCHAYRGEGKKASDCLRLALREYNLKFGTILNDPDLASFRALPEFKELQEEARIGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYVALSAAAG
        AA YNKACCHAYRGEGKKA+DCLR+ALREYNLKFGTILNDPDLASFRALPEFKELQEEAR+GGEDIGYGFRRDLKLISEVQAPFRGVRKFFYVALSAAAG
Subjt:  AALYNKACCHAYRGEGKKASDCLRLALREYNLKFGTILNDPDLASFRALPEFKELQEEARIGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYVALSAAAG

Query:  ISLLFTLPRLFRAIQGGDQAPDVWETAGNLAVNVGGIVVLVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSS
        ISLLFT+PRLFRAIQGGD+APDVWETAGNLAVN+GGI+VLVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSS
Subjt:  ISLLFTLPRLFRAIQGGDQAPDVWETAGNLAVNVGGIVVLVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSS

Query:  AIQKAERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPATAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGE
        AIQKAERFRTELLRRGVLLVPV+WGEGREPQIEK+GFGAP  A A LPSIGEDFEKRAQSITAKSKLKAEIRFRAEV+SPAEWESWIRDQQKSEGVTPGE
Subjt:  AIQKAERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPATAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGE

Query:  DVYIILRLDGRVRRSGRGMPDWPKIIEELPPMEALLSKLER
        DVYIILRLDGRVRRSGRGMPDWPKIIEELPPMEALLSKLER
Subjt:  DVYIILRLDGRVRRSGRGMPDWPKIIEELPPMEALLSKLER

A0A6J1J7F4 protein LOW PSII ACCUMULATION 1, chloroplastic

2.0e-221

90.5

Show/hide

Query:  MAMASLPLYHQLLSLSNPKSKTILRPRLPSSTSTLFNSQRNFHLSIVYCSSTSQSPEANVGSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQ
        + MA+LP++HQLL+LSNPKS TILR RLP+S     NSQR FH+SI+ CSSTSQSPE NV SAES VNLGLQLFSKGRVKEALVQFEAAL+M+PNPMEAQ
Subjt:  MAMASLPLYHQLLSLSNPKSKTILRPRLPSSTSTLFNSQRNFHLSIVYCSSTSQSPEANVGSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQ

Query:  AALYNKACCHAYRGEGKKASDCLRLALREYNLKFGTILNDPDLASFRALPEFKELQEEARIGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYVALSAAAG
        AALYNKACCHAYRGEGKKA+DCLR+ALREYNLKFGTILNDPDLASFRALPEFKELQEEAR+GGEDIGYGFRRDLKLISEVQAPFRGVR+FFYVALSAAAG
Subjt:  AALYNKACCHAYRGEGKKASDCLRLALREYNLKFGTILNDPDLASFRALPEFKELQEEARIGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYVALSAAAG

Query:  ISLLFTLPRLFRAIQGGDQAPDVWETAGNLAVNVGGIVVLVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSS
        ISLLF LPRLFRAIQGG++APDVWET GNLAVNVGGIVV VALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNR+VELVQLRDTVRPVILAGKKETVSS
Subjt:  ISLLFTLPRLFRAIQGGDQAPDVWETAGNLAVNVGGIVVLVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSS

Query:  AIQKAERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPATA-AAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPG
        AIQKAERFRTELLRRGVLLVPVIW EGREP++EKKGFGAPA A +AALPSIGEDFEKRAQSITAKSKLKAEIRFRA+VISPAEWESWIRDQQKSEGVTPG
Subjt:  AIQKAERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPATA-AAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPG

Query:  EDVYIILRLDGRVRRSGRGMPDWPKIIEELPPMEALLSKLER
        EDVYIILRLDGRVRRSGRGMPDW KIIEELPPM+ALLSKLER
Subjt:  EDVYIILRLDGRVRRSGRGMPDWPKIIEELPPMEALLSKLER

SwissProt top hits

e value

%identity

Alignment

Q9SRY4 Protein LOW PSII ACCUMULATION 1, chloroplastic

1.4e-179

73.71

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Query:  RPRLPSSTSTLFNSQRNFHLSIVYCSSTSQSPEANVGS---------AESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKACCHAYRGE
        RP LP   +TLFNS+RN+   +   +S+S SP ++  S         AE CVN GL LF +GRVK+ALVQFE AL++ PNP+E+QAA YNKACCHAYRGE
Subjt:  RPRLPSSTSTLFNSQRNFHLSIVYCSSTSQSPEANVGS---------AESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKACCHAYRGE

Query:  GKKASDCLRLALREYNLKFGTILNDPDLASFRALPEFKELQEEARIGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYVALSAAAGISLLFTLPRLFRAIQ
        GKKA DCLR+ALR+YNLKF TILNDPDLASFRALPEFKELQEEAR+GGEDIG  FRRDLKLISEV+APFRGVRKFFY A +AAAGIS+ FT+PRL +AI+
Subjt:  GKKASDCLRLALREYNLKFGTILNDPDLASFRALPEFKELQEEARIGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYVALSAAAGISLLFTLPRLFRAIQ

Query:  GGDQAPDVWETAGNLAVNVGGIVVLVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAERFRTELLRR
        GGD AP++ ET GN A+N+GGIVV+V+LFLW+NKKEEEQ+ QI+R+ETLSRLPLRLSTNR+VELVQLRDTVRPVILAGKKETV+ A+QKA+RFRTELLRR
Subjt:  GGDQAPDVWETAGNLAVNVGGIVVLVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAERFRTELLRR

Query:  GVLLVPVIWGEGREPQIEKKGFGAPATAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYIILRLDGRVRRS
        GVLLVPV+WGE + P+IEKKGFGA + AA +LPSIGEDF+ RAQS+ A+SKLK EIRF+AE +SP EWE WIRDQQ SEGV PG+DVYIILRLDGRVRRS
Subjt:  GVLLVPVIWGEGREPQIEKKGFGAPATAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYIILRLDGRVRRS

Query:  GRGMPDWPKIIEELPPMEALLSKLER
        GRGMPDW +I +ELPPM+ +LSKLER
Subjt:  GRGMPDWPKIIEELPPMEALLSKLER

Arabidopsis top hits

e value

%identity

Alignment

AT1G02910.1 tetratricopeptide repeat (TPR)-containing protein

9.7e-181

73.71

Show/hide

Query:  RPRLPSSTSTLFNSQRNFHLSIVYCSSTSQSPEANVGS---------AESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKACCHAYRGE
        RP LP   +TLFNS+RN+   +   +S+S SP ++  S         AE CVN GL LF +GRVK+ALVQFE AL++ PNP+E+QAA YNKACCHAYRGE
Subjt:  RPRLPSSTSTLFNSQRNFHLSIVYCSSTSQSPEANVGS---------AESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKACCHAYRGE

Query:  GKKASDCLRLALREYNLKFGTILNDPDLASFRALPEFKELQEEARIGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYVALSAAAGISLLFTLPRLFRAIQ
        GKKA DCLR+ALR+YNLKF TILNDPDLASFRALPEFKELQEEAR+GGEDIG  FRRDLKLISEV+APFRGVRKFFY A +AAAGIS+ FT+PRL +AI+
Subjt:  GKKASDCLRLALREYNLKFGTILNDPDLASFRALPEFKELQEEARIGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYVALSAAAGISLLFTLPRLFRAIQ

Query:  GGDQAPDVWETAGNLAVNVGGIVVLVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAERFRTELLRR
        GGD AP++ ET GN A+N+GGIVV+V+LFLW+NKKEEEQ+ QI+R+ETLSRLPLRLSTNR+VELVQLRDTVRPVILAGKKETV+ A+QKA+RFRTELLRR
Subjt:  GGDQAPDVWETAGNLAVNVGGIVVLVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAERFRTELLRR

Query:  GVLLVPVIWGEGREPQIEKKGFGAPATAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYIILRLDGRVRRS
        GVLLVPV+WGE + P+IEKKGFGA + AA +LPSIGEDF+ RAQS+ A+SKLK EIRF+AE +SP EWE WIRDQQ SEGV PG+DVYIILRLDGRVRRS
Subjt:  GVLLVPVIWGEGREPQIEKKGFGAPATAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYIILRLDGRVRRS

Query:  GRGMPDWPKIIEELPPMEALLSKLER
        GRGMPDW +I +ELPPM+ +LSKLER
Subjt:  GRGMPDWPKIIEELPPMEALLSKLER

AT4G28740.1 FUNCTIONS IN: molecular_function unknown

4.4e-32

30.97

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Query:  DLKLISEVQAPFRGVRKFFYVALSAAAGISLLFTLPRLFRAIQGGDQAPDVWETAGNLAVNVGGIVVLVALFLWDNKKEEEQLAQISRNETLSRLPLRL-
        D ++ SEV +PFR VR FFY+A  A+  +  L    RL  A+    ++ +V E    L V++G   +   L+  +NK +  Q+A++SR E L +L +R+ 
Subjt:  DLKLISEVQAPFRGVRKFFYVALSAAAGISLLFTLPRLFRAIQGGDQAPDVWETAGNLAVNVGGIVVLVALFLWDNKKEEEQLAQISRNETLSRLPLRL-

Query:  STNRIVELVQLRDTVRPVILAGKKETVSSAIQKAERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPATAAAALPSIGEDFEKRAQSITAKSKLKAEI
          N+++ +  LR   R VI AG  E +  A ++++ +   L+ RGV++V     +G  P +E   F     A        E+  +R + +          
Subjt:  STNRIVELVQLRDTVRPVILAGKKETVSSAIQKAERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPATAAAALPSIGEDFEKRAQSITAKSKLKAEI

Query:  RFRAEVISPAEWESWIRDQQKSEGVTPGEDVYIILRLDGRVRRSGRGMPDWPKIIEELPPMEALLSKL
         +R   +   EWE W+ +Q+K   V+    VY+ LRLDGRVR SG G P W   + +LPP++ + + L
Subjt:  RFRAEVISPAEWESWIRDQQKSEGVTPGEDVYIILRLDGRVRRSGRGMPDWPKIIEELPPMEALLSKL

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCTATGGCTTCTCTTCCTCTGTACCACCAGCTGCTCAGCCTCTCAAACCCCAAATCAAAAACCATTCTCAGGCCGCGGCTACCGAGCTCCACATCCACCCTCTTCAA
TTCCCAAAGGAATTTCCATCTCTCTATTGTGTATTGCTCTTCCACTTCTCAGTCCCCTGAAGCTAATGTCGGATCTGCAGAGTCCTGCGTCAATCTCGGCCTCCAGCTCT
TTTCTAAAGGACGGGTCAAAGAAGCTTTAGTCCAGTTTGAAGCAGCACTGAATATGGATCCCAACCCAATGGAGGCCCAAGCTGCTTTGTACAATAAAGCATGTTGTCAT
GCCTATCGTGGGGAAGGGAAGAAAGCTTCTGACTGTCTGCGTCTTGCATTAAGAGAATATAACCTGAAGTTTGGCACCATTCTGAATGATCCTGACTTGGCCTCATTCAG
AGCTCTTCCTGAATTCAAGGAATTGCAAGAAGAGGCTAGGATAGGCGGAGAGGATATAGGATATGGTTTTCGAAGAGATCTTAAACTCATTAGTGAAGTGCAAGCACCTT
TTCGTGGAGTACGGAAGTTCTTTTATGTGGCACTATCTGCAGCAGCTGGAATATCATTGTTGTTTACTCTACCTAGGTTATTTCGTGCTATTCAAGGTGGTGATCAAGCT
CCTGATGTTTGGGAAACTGCTGGAAATTTAGCTGTTAATGTTGGAGGTATTGTTGTTCTTGTGGCATTATTCTTATGGGACAACAAGAAAGAAGAGGAACAGCTTGCACA
AATATCAAGAAATGAAACATTATCGAGGTTGCCTCTTCGTCTTTCCACCAATCGGATTGTTGAACTTGTACAGCTTCGAGATACTGTAAGACCGGTCATTTTAGCTGGGA
AAAAGGAGACAGTTTCTTCAGCCATCCAAAAAGCAGAAAGGTTCAGAACTGAGCTCCTTAGACGAGGCGTTCTCTTAGTTCCTGTCATATGGGGCGAAGGGAGGGAACCC
CAAATAGAAAAGAAAGGGTTTGGTGCTCCAGCCACTGCAGCTGCTGCTCTGCCATCTATTGGGGAAGATTTTGAGAAACGAGCTCAGTCTATAACTGCAAAATCGAAGTT
GAAAGCCGAAATTCGATTCAGGGCTGAGGTTATATCTCCAGCAGAATGGGAAAGTTGGATAAGGGACCAGCAGAAGTCTGAAGGGGTTACTCCTGGGGAGGATGTCTACA
TCATATTGCGATTGGACGGTCGAGTTCGAAGATCAGGGAGAGGGATGCCTGACTGGCCAAAAATTATTGAAGAGCTACCACCAATGGAAGCTCTTCTAAGCAAGCTAGAA
AGATGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MAMASLPLYHQLLSLSNPKSKTILRPRLPSSTSTLFNSQRNFHLSIVYCSSTSQSPEANVGSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKACCH
AYRGEGKKASDCLRLALREYNLKFGTILNDPDLASFRALPEFKELQEEARIGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYVALSAAAGISLLFTLPRLFRAIQGGDQA
PDVWETAGNLAVNVGGIVVLVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAERFRTELLRRGVLLVPVIWGEGREP
QIEKKGFGAPATAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYIILRLDGRVRRSGRGMPDWPKIIEELPPMEALLSKLE
R

Spg038909 (gene) of Sponge gourd (cylindrica) v1 genome