; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg038932 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg038932
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold12:4261578..4264537
RNA-Seq ExpressionSpg038932
SyntenySpg038932
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAB4279811.1 unnamed protein product [Prunus armeniaca]8.8e-0938.85Show/hide
Query:  EPFESWKLDPLSKNVLKMNSDASWNEDTATGGVGWIIRDSSRSLVDASCKQFNRKWSIKSLEALAIKEGLQEYSSGNRRRNAPLMVEVDDLGVIRMLNLE
        E   SW+   L   VLK+N DA+W   T  GGVGW++RDS   +V A CK   R  S  ++EA AI+E L         +   L VE D L +IRML  E
Subjt:  EPFESWKLDPLSKNVLKMNSDASWNEDTATGGVGWIIRDSSRSLVDASCKQFNRKWSIKSLEALAIKEGLQEYSSGNRRRNAPLMVEVDDLGVIRMLNLE

Query:  -EYDISDTRVVLNDISPLAAKAGVISFSKCPRAGNQIAH
           DI+   +V  DI  L  +     F   PR  N+ AH
Subjt:  -EYDISDTRVVLNDISPLAAKAGVISFSKCPRAGNQIAH

KAG6599977.1 hypothetical protein SDJN03_05210, partial [Cucurbita argyrosperma subsp. sororia]1.4e-0936.75Show/hide
Query:  KMNSDASWNEDTATGGVGWIIRDSSRSLVDASCKQFNRKWSIKSLEALAIKEGLQEY---SSGNRRRNAPLMVEVDDLGVIRMLNLEEYDISDTRVVLND
        K+NS ASW+E+   GGV W+I DS  S +   CK+  RKW +K LE  A+ EGL+ Y          + P++     L + R+LN    D+ +   V+++
Subjt:  KMNSDASWNEDTATGGVGWIIRDSSRSLVDASCKQFNRKWSIKSLEALAIKEGLQEY---SSGNRRRNAPLMVEVDDLGVIRMLNLEEYDISDTRVVLND

Query:  ISPLAAKAGVISFSKCP
        I  L   AG+ISF + P
Subjt:  ISPLAAKAGVISFSKCP

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]1.3e-1232.1Show/hide
Query:  RGGKKKKFLQLDKQQTGEPFESWKLDPLSKNVLKMNSDASWNEDTATGGVGWIIRDSSRSLVDASCKQFNRKWSIKSLEALAIKEGLQEYSSGNRRRNAP
        +G    K L L ++        WK  P + N  K+N++A+W  DT TGG+GWI+RD    ++ ASC+    + +I  LE +AI EGL+     + R   P
Subjt:  RGGKKKKFLQLDKQQTGEPFESWKLDPLSKNVLKMNSDASWNEDTATGGVGWIIRDSSRSLVDASCKQFNRKWSIKSLEALAIKEGLQEYSSGNRRRNAP

Query:  LMVEVDDLGVIRMLNLEEYDISDTRVVLNDISPLAAKAGVISFSKCPRAGNQIAHLLARAAI
        + +E D L  I +L+ +  D ++   +L +I  +     ++S     R  N++AH LAR A+
Subjt:  LMVEVDDLGVIRMLNLEEYDISDTRVVLNDISPLAAKAGVISFSKCPRAGNQIAHLLARAAI

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]2.1e-1034.78Show/hide
Query:  KLDPLSKNVLKMNSDASWNEDTATGGVGWIIRDSSRSLVDASCKQFNRKWSIKSLEALAIKEGLQEYSSGNRRRNAPLMVEVDDLGVIRMLNLEEYDISD
        K +P   ++  +N+DASW++ T  GG+GWIIR     +V A  +      ++K LEA AI EGL+  ++    R  PL +E D   V  +LN +  D++ 
Subjt:  KLDPLSKNVLKMNSDASWNEDTATGGVGWIIRDSSRSLVDASCKQFNRKWSIKSLEALAIKEGLQEYSSGNRRRNAPLMVEVDDLGVIRMLNLEEYDISD

Query:  TRVVLNDISPLAAKAGVISFSKCPRAGNQIAHLLARAA
        T  V+ +I  L     +++F+K  R  N  AH LA+ A
Subjt:  TRVVLNDISPLAAKAGVISFSKCPRAGNQIAHLLARAA

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]8.5e-1230.39Show/hide
Query:  DRGKTQTTSSEIAKRGGKKKKFLQLDKQQTGEPFESWKLDPLSKNVLKMNSDASWNEDTATGGVGWIIRDSSRSLVDASCKQFNRKWSIKSLEALAIKEG
        DR    +   +   +G    K L L ++        WK  P + N  K+N+DA+W  DT TGG+GWI+RD    ++ A C+    + +I  LE +AI EG
Subjt:  DRGKTQTTSSEIAKRGGKKKKFLQLDKQQTGEPFESWKLDPLSKNVLKMNSDASWNEDTATGGVGWIIRDSSRSLVDASCKQFNRKWSIKSLEALAIKEG

Query:  L----QEYSSGNRRRNA-PLMVEVDDLGVIRMLNLEEYDISDTRVVLNDISPLAAKAGVISFSKCPRAGNQIAHLLARAAI
        L    QE+    ++ +  P+ +E D L  I +L+ +  D ++   +L +I  +     ++S     R  N++AH LAR A+
Subjt:  L----QEYSSGNRRRNA-PLMVEVDDLGVIRMLNLEEYDISDTRVVLNDISPLAAKAGVISFSKCPRAGNQIAHLLARAAI

TrEMBL top hitse value%identityAlignment
A0A6J1CP26 uncharacterized protein LOC1110134126.4e-1332.1Show/hide
Query:  RGGKKKKFLQLDKQQTGEPFESWKLDPLSKNVLKMNSDASWNEDTATGGVGWIIRDSSRSLVDASCKQFNRKWSIKSLEALAIKEGLQEYSSGNRRRNAP
        +G    K L L ++        WK  P + N  K+N++A+W  DT TGG+GWI+RD    ++ ASC+    + +I  LE +AI EGL+     + R   P
Subjt:  RGGKKKKFLQLDKQQTGEPFESWKLDPLSKNVLKMNSDASWNEDTATGGVGWIIRDSSRSLVDASCKQFNRKWSIKSLEALAIKEGLQEYSSGNRRRNAP

Query:  LMVEVDDLGVIRMLNLEEYDISDTRVVLNDISPLAAKAGVISFSKCPRAGNQIAHLLARAAI
        + +E D L  I +L+ +  D ++   +L +I  +     ++S     R  N++AH LAR A+
Subjt:  LMVEVDDLGVIRMLNLEEYDISDTRVVLNDISPLAAKAGVISFSKCPRAGNQIAHLLARAAI

A0A6J1DNV9 uncharacterized protein LOC1110224031.0e-1034.78Show/hide
Query:  KLDPLSKNVLKMNSDASWNEDTATGGVGWIIRDSSRSLVDASCKQFNRKWSIKSLEALAIKEGLQEYSSGNRRRNAPLMVEVDDLGVIRMLNLEEYDISD
        K +P   ++  +N+DASW++ T  GG+GWIIR     +V A  +      ++K LEA AI EGL+  ++    R  PL +E D   V  +LN +  D++ 
Subjt:  KLDPLSKNVLKMNSDASWNEDTATGGVGWIIRDSSRSLVDASCKQFNRKWSIKSLEALAIKEGLQEYSSGNRRRNAPLMVEVDDLGVIRMLNLEEYDISD

Query:  TRVVLNDISPLAAKAGVISFSKCPRAGNQIAHLLARAA
        T  V+ +I  L     +++F+K  R  N  AH LA+ A
Subjt:  TRVVLNDISPLAAKAGVISFSKCPRAGNQIAHLLARAA

A0A6J1DSV1 uncharacterized protein LOC1110236084.1e-1230.39Show/hide
Query:  DRGKTQTTSSEIAKRGGKKKKFLQLDKQQTGEPFESWKLDPLSKNVLKMNSDASWNEDTATGGVGWIIRDSSRSLVDASCKQFNRKWSIKSLEALAIKEG
        DR    +   +   +G    K L L ++        WK  P + N  K+N+DA+W  DT TGG+GWI+RD    ++ A C+    + +I  LE +AI EG
Subjt:  DRGKTQTTSSEIAKRGGKKKKFLQLDKQQTGEPFESWKLDPLSKNVLKMNSDASWNEDTATGGVGWIIRDSSRSLVDASCKQFNRKWSIKSLEALAIKEG

Query:  L----QEYSSGNRRRNA-PLMVEVDDLGVIRMLNLEEYDISDTRVVLNDISPLAAKAGVISFSKCPRAGNQIAHLLARAAI
        L    QE+    ++ +  P+ +E D L  I +L+ +  D ++   +L +I  +     ++S     R  N++AH LAR A+
Subjt:  L----QEYSSGNRRRNA-PLMVEVDDLGVIRMLNLEEYDISDTRVVLNDISPLAAKAGVISFSKCPRAGNQIAHLLARAAI

A0A6J5UAY2 Reverse transcriptase domain-containing protein9.5e-0938.03Show/hide
Query:  EPFESWKLDPLSKNVLKMNSDASWNEDTATGGVGWIIRDSSRSLVDASCKQFNRKWSIKSLEALAIKEGLQEYSSGNRRRNAPLMVEVDDLGVIRMLNLE
        E   SW+  P    VLK+N DA+W   T  GGVGW++RDS   +V A  K   R  S  ++EA AI+E L         +   L VE D L VIRM+  E
Subjt:  EPFESWKLDPLSKNVLKMNSDASWNEDTATGGVGWIIRDSSRSLVDASCKQFNRKWSIKSLEALAIKEGLQEYSSGNRRRNAPLMVEVDDLGVIRMLNLE

Query:  -EYDISDTRVVLNDISPLAAKAGVISFSKCPRAGNQIAHLLA
           DI+   +V  DI  L  +     F   PR  N+ AH +A
Subjt:  -EYDISDTRVVLNDISPLAAKAGVISFSKCPRAGNQIAHLLA

A0A6J5UV01 Reverse transcriptase domain-containing protein4.3e-0938.85Show/hide
Query:  EPFESWKLDPLSKNVLKMNSDASWNEDTATGGVGWIIRDSSRSLVDASCKQFNRKWSIKSLEALAIKEGLQEYSSGNRRRNAPLMVEVDDLGVIRMLNLE
        E   SW+   L   VLK+N DA+W   T  GGVGW++RDS   +V A CK   R  S  ++EA AI+E L         +   L VE D L +IRML  E
Subjt:  EPFESWKLDPLSKNVLKMNSDASWNEDTATGGVGWIIRDSSRSLVDASCKQFNRKWSIKSLEALAIKEGLQEYSSGNRRRNAPLMVEVDDLGVIRMLNLE

Query:  -EYDISDTRVVLNDISPLAAKAGVISFSKCPRAGNQIAH
           DI+   +V  DI  L  +     F   PR  N+ AH
Subjt:  -EYDISDTRVVLNDISPLAAKAGVISFSKCPRAGNQIAH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein3.2e-0926.53Show/hide
Query:  WKLDPLSKNVLKMNSDASWNEDTATGGVGWIIRDSSRSLVDASCKQFNRKWSIKSLEALAIKEGLQEYSSGNRRRNAPLMVEVDDLGVIRMLNLEEYDIS
        WK  P     +K N+DA+W  +    G+GWI+R+ S  ++    +   R  ++   E  A++  +   S  N +R   ++ E D   ++ +LN +++   
Subjt:  WKLDPLSKNVLKMNSDASWNEDTATGGVGWIIRDSSRSLVDASCKQFNRKWSIKSLEALAIKEGLQEYSSGNRRRNAPLMVEVDDLGVIRMLNLEEYDIS

Query:  DTRVVLNDISPLAAKAGVISFSKCPRAGNQIAHLLARAAIGFLPVNP
          +  L DI  L      + F   PR GN++A  +AR +I F   +P
Subjt:  DTRVVLNDISPLAAKAGVISFSKCPRAGNQIAHLLARAAIGFLPVNP

AT4G29090.1 Ribonuclease H-like superfamily protein3.6e-0826.32Show/hide
Query:  LKMNSDASWNEDTATGGVGWIIRDSSRSLVDASCKQFNRKWSIKSLEALAIKEGLQEYSSGNRRRNAPLMVEVDDLGVIRMLNLEEYDISDTRVVLNDIS
        +K N+DA+WN D    G+GW++R+    +     +   +  S+   E  A++  +   S   R +   ++ E D   +I +LN +E   S  +  + D+ 
Subjt:  LKMNSDASWNEDTATGGVGWIIRDSSRSLVDASCKQFNRKWSIKSLEALAIKEGLQEYSSGNRRRNAPLMVEVDDLGVIRMLNLEEYDISDTRVVLNDIS

Query:  PLAAKAGVISFSKCPRAGNQIAHLLARAAIGFLPVNPLSIDAVISFTFSLMN
         L ++   + F   PR GN +A  +AR ++ FL  +P     V S+  S M+
Subjt:  PLAAKAGVISFSKCPRAGNQIAHLLARAAIGFLPVNPLSIDAVISFTFSLMN

AT5G65005.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein6.7e-0726.28Show/hide
Query:  QLDKQQTGEPFESWKLDPLSKNVLKMNSDASWNEDTATGGVGWIIRDSSRSLVDASCKQFNRKWSIKSLEALAIKEGLQ-EYSSGNRRRNAPLMVEVDDL
        Q +  +  +P  + K  P  ++ LK N DAS +E     G+GWI+R+S  ++++    +F  + + +  E   +   +Q  Y  G+++    ++ E D+ 
Subjt:  QLDKQQTGEPFESWKLDPLSKNVLKMNSDASWNEDTATGGVGWIIRDSSRSLVDASCKQFNRKWSIKSLEALAIKEGLQ-EYSSGNRRRNAPLMVEVDDL

Query:  GVIRMLNLEEYDISDTRV--VLNDISPLAAKAGVISFSKCPRAGNQIAHLLARAAI
         + RM+N +    S+ R+   L+ I         I FS   R  N  A  LA+ AI
Subjt:  GVIRMLNLEEYDISDTRV--VLNDISPLAAKAGVISFSKCPRAGNQIAHLLARAAI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAAATCGTGAAAATGATGTTTTCAAGAGATATGAGGAGGCCTCAGGACAAATGATAAACCTTAACAAGTCTGCGTTTATGGTGAGCAGGAATGTGAGCAATGGAGA
CTCGAGGATGATTGATGAGATCCTCATCATAAAGAAAACAAACTCACTTGGCACATACCTGGGAATGGCATCACAAAGCGATCGAGGGAAGACACAAACCACATCATCTG
AAATTGCAAAAAGAGGAGGAAAAAAGAAGAAATTCTTACAACTTGACAAACAACAGACTGGAGAACCTTTTGAATCATGGAAGTTGGACCCCCTCTCGAAAAATGTCCTG
AAAATGAACTCCGACGCCTCGTGGAATGAAGACACAGCGACTGGTGGAGTGGGCTGGATAATTCGTGATTCATCAAGGTCTCTTGTCGATGCGAGCTGCAAGCAATTCAA
CCGGAAATGGTCAATCAAATCCTTGGAAGCGCTAGCAATCAAGGAAGGTTTACAGGAATACTCATCTGGCAATCGAAGAAGAAATGCTCCTCTGATGGTGGAGGTCGATG
ATCTGGGCGTTATCAGAATGCTGAATTTGGAAGAATATGACATCTCTGACACAAGAGTAGTGCTGAACGATATCTCTCCTTTGGCAGCAAAAGCAGGAGTGATTTCTTTC
TCTAAATGCCCTAGGGCGGGCAATCAGATCGCGCACCTTCTAGCGCGTGCAGCGATCGGATTCTTACCGGTGAACCCTCTATCGATTGACGCCGTCATCAGCTTTACTTT
CTCTCTTATGAATATGTCATTTGGTGGTTCCATATGGCTATGCTAG
mRNA sequenceShow/hide mRNA sequence
ATGCAAAATCGTGAAAATGATGTTTTCAAGAGATATGAGGAGGCCTCAGGACAAATGATAAACCTTAACAAGTCTGCGTTTATGGTGAGCAGGAATGTGAGCAATGGAGA
CTCGAGGATGATTGATGAGATCCTCATCATAAAGAAAACAAACTCACTTGGCACATACCTGGGAATGGCATCACAAAGCGATCGAGGGAAGACACAAACCACATCATCTG
AAATTGCAAAAAGAGGAGGAAAAAAGAAGAAATTCTTACAACTTGACAAACAACAGACTGGAGAACCTTTTGAATCATGGAAGTTGGACCCCCTCTCGAAAAATGTCCTG
AAAATGAACTCCGACGCCTCGTGGAATGAAGACACAGCGACTGGTGGAGTGGGCTGGATAATTCGTGATTCATCAAGGTCTCTTGTCGATGCGAGCTGCAAGCAATTCAA
CCGGAAATGGTCAATCAAATCCTTGGAAGCGCTAGCAATCAAGGAAGGTTTACAGGAATACTCATCTGGCAATCGAAGAAGAAATGCTCCTCTGATGGTGGAGGTCGATG
ATCTGGGCGTTATCAGAATGCTGAATTTGGAAGAATATGACATCTCTGACACAAGAGTAGTGCTGAACGATATCTCTCCTTTGGCAGCAAAAGCAGGAGTGATTTCTTTC
TCTAAATGCCCTAGGGCGGGCAATCAGATCGCGCACCTTCTAGCGCGTGCAGCGATCGGATTCTTACCGGTGAACCCTCTATCGATTGACGCCGTCATCAGCTTTACTTT
CTCTCTTATGAATATGTCATTTGGTGGTTCCATATGGCTATGCTAG
Protein sequenceShow/hide protein sequence
MQNRENDVFKRYEEASGQMINLNKSAFMVSRNVSNGDSRMIDEILIIKKTNSLGTYLGMASQSDRGKTQTTSSEIAKRGGKKKKFLQLDKQQTGEPFESWKLDPLSKNVL
KMNSDASWNEDTATGGVGWIIRDSSRSLVDASCKQFNRKWSIKSLEALAIKEGLQEYSSGNRRRNAPLMVEVDDLGVIRMLNLEEYDISDTRVVLNDISPLAAKAGVISF
SKCPRAGNQIAHLLARAAIGFLPVNPLSIDAVISFTFSLMNMSFGGSIWLC