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Spg038966 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg038966
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRibonuclease H
Genome locationscaffold12:1042379..1045169
RNA-Seq ExpressionSpg038966
SyntenySpg038966
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_023916366.1 uncharacterized protein LOC112027956 [Quercus suber]4.8e-2446.58Show/hide
Query:  EAGPSRKKTRRSSPQRA-APDAKEPQGRAEPKARFDRYTPLTASLEQVFAAIQDTNLLKRPEKLRSNPDRRNRNKYCMFHGDHGHTTRECIQLRDEIEAL
        EA P R+  +   P++    D K+   +A P AR  +YTPL   LEQV   I+D   LK PEK+R +P++RNR+KYC FH DHGH T EC  L+ +IE L
Subjt:  EAGPSRKKTRRSSPQRA-APDAKEPQGRAEPKARFDRYTPLTASLEQVFAAIQDTNLLKRPEKLRSNPDRRNRNKYCMFHGDHGHTTRECIQLRDEIEAL

Query:  IREGYLKEFVGNDRSKRPLPDQGKGGANPPL-EIRTILGGPSGGES
        IR+G LK F+G D     L  + +  + PPL EIR I+GG S G+S
Subjt:  IREGYLKEFVGNDRSKRPLPDQGKGGANPPL-EIRTILGGPSGGES

XP_030924801.1 uncharacterized protein LOC115951796 [Quercus lobata]2.4e-2347.62Show/hide
Query:  EAGPSRKKTRRSSPQRA-APDAKEPQGR-AEPKARFDRYTPLTASLEQVFAAIQDTNLLKRPEKLRSNPDRRNRNKYCMFHGDHGHTTRECIQLRDEIEA
        EA P+R   +   P++    D KE  GR   P  R   YTPL A L QVF  I+D   LK PEK++ +P++RN+NKYC FH DHGH T EC  L+ +IE 
Subjt:  EAGPSRKKTRRSSPQRA-APDAKEPQGR-AEPKARFDRYTPLTASLEQVFAAIQDTNLLKRPEKLRSNPDRRNRNKYCMFHGDHGHTTRECIQLRDEIEA

Query:  LIREGYLKEFVGNDRSKRPLPDQGKGGANPPL-EIRTILGGPSGGES
        LIR+G LK FVG DR+   L  + +  + PPL EIR I+GG   G+S
Subjt:  LIREGYLKEFVGNDRSKRPLPDQGKGGANPPL-EIRTILGGPSGGES

XP_030955724.1 uncharacterized protein LOC115977839 [Quercus lobata]9.1e-2343.83Show/hide
Query:  EAGPSRKKTRRSSPQRA-APDAKEPQGR-AEPKARFDRYTPLTASLEQVFAAIQDTNLLKRPEKLRSNPDRRNRNKYCMFHGDHGHTTRECIQLRDEIEA
        EA P R   +   P++    D KE  GR   P  R   YTPL A L QV   I+D   LK PEK++ +P++RN+NKYC FH DHGH T EC  L+ +IE 
Subjt:  EAGPSRKKTRRSSPQRA-APDAKEPQGR-AEPKARFDRYTPLTASLEQVFAAIQDTNLLKRPEKLRSNPDRRNRNKYCMFHGDHGHTTRECIQLRDEIEA

Query:  LIREGYLKEFVGNDRSKRPLPDQGKGGANPPL-EIRTILGG-PSGGESVLRISFQKSTTTLE
        LIR+G LK FVG DR+   L  + +  + PPL EIR I+GG P G  S  + ++ K+   ++
Subjt:  LIREGYLKEFVGNDRSKRPLPDQGKGGANPPL-EIRTILGG-PSGGESVLRISFQKSTTTLE

XP_030958629.1 uncharacterized protein LOC115980536 [Quercus lobata]2.0e-2243.21Show/hide
Query:  EAGPSRKKTRRSSPQRA-APDAKEPQGR-AEPKARFDRYTPLTASLEQVFAAIQDTNLLKRPEKLRSNPDRRNRNKYCMFHGDHGHTTRECIQLRDEIEA
        EA P+R   +   P++    D KE  GR   P  R   YTPL A L QV   I+D   LK PEK++ +P++RN+NKYC FH DHGH T EC  L+ +IE 
Subjt:  EAGPSRKKTRRSSPQRA-APDAKEPQGR-AEPKARFDRYTPLTASLEQVFAAIQDTNLLKRPEKLRSNPDRRNRNKYCMFHGDHGHTTRECIQLRDEIEA

Query:  LIREGYLKEFVGNDRSKRPLPDQGKGGANPPL-EIRTILGG-PSGGESVLRISFQKSTTTLE
        LIR+G LK FVG DR+      + +  + PPL EIR I+GG P G  S  + ++ K+   ++
Subjt:  LIREGYLKEFVGNDRSKRPLPDQGKGGANPPL-EIRTILGG-PSGGESVLRISFQKSTTTLE

XP_030958631.1 uncharacterized protein LOC115980538 [Quercus lobata]2.0e-2243.21Show/hide
Query:  EAGPSRKKTRRSSPQRA-APDAKEPQGR-AEPKARFDRYTPLTASLEQVFAAIQDTNLLKRPEKLRSNPDRRNRNKYCMFHGDHGHTTRECIQLRDEIEA
        EA P+R   +   P++    D KE  GR   P  R   YTPL A L QV   I+D   LK PEK++ +P++RN+NKYC FH DHGH T EC  L+ +IE 
Subjt:  EAGPSRKKTRRSSPQRA-APDAKEPQGR-AEPKARFDRYTPLTASLEQVFAAIQDTNLLKRPEKLRSNPDRRNRNKYCMFHGDHGHTTRECIQLRDEIEA

Query:  LIREGYLKEFVGNDRSKRPLPDQGKGGANPPL-EIRTILGG-PSGGESVLRISFQKSTTTLE
        LIR+G LK FVG DR+      + +  + PPL EIR I+GG P G  S  + ++ K+   ++
Subjt:  LIREGYLKEFVGNDRSKRPLPDQGKGGANPPL-EIRTILGG-PSGGESVLRISFQKSTTTLE

TrEMBL top hitse value%identityAlignment
A0A6J1CNT2 uncharacterized protein LOC1110128053.3e-1835.76Show/hide
Query:  TEKEAGPSRKKTRR----SSPQRAAPDAKEPQGRAEPKARFDRYTPLTASLEQVFAAIQDTNLLKRPEKLRSNPDRRNRNKYCMFHGDHGHTTRECIQLR
        +++E+   R   +R      PQ +  + ++   + +P  +F++YT  T  LEQV   I++  LLK PE++ ++  +R++ +YC+FH DHGH T++C  L+
Subjt:  TEKEAGPSRKKTRR----SSPQRAAPDAKEPQGRAEPKARFDRYTPLTASLEQVFAAIQDTNLLKRPEKLRSNPDRRNRNKYCMFHGDHGHTTRECIQLR

Query:  DEIEALIREGYLKEFVGNDRSKRPLPDQGKGGANPPLEIRTILGGPSGGES
        +E+E LI  GYLKE+V   ++ +     G+   +P  EIRTI+GGP   ES
Subjt:  DEIEALIREGYLKEFVGNDRSKRPLPDQGKGGANPPLEIRTILGGPSGGES

A0A6J1D4A4 uncharacterized protein LOC1110174702.5e-1837.18Show/hide
Query:  EKEAGPSRKKTRRSSPQRAAPDAKEPQGRAEPKARFDRYTPLTASLEQVFAAIQDT---NLLKRPEKLRSNPDRRNRNKYCMFHGDHGHTTRECIQLRDE
        EK+   S+ + + SS   +  + +  +        ++RYTP T  + ++   I+++    LLKRPEKL+ +P++RN++KYC FH DH H T  C +L+ +
Subjt:  EKEAGPSRKKTRRSSPQRAAPDAKEPQGRAEPKARFDRYTPLTASLEQVFAAIQDT---NLLKRPEKLRSNPDRRNRNKYCMFHGDHGHTTRECIQLRDE

Query:  IEALIREGYLKEFVGNDRSKR-PLPDQGKGGANPPLE------IRTILGGPSGGES
        IE LI++GY K+FVG  RS      ++ K    PP        I TI GGPSGG+S
Subjt:  IEALIREGYLKEFVGNDRSKR-PLPDQGKGGANPPLE------IRTILGGPSGGES

A0A6J1DDR5 uncharacterized protein LOC1110201152.3e-1934.7Show/hide
Query:  EMGRNLTEILSLLKK----SESMRPEEEHVRRDPKKGKGIADEEVGDSESVTSRMPPPGDEQTEKEAGPSRKKTRRSSPQRAAPDAKEPQGRAEPKARFD
        E     TE+L   KK     E +R +     +   KG+   D+E  DS+S              K+ GPS   +R         D +           ++
Subjt:  EMGRNLTEILSLLKK----SESMRPEEEHVRRDPKKGKGIADEEVGDSESVTSRMPPPGDEQTEKEAGPSRKKTRRSSPQRAAPDAKEPQGRAEPKARFD

Query:  RYTPLTASLEQVFAAIQDT---NLLKRPEKLRSNPDRRNRNKYCMFHGDHGHTTRECIQLRDEIEALIREGYLKEFVGNDRS-KRPLPDQGKGGANPPLE
        RYTP T  + ++   I+++    LLKRPEKLR +P++RN++KYC+FH DHGH+T  C +L+ +IE LI++ Y K+FVG  RS      D+ K    PP  
Subjt:  RYTPLTASLEQVFAAIQDT---NLLKRPEKLRSNPDRRNRNKYCMFHGDHGHTTRECIQLRDEIEALIREGYLKEFVGNDRS-KRPLPDQGKGGANPPLE

Query:  ------IRTILGGPSGGES
              I TI GGPSGG+S
Subjt:  ------IRTILGGPSGGES

A0A6J1DWY0 uncharacterized protein LOC1110252937.0e-2134.13Show/hide
Query:  LTEILSLLKKSESMRPEEEHV-----RRDP---KKGKGIADEEVGDSESVTSRMPPPGDEQTEKEAGPSRKKTRRSSPQRAAPDAKEPQGRAEPKARFDR
        LT+ +SLL     +R  +EH+     +R P    +    A   +   E   S+  P G     K   P R+++    PQ +  + ++   + +P  +F++
Subjt:  LTEILSLLKKSESMRPEEEHV-----RRDP---KKGKGIADEEVGDSESVTSRMPPPGDEQTEKEAGPSRKKTRRSSPQRAAPDAKEPQGRAEPKARFDR

Query:  YTPLTASLEQVFAAIQDTNLLKRPEKLRSNPDRRNRNKYCMFHGDHGHTTRECIQLRDEIEALIREGYLKEFVGNDRSKRPLPDQGKGGANPPLEIRTIL
        YTP T  +EQV   I+D  LLK PE+++++  +R++ +YC+FH DHGH T++C  L++E+E LIR GYLKE+V   ++ +     G+   +P  EIRTI+
Subjt:  YTPLTASLEQVFAAIQDTNLLKRPEKLRSNPDRRNRNKYCMFHGDHGHTTRECIQLRDEIEALIREGYLKEFVGNDRSKRPLPDQGKGGANPPLEIRTIL

Query:  GGPSGGES
        GGP   ES
Subjt:  GGPSGGES

A0A6J1DZ52 uncharacterized protein LOC1110256125.4e-2143.7Show/hide
Query:  GRAEPKARFDRYTPLTASLEQVFAAIQDTNLLKRPEKLRSNPDRRNRNKYCMFHGDHGHTTRECIQLRDEIEALIREGYLKEFVGNDRSKRPLPDQGKGG
        G+ +   +F++YTP T  LEQV   I+D  LLK PE +++ P++R++ +YC+FH DHGH T +C  L++E+E LIR+GYLKE+V +    +  P++    
Subjt:  GRAEPKARFDRYTPLTASLEQVFAAIQDTNLLKRPEKLRSNPDRRNRNKYCMFHGDHGHTTRECIQLRDEIEALIREGYLKEFVGNDRSKRPLPDQGKGG

Query:  ANPPLEIRTILGGPSGGES
         +P  EIRTI+GG +  ES
Subjt:  ANPPLEIRTILGGPSGGES

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAACACCAAGGTCAGCCAGTGACTGACGAACCGAATCCCCAAGTTCGACTCCAAGCCCAAGAAATCGAGATCGCAGCGATCAAGGGAAGGATGAACGAGATGGGGCG
AAATTTGACTGAAATCCTCAGTCTGTTGAAGAAATCTGAGTCTATGAGGCCCGAGGAAGAGCATGTACGCAGAGACCCCAAGAAGGGTAAAGGAATAGCAGATGAGGAGG
TTGGAGATTCGGAGAGTGTAACTAGCCGAATGCCTCCTCCCGGGGACGAACAGACCGAAAAGGAAGCTGGACCAAGCCGCAAAAAGACCCGCAGGAGTTCTCCGCAAAGG
GCAGCACCAGATGCCAAGGAGCCACAAGGCCGTGCGGAGCCAAAGGCCCGGTTCGACAGGTATACACCACTAACAGCTTCGCTTGAACAGGTCTTTGCCGCGATACAGGA
CACGAATTTGTTGAAACGCCCAGAGAAGTTAAGATCAAACCCCGACAGGAGGAACAGAAACAAATACTGCATGTTCCACGGAGACCACGGACACACGACCCGAGAATGCA
TACAATTGAGAGACGAGATAGAAGCCCTAATCCGAGAAGGTTACCTCAAGGAGTTCGTGGGGAATGACAGAAGCAAGAGGCCACTGCCGGATCAGGGTAAGGGGGGAGCT
AACCCTCCGCTCGAGATACGAACAATTTTGGGAGGGCCATCCGGAGGAGAGTCAGTACTCCGAATTTCATTTCAGAAATCTACAACGACGCTTGAAGAGAGGCCCGGGAA
CTTCCTAGGCCTCCCCAAGCCCTTTCCCCAGAAGAGTGTACGCACCCCTGGGATGACTACGATGCTTGAAGAGAGACCCGGGAACTTCCTAGGCCTCCCCAAGCCCTTTC
CCCAGAAGAGTGTACGCACCCCTGGGATGACTATGATGCTTGAAGAGAGGCCCGGGAACTTCCTAGGCCTCCTCAAGCCCTTTCCCCAGAAGAGTGTACGCACCCCTGGG
ATGACTCCGATGCTTGAAGAGAGGCCCGGGAACTTCCTAGGCCTCCCCAAGCCCTTTCCCCAGAAGAGTGTACGCACCCCTGGGATGACTACGATGCTTGAAGAGAGGCC
CGGGAACTTCCTAGGCCTCCCCAAGCCTTTTCCCCAGAAGAGTGTACGCACCCCTGGGATGAACGCAACAGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAACACCAAGGTCAGCCAGTGACTGACGAACCGAATCCCCAAGTTCGACTCCAAGCCCAAGAAATCGAGATCGCAGCGATCAAGGGAAGGATGAACGAGATGGGGCG
AAATTTGACTGAAATCCTCAGTCTGTTGAAGAAATCTGAGTCTATGAGGCCCGAGGAAGAGCATGTACGCAGAGACCCCAAGAAGGGTAAAGGAATAGCAGATGAGGAGG
TTGGAGATTCGGAGAGTGTAACTAGCCGAATGCCTCCTCCCGGGGACGAACAGACCGAAAAGGAAGCTGGACCAAGCCGCAAAAAGACCCGCAGGAGTTCTCCGCAAAGG
GCAGCACCAGATGCCAAGGAGCCACAAGGCCGTGCGGAGCCAAAGGCCCGGTTCGACAGGTATACACCACTAACAGCTTCGCTTGAACAGGTCTTTGCCGCGATACAGGA
CACGAATTTGTTGAAACGCCCAGAGAAGTTAAGATCAAACCCCGACAGGAGGAACAGAAACAAATACTGCATGTTCCACGGAGACCACGGACACACGACCCGAGAATGCA
TACAATTGAGAGACGAGATAGAAGCCCTAATCCGAGAAGGTTACCTCAAGGAGTTCGTGGGGAATGACAGAAGCAAGAGGCCACTGCCGGATCAGGGTAAGGGGGGAGCT
AACCCTCCGCTCGAGATACGAACAATTTTGGGAGGGCCATCCGGAGGAGAGTCAGTACTCCGAATTTCATTTCAGAAATCTACAACGACGCTTGAAGAGAGGCCCGGGAA
CTTCCTAGGCCTCCCCAAGCCCTTTCCCCAGAAGAGTGTACGCACCCCTGGGATGACTACGATGCTTGAAGAGAGACCCGGGAACTTCCTAGGCCTCCCCAAGCCCTTTC
CCCAGAAGAGTGTACGCACCCCTGGGATGACTATGATGCTTGAAGAGAGGCCCGGGAACTTCCTAGGCCTCCTCAAGCCCTTTCCCCAGAAGAGTGTACGCACCCCTGGG
ATGACTCCGATGCTTGAAGAGAGGCCCGGGAACTTCCTAGGCCTCCCCAAGCCCTTTCCCCAGAAGAGTGTACGCACCCCTGGGATGACTACGATGCTTGAAGAGAGGCC
CGGGAACTTCCTAGGCCTCCCCAAGCCTTTTCCCCAGAAGAGTGTACGCACCCCTGGGATGAACGCAACAGCTTGA
Protein sequenceShow/hide protein sequence
MEHQGQPVTDEPNPQVRLQAQEIEIAAIKGRMNEMGRNLTEILSLLKKSESMRPEEEHVRRDPKKGKGIADEEVGDSESVTSRMPPPGDEQTEKEAGPSRKKTRRSSPQR
AAPDAKEPQGRAEPKARFDRYTPLTASLEQVFAAIQDTNLLKRPEKLRSNPDRRNRNKYCMFHGDHGHTTRECIQLRDEIEALIREGYLKEFVGNDRSKRPLPDQGKGGA
NPPLEIRTILGGPSGGESVLRISFQKSTTTLEERPGNFLGLPKPFPQKSVRTPGMTTMLEERPGNFLGLPKPFPQKSVRTPGMTMMLEERPGNFLGLLKPFPQKSVRTPG
MTPMLEERPGNFLGLPKPFPQKSVRTPGMTTMLEERPGNFLGLPKPFPQKSVRTPGMNATA