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Spg039086 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg039086
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold1:39636812..39641782
RNA-Seq ExpressionSpg039086
SyntenySpg039086
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051980.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.9e-2653.79Show/hide
Query:  LFGLSYTEGNKRPRGNKSSLQTGELDKT-----------------VEIEVPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNV
        LFGL Y EG KRPRGN++SLQTGELDKT                 VEIE+PVPDTLPTSAESS ++SSTW+EL  E VH+             ++++FNV
Subjt:  LFGLSYTEGNKRPRGNKSSLQTGELDKT-----------------VEIEVPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNV

Query:  QEGQRVSLEEDDVCWLHAIFRAKLAGGPGGGV
          G    +  D+VCWLHA+F AK AGGPGGGV
Subjt:  QEGQRVSLEEDDVCWLHAIFRAKLAGGPGGGV

KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]1.5e-2649.65Show/hide
Query:  NCQPLVFLFGLSYTEGNK----------------------RPRGNKSSLQTGELDKTVEIEVPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQ
        NCQPL+ LFGLSY E  +                       PRGN+ +L TG+LDKTVEIE+PVPDTLPTSAESS+++SSTW+ELY ESVH+  + +   
Subjt:  NCQPLVFLFGLSYTEGNK----------------------RPRGNKSSLQTGELDKTVEIEVPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQ

Query:  ----------EGQRVSLEEDDVCWLHAIFRAKLAGGPGGGV
                  EG    +  DD+CWLHA+F AK AG PGGGV
Subjt:  ----------EGQRVSLEEDDVCWLHAIFRAKLAGGPGGGV

KAA0067117.1 hypothetical protein E6C27_scaffold38G001760 [Cucumis melo var. makuwa]2.0e-2350Show/hide
Query:  LSYTEGNKRPRGNKSSLQTGELDKT-----------------VEIEVPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQ----------EGQRV
        +S  E  + PRGN+SSLQTGELDKT                 VEIE+PVPDTLPTSAES  ++SSTW+ELY E VH+  + +             EG   
Subjt:  LSYTEGNKRPRGNKSSLQTGELDKT-----------------VEIEVPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQ----------EGQRV

Query:  SLEEDDVCWLHAIFRAKLAGGPGGGVTSKL
         +  DDVCWLH +FRAK+AGGPGGGVT ++
Subjt:  SLEEDDVCWLHAIFRAKLAGGPGGGVTSKL

TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]3.1e-2453.12Show/hide
Query:  PRGNKSSLQTGELDKTV---------------EIEVPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVC
        PRGN+ SLQTGELDKTV                IE+PVPDTLPTSAESS ++SSTW+ELY ESVH+             ++++FNV  G    +  DDVC
Subjt:  PRGNKSSLQTGELDKTV---------------EIEVPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVC

Query:  WLHAIFRAKLAGGPGGGVTSKLSKPQNG
        WLHA+FRAK  GGPGGGVT+  S  Q G
Subjt:  WLHAIFRAKLAGGPGGGVTSKLSKPQNG

TYK25935.1 gag/pol protein [Cucumis melo var. makuwa]2.9e-2250.77Show/hide
Query:  YTEGNKR-PRGNKSSLQTGELDK-----------------TVEIEVPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQEGQRVS----------
        Y E +K  PRGN+  LQTGELDK                  VEIE+P+PDTLPTSAESS ++SSTW+ELY ESVH+  + +   + +  S          
Subjt:  YTEGNKR-PRGNKSSLQTGELDK-----------------TVEIEVPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQEGQRVS----------

Query:  LEEDDVCWLHAIFRAKLAGGPGGGVTSKLS
        +  DDVCWLHAIFRAK AGGPGGGVT   S
Subjt:  LEEDDVCWLHAIFRAKLAGGPGGGVTSKLS

TrEMBL top hitse value%identityAlignment
A0A5A7T9P7 Gag/pol protein1.4e-2250.77Show/hide
Query:  YTEGNKR-PRGNKSSLQTGELDK-----------------TVEIEVPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQEGQRVS----------
        Y E +K  PRGN+  LQTGELDK                  VEIE+P+PDTLPTSAESS ++SSTW+ELY ESVH+  + +   + +  S          
Subjt:  YTEGNKR-PRGNKSSLQTGELDK-----------------TVEIEVPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQEGQRVS----------

Query:  LEEDDVCWLHAIFRAKLAGGPGGGVTSKLS
        +  DDVCWLHAIFRAK AGGPGGGVT   S
Subjt:  LEEDDVCWLHAIFRAKLAGGPGGGVTSKLS

A0A5A7U9X4 DNA/RNA polymerases superfamily protein9.4e-2753.79Show/hide
Query:  LFGLSYTEGNKRPRGNKSSLQTGELDKT-----------------VEIEVPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNV
        LFGL Y EG KRPRGN++SLQTGELDKT                 VEIE+PVPDTLPTSAESS ++SSTW+EL  E VH+             ++++FNV
Subjt:  LFGLSYTEGNKRPRGNKSSLQTGELDKT-----------------VEIEVPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNV

Query:  QEGQRVSLEEDDVCWLHAIFRAKLAGGPGGGV
          G    +  D+VCWLHA+F AK AGGPGGGV
Subjt:  QEGQRVSLEEDDVCWLHAIFRAKLAGGPGGGV

A0A5A7UAH6 CCHC-type domain-containing protein7.2e-2749.65Show/hide
Query:  NCQPLVFLFGLSYTEGNK----------------------RPRGNKSSLQTGELDKTVEIEVPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQ
        NCQPL+ LFGLSY E  +                       PRGN+ +L TG+LDKTVEIE+PVPDTLPTSAESS+++SSTW+ELY ESVH+  + +   
Subjt:  NCQPLVFLFGLSYTEGNK----------------------RPRGNKSSLQTGELDKTVEIEVPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQ

Query:  ----------EGQRVSLEEDDVCWLHAIFRAKLAGGPGGGV
                  EG    +  DD+CWLHA+F AK AG PGGGV
Subjt:  ----------EGQRVSLEEDDVCWLHAIFRAKLAGGPGGGV

A0A5A7VIY9 Uncharacterized protein9.7e-2450Show/hide
Query:  LSYTEGNKRPRGNKSSLQTGELDKT-----------------VEIEVPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQ----------EGQRV
        +S  E  + PRGN+SSLQTGELDKT                 VEIE+PVPDTLPTSAES  ++SSTW+ELY E VH+  + +             EG   
Subjt:  LSYTEGNKRPRGNKSSLQTGELDKT-----------------VEIEVPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQ----------EGQRV

Query:  SLEEDDVCWLHAIFRAKLAGGPGGGVTSKL
         +  DDVCWLH +FRAK+AGGPGGGVT ++
Subjt:  SLEEDDVCWLHAIFRAKLAGGPGGGVTSKL

A0A5D3CJX3 CCHC-type domain-containing protein1.5e-2453.12Show/hide
Query:  PRGNKSSLQTGELDKTV---------------EIEVPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVC
        PRGN+ SLQTGELDKTV                IE+PVPDTLPTSAESS ++SSTW+ELY ESVH+             ++++FNV  G    +  DDVC
Subjt:  PRGNKSSLQTGELDKTV---------------EIEVPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVC

Query:  WLHAIFRAKLAGGPGGGVTSKLSKPQNG
        WLHA+FRAK  GGPGGGVT+  S  Q G
Subjt:  WLHAIFRAKLAGGPGGGVTSKLSKPQNG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GCACTTGAGGGAGAGAGTGAAGGAGGAAGAAGAAGAATATTTTCGTGGTTGAGGTTGAAGAAGATAGGAAAAGCTCATGCAAAGCCAGCCATAGCAGAATCTGGAATAGC
AGAGAACATCGAATCTGTGTTGTCTGTGTTCGGGGCAATTCTGGACAAATTGGCTGGGAATCTCGTTTTCATTTCTTCAGGTTATATTCTGTTGTTGACGTTGAGTGTAC
TCCGTGACAACGATGCTGTCGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGGGGGTCACGGGTATCGTTAGAG
GAGGACGATGTCCGTTGGCTTCACGCCATCTTTCGGGCTAAGCTAGCAGAGAACTTTAAGGAGAGAGTGAAGGAGGAAGGAGAAGAAGAATTTCGTGGTTTTGAGGTTGA
AGAAGATAAGAAAAGCTCATGCAAAGCCAGCCATAGCAGAATCTGGGTGCAAAACTGTCAACCTCTGGTTTTTTTATTCGGTTTGAGCTACACAGAAGGGAATAAGAGGC
CAAGAGGAAATAAGTCGAGTCTACAAACCGGGGAACTAGATAAGACAGTAGAGATCGAGGTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAGC
TCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTTCAACGTTCAGGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTCTGTTGGCT
TCACGCCATCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACATCCAAACTCTCTAAACCTCAAAACGGAGCAAAGTTTGGACCAAGTTCGTCCAAACCAT
ATGATTGGGACGAACTTTGGGTTCCGAGCTCTCAAAAACTGAAACGGAGCAAAGTTTTGACCATGTGTCGTCCAAACCACCTAAAGAACTCTCATTGGGCCGAAATTTGA
mRNA sequenceShow/hide mRNA sequence
GCACTTGAGGGAGAGAGTGAAGGAGGAAGAAGAAGAATATTTTCGTGGTTGAGGTTGAAGAAGATAGGAAAAGCTCATGCAAAGCCAGCCATAGCAGAATCTGGAATAGC
AGAGAACATCGAATCTGTGTTGTCTGTGTTCGGGGCAATTCTGGACAAATTGGCTGGGAATCTCGTTTTCATTTCTTCAGGTTATATTCTGTTGTTGACGTTGAGTGTAC
TCCGTGACAACGATGCTGTCGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGGGGGTCACGGGTATCGTTAGAG
GAGGACGATGTCCGTTGGCTTCACGCCATCTTTCGGGCTAAGCTAGCAGAGAACTTTAAGGAGAGAGTGAAGGAGGAAGGAGAAGAAGAATTTCGTGGTTTTGAGGTTGA
AGAAGATAAGAAAAGCTCATGCAAAGCCAGCCATAGCAGAATCTGGGTGCAAAACTGTCAACCTCTGGTTTTTTTATTCGGTTTGAGCTACACAGAAGGGAATAAGAGGC
CAAGAGGAAATAAGTCGAGTCTACAAACCGGGGAACTAGATAAGACAGTAGAGATCGAGGTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAGC
TCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTTCAACGTTCAGGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTCTGTTGGCT
TCACGCCATCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACATCCAAACTCTCTAAACCTCAAAACGGAGCAAAGTTTGGACCAAGTTCGTCCAAACCAT
ATGATTGGGACGAACTTTGGGTTCCGAGCTCTCAAAAACTGAAACGGAGCAAAGTTTTGACCATGTGTCGTCCAAACCACCTAAAGAACTCTCATTGGGCCGAAATTTGA
Protein sequenceShow/hide protein sequence
ALEGESEGGRRRIFSWLRLKKIGKAHAKPAIAESGIAENIESVLSVFGAILDKLAGNLVFISSGYILLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSRGSRVSLE
EDDVRWLHAIFRAKLAENFKERVKEEGEEEFRGFEVEEDKKSSCKASHSRIWVQNCQPLVFLFGLSYTEGNKRPRGNKSSLQTGELDKTVEIEVPVPDTLPTSAESSRTS
SSTWVELYIESVHIVNVLFNVQEGQRVSLEEDDVCWLHAIFRAKLAGGPGGGVTSKLSKPQNGAKFGPSSSKPYDWDELWVPSSQKLKRSKVLTMCRPNHLKNSHWAEI