; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg039095 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg039095
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposable element Tf2
Genome locationscaffold13:22445204..22452476
RNA-Seq ExpressionSpg039095
SyntenySpg039095
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN34145.1 hypothetical protein [Cucumis melo subsp. melo]2.6e-4266.67Show/hide
Query:  SRGRT--SSSRGSRPSSSST--PPPMSADQYAMDLGFTPVTRSRSRQGGIRPMPPMESSTPPPRPSANLVRPSGGVIQLRPPVSPSSIAGSSIPSSSTYS
        +RGRT  +SS+G RPSSSS   P PMSA QY MDLGFT VTRSRSR   I    P ESST PPRPS NL+RPSGGVIQ+RPP SPSS   SS P  +TYS
Subjt:  SRGRT--SSSRGSRPSSSST--PPPMSADQYAMDLGFTPVTRSRSRQGGIRPMPPMESSTPPPRPSANLVRPSGGVIQLRPPVSPSSIAGSSIPSSSTYS

Query:  QAVVPEKRFVPRPEIKSYFQKSQVIYEPIIEPEFQGLNLDETISNMYPTGFNFMPEDLNKTR
        QAV  +KRFVPRPEIKSYFQKS V+Y+PIIEPE+Q L L+E +S ++P  FNF+PEDL K +
Subjt:  QAVVPEKRFVPRPEIKSYFQKSQVIYEPIIEPEFQGLNLDETISNMYPTGFNFMPEDLNKTR

KAA0026217.1 hypothetical protein E6C27_scaffold19G001920 [Cucumis melo var. makuwa]5.5e-4065Show/hide
Query:  SRGRT--SSSRGSRPSSS--STPPPMSADQYAMDLGFTPVTRSRSRQGGIRPMPPMESSTPPPRPSANLVRPSGGVIQLRPPVSPSSIAGSSIPSSSTYS
        +RGRT  +SS+G+R SSS  S P PMSADQYAMDLGFT VTRSRSR  GI    P ESST PPRPSANL+RP G V+Q++PP SPSS   SS P  +TYS
Subjt:  SRGRT--SSSRGSRPSSS--STPPPMSADQYAMDLGFTPVTRSRSRQGGIRPMPPMESSTPPPRPSANLVRPSGGVIQLRPPVSPSSIAGSSIPSSSTYS

Query:  QAVVPEKRFVPRPEIKSYFQKSQVIYEPIIEPEFQGLNLDETISNMYPTGFNFMPEDLNK
        QAV P+KRFVPRP+IK YFQKS V+Y+P IE E+Q L L+E +S ++P  FNF+PEDL K
Subjt:  QAVVPEKRFVPRPEIKSYFQKSQVIYEPIIEPEFQGLNLDETISNMYPTGFNFMPEDLNK

KAA0043136.1 putative Retrotransposon protein [Cucumis melo var. makuwa]1.3e-4465.68Show/hide
Query:  SRGRT--SSSRGSRP--SSSSTPPPMSADQYAMDLGFTPVTRSRSRQGGIRPMPPMESSTPPPRPSANLVRPSGGVIQLRPPVSPSSIAGSSIPSSSTYS
        +RGRT  +SS+G+RP  SS+S P P+SADQYAMDLGFT VTR  SR  GI    P ESST PPRPS NL+RPS GV+Q+RPP SPSS   SS P  +TYS
Subjt:  SRGRT--SSSRGSRP--SSSSTPPPMSADQYAMDLGFTPVTRSRSRQGGIRPMPPMESSTPPPRPSANLVRPSGGVIQLRPPVSPSSIAGSSIPSSSTYS

Query:  QAVVPEKRFVPRPEIKSYFQKSQVIYEPIIEPEFQGLNLDETISNMYPTGFNFMPEDLNKTRTFYEFIL
        QAV P+KRFVPRPEIKSYFQK  V+Y+PIIE E+Q L  +ET+S ++P  FNF+ EDL KTR FYEFIL
Subjt:  QAVVPEKRFVPRPEIKSYFQKSQVIYEPIIEPEFQGLNLDETISNMYPTGFNFMPEDLNKTRTFYEFIL

KAA0066421.1 hypothetical protein E6C27_scaffold21G005030 [Cucumis melo var. makuwa]6.1e-3966.19Show/hide
Query:  MSADQYAMDLGFTPVTRSRSRQGGIRPMPPMESSTPPPRPSANLVRPSGGVIQLRPPVSPSSIAGSSIPSSSTYSQAVVPEKRFVPRPEIKSYFQKSQVI
        MSADQYAMDLGFT VTRSRSR   IR     ESST PPRPSANL+RP GG +Q+RPP SPSS   SS P  +TYSQ V P+KRFVPRPEIKSYFQKS V+
Subjt:  MSADQYAMDLGFTPVTRSRSRQGGIRPMPPMESSTPPPRPSANLVRPSGGVIQLRPPVSPSSIAGSSIPSSSTYSQAVVPEKRFVPRPEIKSYFQKSQVI

Query:  YEPIIEPEFQGLNLDETISNMYPTGFNFMPEDLNKTRTF
        Y+ IIEPE+Q + L++T+S ++   FN +PEDL KTR F
Subjt:  YEPIIEPEFQGLNLDETISNMYPTGFNFMPEDLNKTRTF

KAE8646253.1 hypothetical protein Csa_023844, partial [Cucumis sativus]8.8e-3861.29Show/hide
Query:  RGRTSSSRGSRPSSS--STPPPMSADQYAMDLGFTPVTRSRSRQGGIRPMPPMESSTPPPRPSANLVRPSGGVIQLRPPVSPSSIAGSSIPSSSTYSQAV
        R  ++SSRG+RPSSS  S P PMSADQYAMDLGFT VTRSR+R   I+   P +SST PPR SANL+RPS  V+Q+RP  SP S   SS P  +TYSQ +
Subjt:  RGRTSSSRGSRPSSS--STPPPMSADQYAMDLGFTPVTRSRSRQGGIRPMPPMESSTPPPRPSANLVRPSGGVIQLRPPVSPSSIAGSSIPSSSTYSQAV

Query:  VPEKRFVPRPEIKSYFQKSQVIYEPIIEPEFQGLNLDETISNMYPTGFNFMPEDL
         P+KRFVPR EIKSYFQK  ++Y+ IIEPE+Q L L+ET+S ++P  FNF+P+DL
Subjt:  VPEKRFVPRPEIKSYFQKSQVIYEPIIEPEFQGLNLDETISNMYPTGFNFMPEDL

TrEMBL top hitse value%identityAlignment
A0A5A7T975 Enzymatic polyprotein1.0e-3636.39Show/hide
Query:  MSADQYAMDLGFTPVTRSRSRQGGIRPMPPMESSTPPPRPSANLVRPSGGVIQLRPPVSP-SSIAGSSIP-SSSTYSQAVVPEKRFVPRPEIKSYFQKSQ
        MSA+ YAMDL F  V+R R            +SS+ PP PS  L+RPSG     +   SP +S + S+IP + S+YSQ V P K F PRP I  YF K+ 
Subjt:  MSADQYAMDLGFTPVTRSRSRQGGIRPMPPMESSTPPPRPSANLVRPSGGVIQLRPPVSP-SSIAGSSIP-SSSTYSQAVVPEKRFVPRPEIKSYFQKSQ

Query:  VIYEPIIEPEFQGLNLDETISNMYPTGFNFMPEDLNKTRTFYEFIL--------------DAPTRMSLHGRFRITSSISSIKWAASHSVSRISNQPQYKT
        ++ +  IEPEF G ++ E  S ++P GFNF+PEDL+KTRTFYE+IL              + P+++ ++ + RI   ++   W     +  + N   +K 
Subjt:  VIYEPIIEPEFQGLNLDETISNMYPTGFNFMPEDLNKTRTFYEFIL--------------DAPTRMSLHGRFRITSSISSIKWAASHSVSRISNQPQYKT

Query:  VIKILKIKWWDKFNFQNATLNKIKEWFAANGYLQDIDIKRNAEFLNDKSKLLAALAQTTSDADFQRILQMAASDRSE---------SPASSAQEGEKSEP
        + K L+IKWW+KFN+ +  +NKIK+WF AN +LQD+  + +  FL  K+ +++ L   ++  +F  ++     + S+         SPAS     +    
Subjt:  VIKILKIKWWDKFNFQNATLNKIKEWFAANGYLQDIDIKRNAEFLNDKSKLLAALAQTTSDADFQRILQMAASDRSE---------SPASSAQEGEKSEP

Query:  DY---DLDDPFLDSQP
         Y   D++DPFLD+QP
Subjt:  DY---DLDDPFLDSQP

A0A5A7TM80 Putative Retrotransposon protein6.1e-4565.68Show/hide
Query:  SRGRT--SSSRGSRP--SSSSTPPPMSADQYAMDLGFTPVTRSRSRQGGIRPMPPMESSTPPPRPSANLVRPSGGVIQLRPPVSPSSIAGSSIPSSSTYS
        +RGRT  +SS+G+RP  SS+S P P+SADQYAMDLGFT VTR  SR  GI    P ESST PPRPS NL+RPS GV+Q+RPP SPSS   SS P  +TYS
Subjt:  SRGRT--SSSRGSRP--SSSSTPPPMSADQYAMDLGFTPVTRSRSRQGGIRPMPPMESSTPPPRPSANLVRPSGGVIQLRPPVSPSSIAGSSIPSSSTYS

Query:  QAVVPEKRFVPRPEIKSYFQKSQVIYEPIIEPEFQGLNLDETISNMYPTGFNFMPEDLNKTRTFYEFIL
        QAV P+KRFVPRPEIKSYFQK  V+Y+PIIE E+Q L  +ET+S ++P  FNF+ EDL KTR FYEFIL
Subjt:  QAVVPEKRFVPRPEIKSYFQKSQVIYEPIIEPEFQGLNLDETISNMYPTGFNFMPEDLNKTRTFYEFIL

A0A5D3BM67 Uncharacterized protein2.9e-3966.19Show/hide
Query:  MSADQYAMDLGFTPVTRSRSRQGGIRPMPPMESSTPPPRPSANLVRPSGGVIQLRPPVSPSSIAGSSIPSSSTYSQAVVPEKRFVPRPEIKSYFQKSQVI
        MSADQYAMDLGFT VTRSRSR   IR     ESST PPRPSANL+RP GG +Q+RPP SPSS   SS P  +TYSQ V P+KRFVPRPEIKSYFQKS V+
Subjt:  MSADQYAMDLGFTPVTRSRSRQGGIRPMPPMESSTPPPRPSANLVRPSGGVIQLRPPVSPSSIAGSSIPSSSTYSQAVVPEKRFVPRPEIKSYFQKSQVI

Query:  YEPIIEPEFQGLNLDETISNMYPTGFNFMPEDLNKTRTF
        Y+ IIEPE+Q + L++T+S ++   FN +PEDL KTR F
Subjt:  YEPIIEPEFQGLNLDETISNMYPTGFNFMPEDLNKTRTF

A0A5D3E4J4 Uncharacterized protein2.7e-4065Show/hide
Query:  SRGRT--SSSRGSRPSSS--STPPPMSADQYAMDLGFTPVTRSRSRQGGIRPMPPMESSTPPPRPSANLVRPSGGVIQLRPPVSPSSIAGSSIPSSSTYS
        +RGRT  +SS+G+R SSS  S P PMSADQYAMDLGFT VTRSRSR  GI    P ESST PPRPSANL+RP G V+Q++PP SPSS   SS P  +TYS
Subjt:  SRGRT--SSSRGSRPSSS--STPPPMSADQYAMDLGFTPVTRSRSRQGGIRPMPPMESSTPPPRPSANLVRPSGGVIQLRPPVSPSSIAGSSIPSSSTYS

Query:  QAVVPEKRFVPRPEIKSYFQKSQVIYEPIIEPEFQGLNLDETISNMYPTGFNFMPEDLNK
        QAV P+KRFVPRP+IK YFQKS V+Y+P IE E+Q L L+E +S ++P  FNF+PEDL K
Subjt:  QAVVPEKRFVPRPEIKSYFQKSQVIYEPIIEPEFQGLNLDETISNMYPTGFNFMPEDLNK

E5GCE6 Uncharacterized protein1.3e-4266.67Show/hide
Query:  SRGRT--SSSRGSRPSSSST--PPPMSADQYAMDLGFTPVTRSRSRQGGIRPMPPMESSTPPPRPSANLVRPSGGVIQLRPPVSPSSIAGSSIPSSSTYS
        +RGRT  +SS+G RPSSSS   P PMSA QY MDLGFT VTRSRSR   I    P ESST PPRPS NL+RPSGGVIQ+RPP SPSS   SS P  +TYS
Subjt:  SRGRT--SSSRGSRPSSSST--PPPMSADQYAMDLGFTPVTRSRSRQGGIRPMPPMESSTPPPRPSANLVRPSGGVIQLRPPVSPSSIAGSSIPSSSTYS

Query:  QAVVPEKRFVPRPEIKSYFQKSQVIYEPIIEPEFQGLNLDETISNMYPTGFNFMPEDLNKTR
        QAV  +KRFVPRPEIKSYFQKS V+Y+PIIEPE+Q L L+E +S ++P  FNF+PEDL K +
Subjt:  QAVVPEKRFVPRPEIKSYFQKSQVIYEPIIEPEFQGLNLDETISNMYPTGFNFMPEDLNKTR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCGGAAGTAGAGGCAGAACCTCCTCTTCAAGGGGCAGTCGCCCATCTTCCTCCTCAACACCTCCTCCTATGAGTGCTGATCAATATGCCATGGATTTAGGGTTTAC
TCCGGTAACCCGATCCAGGTCCAGGCAAGGCGGTATACGTCCGATGCCTCCAATGGAGTCATCCACTCCACCTCCAAGGCCTTCGGCCAACCTTGTCCGTCCTTCTGGCG
GAGTTATTCAATTGAGACCTCCTGTCTCACCTTCTTCAATAGCAGGATCATCAATTCCGTCTTCTTCAACTTATTCTCAGGCAGTAGTACCTGAAAAAAGGTTTGTACCT
CGTCCTGAGATTAAGTCTTATTTCCAAAAATCCCAGGTTATCTATGAACCTATCATAGAACCTGAATTCCAGGGTCTTAACCTAGACGAGACCATTTCAAACATGTATCC
TACAGGTTTTAATTTCATGCCTGAGGATCTCAATAAGACAAGAACTTTCTATGAGTTTATCTTAGACGCCCCCACTCGCATGTCTCTACATGGACGATTTAGGATCACAT
CGTCTATATCATCTATAAAGTGGGCCGCGTCTCATAGTGTCTCCAGAATAAGCAATCAACCCCAGTATAAAACTGTCATCAAGATCCTCAAGATCAAATGGTGGGACAAA
TTCAATTTCCAGAACGCCACCCTTAACAAGATAAAAGAGTGGTTTGCAGCAAATGGATATCTTCAAGATATCGACATCAAAAGAAATGCAGAATTTCTAAATGACAAGTC
CAAGCTTCTGGCAGCTCTCGCTCAGACAACTTCTGATGCAGACTTCCAGAGAATCCTTCAAATGGCAGCTTCAGACAGAAGCGAGTCACCAGCTTCTTCTGCACAAGAAG
GAGAAAAAAGTGAGCCAGACTACGATCTGGACGATCCGTTCCTCGACTCACAACCCATCACAGCTTTAGAAGATGAAGCAGCACAGCAATCAAGACCAAAAATTCTATAT
TTTGAAAGCGAAGGGGTCATGTCCTGGATCAAGCGAAAATTTGGAATTCCCCAGAAATGCGACCGCATTTCTGGGAAGGCAAAAATGAAATGCGACTGCATTTCTGGAAA
AACAGAAGTCGTTCCGAGTCGCACGCGGATCGTTGTTGACGAGTCTTCTTTGCACCTAACCGGAAAAGCTCATGCAAAGCCAGTCATAGCAGAATCTGAGTTCAACCTGT
CAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAGGAACTAAGAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTTCTCTTGTTTTTCGACCATTC
TGGGGTGTACAAGTTGAATCAGAAGCTCTATTTGGTATGGTTGGAAAGCTTATTCAATTTCCTACAACTTTCATGAATAATTGGCCAAGAGGAAATAGGTCGAGTCTACA
AACCAGGGAACTAGATAAGACAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGCTCCAGATCAAGCTCCAGTACGTGGGTGGAGTTGTATA
TTGAGTTCAACGTTCAAGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAAGGGACTTT
GCATGCTATGTGAGTTTGATCTCGAAAGGGACAAACGATATCGGTTCTCATAAAGGTGATATAGGAGAAAAAGCTCGAAAGAGATTGTTCGGCGATATAGGGCAAGCTGC
CTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGCGGAAGTAGAGGCAGAACCTCCTCTTCAAGGGGCAGTCGCCCATCTTCCTCCTCAACACCTCCTCCTATGAGTGCTGATCAATATGCCATGGATTTAGGGTTTAC
TCCGGTAACCCGATCCAGGTCCAGGCAAGGCGGTATACGTCCGATGCCTCCAATGGAGTCATCCACTCCACCTCCAAGGCCTTCGGCCAACCTTGTCCGTCCTTCTGGCG
GAGTTATTCAATTGAGACCTCCTGTCTCACCTTCTTCAATAGCAGGATCATCAATTCCGTCTTCTTCAACTTATTCTCAGGCAGTAGTACCTGAAAAAAGGTTTGTACCT
CGTCCTGAGATTAAGTCTTATTTCCAAAAATCCCAGGTTATCTATGAACCTATCATAGAACCTGAATTCCAGGGTCTTAACCTAGACGAGACCATTTCAAACATGTATCC
TACAGGTTTTAATTTCATGCCTGAGGATCTCAATAAGACAAGAACTTTCTATGAGTTTATCTTAGACGCCCCCACTCGCATGTCTCTACATGGACGATTTAGGATCACAT
CGTCTATATCATCTATAAAGTGGGCCGCGTCTCATAGTGTCTCCAGAATAAGCAATCAACCCCAGTATAAAACTGTCATCAAGATCCTCAAGATCAAATGGTGGGACAAA
TTCAATTTCCAGAACGCCACCCTTAACAAGATAAAAGAGTGGTTTGCAGCAAATGGATATCTTCAAGATATCGACATCAAAAGAAATGCAGAATTTCTAAATGACAAGTC
CAAGCTTCTGGCAGCTCTCGCTCAGACAACTTCTGATGCAGACTTCCAGAGAATCCTTCAAATGGCAGCTTCAGACAGAAGCGAGTCACCAGCTTCTTCTGCACAAGAAG
GAGAAAAAAGTGAGCCAGACTACGATCTGGACGATCCGTTCCTCGACTCACAACCCATCACAGCTTTAGAAGATGAAGCAGCACAGCAATCAAGACCAAAAATTCTATAT
TTTGAAAGCGAAGGGGTCATGTCCTGGATCAAGCGAAAATTTGGAATTCCCCAGAAATGCGACCGCATTTCTGGGAAGGCAAAAATGAAATGCGACTGCATTTCTGGAAA
AACAGAAGTCGTTCCGAGTCGCACGCGGATCGTTGTTGACGAGTCTTCTTTGCACCTAACCGGAAAAGCTCATGCAAAGCCAGTCATAGCAGAATCTGAGTTCAACCTGT
CAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAGGAACTAAGAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTTCTCTTGTTTTTCGACCATTC
TGGGGTGTACAAGTTGAATCAGAAGCTCTATTTGGTATGGTTGGAAAGCTTATTCAATTTCCTACAACTTTCATGAATAATTGGCCAAGAGGAAATAGGTCGAGTCTACA
AACCAGGGAACTAGATAAGACAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGCTCCAGATCAAGCTCCAGTACGTGGGTGGAGTTGTATA
TTGAGTTCAACGTTCAAGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAAGGGACTTT
GCATGCTATGTGAGTTTGATCTCGAAAGGGACAAACGATATCGGTTCTCATAAAGGTGATATAGGAGAAAAAGCTCGAAAGAGATTGTTCGGCGATATAGGGCAAGCTGC
CTAA
Protein sequenceShow/hide protein sequence
MSGSRGRTSSSRGSRPSSSSTPPPMSADQYAMDLGFTPVTRSRSRQGGIRPMPPMESSTPPPRPSANLVRPSGGVIQLRPPVSPSSIAGSSIPSSSTYSQAVVPEKRFVP
RPEIKSYFQKSQVIYEPIIEPEFQGLNLDETISNMYPTGFNFMPEDLNKTRTFYEFILDAPTRMSLHGRFRITSSISSIKWAASHSVSRISNQPQYKTVIKILKIKWWDK
FNFQNATLNKIKEWFAANGYLQDIDIKRNAEFLNDKSKLLAALAQTTSDADFQRILQMAASDRSESPASSAQEGEKSEPDYDLDDPFLDSQPITALEDEAAQQSRPKILY
FESEGVMSWIKRKFGIPQKCDRISGKAKMKCDCISGKTEVVPSRTRIVVDESSLHLTGKAHAKPVIAESEFNLSTSGFLFGLSYTEGTKRAQDFRAKQEDLWFSLVFRPF
WGVQVESEALFGMVGKLIQFPTTFMNNWPRGNRSSLQTRELDKTVEIELPVPDTLPTSAESSRSSSSTWVELYIEFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGRDF
ACYVSLISKGTNDIGSHKGDIGEKARKRLFGDIGQAA