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Spg039100 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg039100
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold13:22603984..22606181
RNA-Seq ExpressionSpg039100
SyntenySpg039100
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037787.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.0e-0858.21Show/hide
Query:  EVYKLNQKLYLVEIELPVPDTLPTSVESSRTSSSSMLQESQRVSLEEDDVRWLHAIFRTELPGGLGG
        EV+KLNQKLYLVEIELPV DTLPTS ESS ++S S         +  DDV WL  +FR +  GG GG
Subjt:  EVYKLNQKLYLVEIELPVPDTLPTSVESSRTSSSSMLQESQRVSLEEDDVRWLHAIFRTELPGGLGG

KAA0042035.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.8e-0646.91Show/hide
Query:  FEHSEVYKLNQKLYLVEIELPVPDTLPTSVESSRTSSSSMLQ---ESQRVS-------LEEDDVRWLHAIFRTELPGGLGG
        F  S +  L     +VEIELP+PDTLPTS ESS ++SS++L+   ES  V        +  DDV WLHA+FR +  GG GG
Subjt:  FEHSEVYKLNQKLYLVEIELPVPDTLPTSVESSRTSSSSMLQ---ESQRVS-------LEEDDVRWLHAIFRTELPGGLGG

KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]1.8e-0653.73Show/hide
Query:  LVEIELPVPDTLPTSVESSRTSSSSMLQ---ESQRVSL-------EEDDVRWLHAIFRTELPGGLGG
        +VEIELPVPDTLPTS ESS ++SS+ L+   E   V +        EDDV WLHA+FR +  GG GG
Subjt:  LVEIELPVPDTLPTSVESSRTSSSSMLQ---ESQRVSL-------EEDDVRWLHAIFRTELPGGLGG

TYK27281.1 uncharacterized protein E5676_scaffold244G00490 [Cucumis melo var. makuwa]8.2e-0748.1Show/hide
Query:  FEHSEVYKLNQKLYLVEIELPVPDTLPT--------SVESSRTSSSSMLQESQRVSLEEDDVRWLHAIFRTELPGGLGG
        F   EV+K NQKLYLVEIELPVPDTLP            S   ++S +  E     +  DDV WLHA+FR +  GG GG
Subjt:  FEHSEVYKLNQKLYLVEIELPVPDTLPT--------SVESSRTSSSSMLQESQRVSLEEDDVRWLHAIFRTELPGGLGG

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]1.8e-0653.73Show/hide
Query:  LVEIELPVPDTLPTSVESSRTSSSSMLQ---ESQRVSL-------EEDDVRWLHAIFRTELPGGLGG
        +VEIELPVPDTLPTS ESS ++SS+ L+   E   V +        EDDV WLHA+FR +  GG GG
Subjt:  LVEIELPVPDTLPTSVESSRTSSSSMLQ---ESQRVSL-------EEDDVRWLHAIFRTELPGGLGG

TrEMBL top hitse value%identityAlignment
A0A5A7TKT0 Reverse transcriptase8.9e-0746.91Show/hide
Query:  FEHSEVYKLNQKLYLVEIELPVPDTLPTSVESSRTSSSSMLQ---ESQRVS-------LEEDDVRWLHAIFRTELPGGLGG
        F  S +  L     +VEIELP+PDTLPTS ESS ++SS++L+   ES  V        +  DDV WLHA+FR +  GG GG
Subjt:  FEHSEVYKLNQKLYLVEIELPVPDTLPTSVESSRTSSSSMLQ---ESQRVS-------LEEDDVRWLHAIFRTELPGGLGG

A0A5A7VMG9 Reverse transcriptase8.9e-0753.73Show/hide
Query:  LVEIELPVPDTLPTSVESSRTSSSSMLQ---ESQRVSL-------EEDDVRWLHAIFRTELPGGLGG
        +VEIELPVPDTLPTS ESS ++SS+ L+   E   V +        EDDV WLHA+FR +  GG GG
Subjt:  LVEIELPVPDTLPTSVESSRTSSSSMLQ---ESQRVSL-------EEDDVRWLHAIFRTELPGGLGG

A0A5D3DUB7 Uncharacterized protein4.0e-0748.1Show/hide
Query:  FEHSEVYKLNQKLYLVEIELPVPDTLPT--------SVESSRTSSSSMLQESQRVSLEEDDVRWLHAIFRTELPGGLGG
        F   EV+K NQKLYLVEIELPVPDTLP            S   ++S +  E     +  DDV WLHA+FR +  GG GG
Subjt:  FEHSEVYKLNQKLYLVEIELPVPDTLPT--------SVESSRTSSSSMLQESQRVSLEEDDVRWLHAIFRTELPGGLGG

A0A5D3DVK1 Ty3-gypsy retrotransposon protein9.5e-0958.21Show/hide
Query:  EVYKLNQKLYLVEIELPVPDTLPTSVESSRTSSSSMLQESQRVSLEEDDVRWLHAIFRTELPGGLGG
        EV+KLNQKLYLVEIELPV DTLPTS ESS ++S S         +  DDV WL  +FR +  GG GG
Subjt:  EVYKLNQKLYLVEIELPVPDTLPTSVESSRTSSSSMLQESQRVSLEEDDVRWLHAIFRTELPGGLGG

A0A5D3DX39 Reverse transcriptase8.9e-0753.73Show/hide
Query:  LVEIELPVPDTLPTSVESSRTSSSSMLQ---ESQRVSL-------EEDDVRWLHAIFRTELPGGLGG
        +VEIELPVPDTLPTS ESS ++SS+ L+   E   V +        EDDV WLHA+FR +  GG GG
Subjt:  LVEIELPVPDTLPTSVESSRTSSSSMLQ---ESQRVSL-------EEDDVRWLHAIFRTELPGGLGG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAAAGCATTATGAGCACAGGATTTTCGAGCAAACCAGGAGGATCTCTGGTGTTCTCTGGTGTTTTGAGCATTCTGAGGTGTACAAGTTGAATCAGAAGCTCTATTT
GGTAGAGATCGAGCTCCCAGTGCCTGATACACTGCCAACGTCTGTTGAAAGTTCCAGAACAAGCTCCAGTTCAATGTTACAGGAGAGTCAACGGGTATCGTTAGAGGAGG
ATGATGTTCGTTGGCTTCACGCCATCTTTCGGACTGAGTTACCAGGTGGTCTGGGAGGG
mRNA sequenceShow/hide mRNA sequence
ATGGCAAAGCATTATGAGCACAGGATTTTCGAGCAAACCAGGAGGATCTCTGGTGTTCTCTGGTGTTTTGAGCATTCTGAGGTGTACAAGTTGAATCAGAAGCTCTATTT
GGTAGAGATCGAGCTCCCAGTGCCTGATACACTGCCAACGTCTGTTGAAAGTTCCAGAACAAGCTCCAGTTCAATGTTACAGGAGAGTCAACGGGTATCGTTAGAGGAGG
ATGATGTTCGTTGGCTTCACGCCATCTTTCGGACTGAGTTACCAGGTGGTCTGGGAGGG
Protein sequenceShow/hide protein sequence
MAKHYEHRIFEQTRRISGVLWCFEHSEVYKLNQKLYLVEIELPVPDTLPTSVESSRTSSSSMLQESQRVSLEEDDVRWLHAIFRTELPGGLGG