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Spg039101 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg039101
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationscaffold13:23101776..23107761
RNA-Seq ExpressionSpg039101
SyntenySpg039101
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004518 - nuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042035.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.1e-3070.37Show/hide
Query:  LVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYYVNILFNVQEGQQVPLEEDDVHWLHAIFRAKLAGGPGGGVMPPRTSRRRRQNQDGMQDPTESQSE
        +VEIELP+PDTLPTSAESS S+SST +ELY ESV+          G    +  DDV WLHA+FRAK  GGPGGGVMPPRTSRRRRQNQDG QDPT+ QSE
Subjt:  LVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYYVNILFNVQEGQQVPLEEDDVHWLHAIFRAKLAGGPGGGVMPPRTSRRRRQNQDGMQDPTESQSE

Query:  RGSSTPRG
        RGSSTPRG
Subjt:  RGSSTPRG

KAA0051980.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.5e-3165.29Show/hide
Query:  LVEIELPVPDTLPTSAESSRSSSSTWVEL-----YIESVYY--------VNILFNVQEGQQVPLEEDDVHWLHAIFRAKLAGGPGGGVMPPRTSRRRRQN
        +VEIELPVPDTLPTSAESS S+SSTW+EL     ++E  YY        ++++FNV  G    +  D+V WLHA+F AK AGGPGGGVMPPRTSRRRRQN
Subjt:  LVEIELPVPDTLPTSAESSRSSSSTWVEL-----YIESVYY--------VNILFNVQEGQQVPLEEDDVHWLHAIFRAKLAGGPGGGVMPPRTSRRRRQN

Query:  QDGMQDPTESQSERGSSTPRG
        QD MQDPT+ QSERGSSTPRG
Subjt:  QDGMQDPTESQSERGSSTPRG

KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]5.6e-3165.81Show/hide
Query:  VEIELPVPDTLPTSAESSRSSSSTWVELYIESVYYVNILFNVQ----------EGQQVPLEEDDVHWLHAIFRAKLAGGPGGGVMPPRTSRRRRQNQDGM
        VEIELPVPDTLPTSAESS+S+SSTW+ELY ESV+   + +             EG    +  DD+ WLHA+F AK AG PGGGVMPPRTSRRRRQNQDGM
Subjt:  VEIELPVPDTLPTSAESSRSSSSTWVELYIESVYYVNILFNVQ----------EGQQVPLEEDDVHWLHAIFRAKLAGGPGGGVMPPRTSRRRRQNQDGM

Query:  QDPTESQSERGSSTPRG
        Q PT+ QSERGSSTPRG
Subjt:  QDPTESQSERGSSTPRG

TYK17971.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.1e-3070.37Show/hide
Query:  LVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYYVNILFNVQEGQQVPLEEDDVHWLHAIFRAKLAGGPGGGVMPPRTSRRRRQNQDGMQDPTESQSE
        +VEIELP+PDTLPTSAESS S+SST +ELY ESV+          G    +  DDV WLHA+FRAK  GGPGGGVMPPRTSRRRRQNQDG QDPT+ QSE
Subjt:  LVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYYVNILFNVQEGQQVPLEEDDVHWLHAIFRAKLAGGPGGGVMPPRTSRRRRQNQDGMQDPTESQSE

Query:  RGSSTPRG
        RGSSTPRG
Subjt:  RGSSTPRG

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]2.8e-3070.37Show/hide
Query:  LVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYYVNILFNVQEGQQVPLEEDDVHWLHAIFRAKLAGGPGGGVMPPRTSRRRRQNQDGMQDPTESQSE
        +VEIELPVPDTLPTSAESS S+SSTW+ELY+E   +V++      G    + EDDV WLHA+FRAK AGGPGGGVMPP TS+RRR NQDGMQ PT+ QSE
Subjt:  LVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYYVNILFNVQEGQQVPLEEDDVHWLHAIFRAKLAGGPGGGVMPPRTSRRRRQNQDGMQDPTESQSE

Query:  RGSSTPRG
        RGSSTPRG
Subjt:  RGSSTPRG

TrEMBL top hitse value%identityAlignment
A0A5A7TKT0 Reverse transcriptase1.0e-3070.37Show/hide
Query:  LVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYYVNILFNVQEGQQVPLEEDDVHWLHAIFRAKLAGGPGGGVMPPRTSRRRRQNQDGMQDPTESQSE
        +VEIELP+PDTLPTSAESS S+SST +ELY ESV+          G    +  DDV WLHA+FRAK  GGPGGGVMPPRTSRRRRQNQDG QDPT+ QSE
Subjt:  LVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYYVNILFNVQEGQQVPLEEDDVHWLHAIFRAKLAGGPGGGVMPPRTSRRRRQNQDGMQDPTESQSE

Query:  RGSSTPRG
        RGSSTPRG
Subjt:  RGSSTPRG

A0A5A7U9X4 DNA/RNA polymerases superfamily protein1.2e-3165.29Show/hide
Query:  LVEIELPVPDTLPTSAESSRSSSSTWVEL-----YIESVYY--------VNILFNVQEGQQVPLEEDDVHWLHAIFRAKLAGGPGGGVMPPRTSRRRRQN
        +VEIELPVPDTLPTSAESS S+SSTW+EL     ++E  YY        ++++FNV  G    +  D+V WLHA+F AK AGGPGGGVMPPRTSRRRRQN
Subjt:  LVEIELPVPDTLPTSAESSRSSSSTWVEL-----YIESVYY--------VNILFNVQEGQQVPLEEDDVHWLHAIFRAKLAGGPGGGVMPPRTSRRRRQN

Query:  QDGMQDPTESQSERGSSTPRG
        QD MQDPT+ QSERGSSTPRG
Subjt:  QDGMQDPTESQSERGSSTPRG

A0A5A7UAH6 CCHC-type domain-containing protein2.7e-3165.81Show/hide
Query:  VEIELPVPDTLPTSAESSRSSSSTWVELYIESVYYVNILFNVQ----------EGQQVPLEEDDVHWLHAIFRAKLAGGPGGGVMPPRTSRRRRQNQDGM
        VEIELPVPDTLPTSAESS+S+SSTW+ELY ESV+   + +             EG    +  DD+ WLHA+F AK AG PGGGVMPPRTSRRRRQNQDGM
Subjt:  VEIELPVPDTLPTSAESSRSSSSTWVELYIESVYYVNILFNVQ----------EGQQVPLEEDDVHWLHAIFRAKLAGGPGGGVMPPRTSRRRRQNQDGM

Query:  QDPTESQSERGSSTPRG
        Q PT+ QSERGSSTPRG
Subjt:  QDPTESQSERGSSTPRG

A0A5D3D150 Reverse transcriptase1.0e-3070.37Show/hide
Query:  LVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYYVNILFNVQEGQQVPLEEDDVHWLHAIFRAKLAGGPGGGVMPPRTSRRRRQNQDGMQDPTESQSE
        +VEIELP+PDTLPTSAESS S+SST +ELY ESV+          G    +  DDV WLHA+FRAK  GGPGGGVMPPRTSRRRRQNQDG QDPT+ QSE
Subjt:  LVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYYVNILFNVQEGQQVPLEEDDVHWLHAIFRAKLAGGPGGGVMPPRTSRRRRQNQDGMQDPTESQSE

Query:  RGSSTPRG
        RGSSTPRG
Subjt:  RGSSTPRG

A0A5D3DX39 Reverse transcriptase1.3e-3070.37Show/hide
Query:  LVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYYVNILFNVQEGQQVPLEEDDVHWLHAIFRAKLAGGPGGGVMPPRTSRRRRQNQDGMQDPTESQSE
        +VEIELPVPDTLPTSAESS S+SSTW+ELY+E   +V++      G    + EDDV WLHA+FRAK AGGPGGGVMPP TS+RRR NQDGMQ PT+ QSE
Subjt:  LVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYYVNILFNVQEGQQVPLEEDDVHWLHAIFRAKLAGGPGGGVMPPRTSRRRRQNQDGMQDPTESQSE

Query:  RGSSTPRG
        RGSSTPRG
Subjt:  RGSSTPRG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGCTCCAGATCAAGCTCCAGTACGTGGGTGGAGTTGTATATCGAGTCTGTCTATTA
TGTAAATATTTTGTTCAACGTTCAGGAGGGTCAGCAGGTACCGTTAGAGGAAGACGATGTCCATTGGCTTCACGCCATCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAG
GGGGAGTCATGCCACCACGTACCAGCAGACGACGCAGGCAGAATCAGGACGGGATGCAGGATCCTACCGAGAGTCAGTCTGAAAGGGGATCCAGTACCCCGAGAGGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGCTCCAGATCAAGCTCCAGTACGTGGGTGGAGTTGTATATCGAGTCTGTCTATTA
TGTAAATATTTTGTTCAACGTTCAGGAGGGTCAGCAGGTACCGTTAGAGGAAGACGATGTCCATTGGCTTCACGCCATCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAG
GGGGAGTCATGCCACCACGTACCAGCAGACGACGCAGGCAGAATCAGGACGGGATGCAGGATCCTACCGAGAGTCAGTCTGAAAGGGGATCCAGTACCCCGAGAGGTTAG
Protein sequenceShow/hide protein sequence
MLVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYYVNILFNVQEGQQVPLEEDDVHWLHAIFRAKLAGGPGGGVMPPRTSRRRRQNQDGMQDPTESQSERGSSTPRG