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Spg039102 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg039102
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationscaffold13:22012312..22016165
RNA-Seq ExpressionSpg039102
SyntenySpg039102
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0053207.1 hypothetical protein E6C27_scaffold1192G00340 [Cucumis melo var. makuwa]2.1e-1451.89Show/hide
Query:  VYKLNQKLYLVSCRVFENEEFDVYFINFGSVLRKLWVLEVR------------------------------------------VEIELPVPDTLPTSAES
        +YKLNQKLYLVSC VFENEEF VYFINFG VLRKLWVLEVR                                          VEIELP P+ LPTSAES
Subjt:  VYKLNQKLYLVSCRVFENEEFDVYFINFGSVLRKLWVLEVR------------------------------------------VEIELPVPDTLPTSAES

Query:  SRSSSN
        SRS+S+
Subjt:  SRSSSN

KAA0053276.1 uncharacterized protein E6C27_scaffold102G00750 [Cucumis melo var. makuwa]3.8e-1644.59Show/hide
Query:  TKPTTDNHIFQPNFISFLHHFPLKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQTVNLWSFIRFELH--------RRNQEHSGVYKLNQK
        TKPTTD  IFQ NFI FLHHF  KLSE+F+ERVK EEEEEFRGLRLKK+ K   ++   +    T+NLW F+   L         R N+      KL++ 
Subjt:  TKPTTDNHIFQPNFISFLHHFPLKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQTVNLWSFIRFELH--------RRNQEHSGVYKLNQK

Query:  LYLVSCRVFENEEFDVYFINFGSVLRKLWVLEVRVEIELPVPDTLPTSAESSRSSSN
        +      +F+     V   N   ++        +VEIELP+PDTLPT AES  S+S+
Subjt:  LYLVSCRVFENEEFDVYFINFGSVLRKLWVLEVRVEIELPVPDTLPTSAESSRSSSN

TYK01208.1 uncharacterized protein E5676_scaffold2044G00560 [Cucumis melo var. makuwa]4.4e-1247.71Show/hide
Query:  VYKLNQKLYLVSCRVFENEEFDVYFINFGSVLRKLWVLEVR------------------------------------------VEIELPVPDTLPTSAES
        V++ NQ LYLVSCRVF +E+F VYFINFG VLRKLWVLEVR                                          VEIELPVPDT PTSAES
Subjt:  VYKLNQKLYLVSCRVFENEEFDVYFINFGSVLRKLWVLEVR------------------------------------------VEIELPVPDTLPTSAES

Query:  SRSSSNRRG
        S S+S+  G
Subjt:  SRSSSNRRG

TYK04298.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]1.6e-1441.42Show/hide
Query:  EKRKEVEMDSTKPTTDNHIFQPNFISFLHHFPLKLSEHFEERVKEEEEEEFRGLRLKKIGKS---SCKASHCRIWVQTVNLWSFIRFELHRRNQE-----
        E  K++    TKPTT   IFQ NFISFLHHFP KL EHFEERVK EEEEEFR ++ +   +S   S K     ++   +++      E+H+ NQ+     
Subjt:  EKRKEVEMDSTKPTTDNHIFQPNFISFLHHFPLKLSEHFEERVKEEEEEEFRGLRLKKIGKS---SCKASHCRIWVQTVNLWSFIRFELHRRNQE-----

Query:  ---HSGVYKLNQKLYLVSCRVFENEEFDVYFINFGSVLRKLWVLEVRVEIELPVPDTLPTSAESSRSSS
            SG + +  +    S +  E ++  ++ ++  SVLR     +  VEIELPVPD LPTSA+SS S+S
Subjt:  ---HSGVYKLNQKLYLVSCRVFENEEFDVYFINFGSVLRKLWVLEVRVEIELPVPDTLPTSAESSRSSS

TYK08801.1 hypothetical protein E5676_scaffold796G00040 [Cucumis melo var. makuwa]1.8e-1892.59Show/hide
Query:  IFQPNFISFLHHFPLKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIW
        +FQPNFISFLHHFP KLSEHFEERVK EEEEEFRGLRLKKIGKSSCKA+HCRIW
Subjt:  IFQPNFISFLHHFPLKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIW

TrEMBL top hitse value%identityAlignment
A0A5A7UFD2 Uncharacterized protein1.0e-1451.89Show/hide
Query:  VYKLNQKLYLVSCRVFENEEFDVYFINFGSVLRKLWVLEVR------------------------------------------VEIELPVPDTLPTSAES
        +YKLNQKLYLVSC VFENEEF VYFINFG VLRKLWVLEVR                                          VEIELP P+ LPTSAES
Subjt:  VYKLNQKLYLVSCRVFENEEFDVYFINFGSVLRKLWVLEVR------------------------------------------VEIELPVPDTLPTSAES

Query:  SRSSSN
        SRS+S+
Subjt:  SRSSSN

A0A5A7UGD0 Uncharacterized protein1.9e-1644.59Show/hide
Query:  TKPTTDNHIFQPNFISFLHHFPLKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQTVNLWSFIRFELH--------RRNQEHSGVYKLNQK
        TKPTTD  IFQ NFI FLHHF  KLSE+F+ERVK EEEEEFRGLRLKK+ K   ++   +    T+NLW F+   L         R N+      KL++ 
Subjt:  TKPTTDNHIFQPNFISFLHHFPLKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQTVNLWSFIRFELH--------RRNQEHSGVYKLNQK

Query:  LYLVSCRVFENEEFDVYFINFGSVLRKLWVLEVRVEIELPVPDTLPTSAESSRSSSN
        +      +F+     V   N   ++        +VEIELP+PDTLPT AES  S+S+
Subjt:  LYLVSCRVFENEEFDVYFINFGSVLRKLWVLEVRVEIELPVPDTLPTSAESSRSSSN

A0A5D3BQ75 Uncharacterized protein2.1e-1247.71Show/hide
Query:  VYKLNQKLYLVSCRVFENEEFDVYFINFGSVLRKLWVLEVR------------------------------------------VEIELPVPDTLPTSAES
        V++ NQ LYLVSCRVF +E+F VYFINFG VLRKLWVLEVR                                          VEIELPVPDT PTSAES
Subjt:  VYKLNQKLYLVSCRVFENEEFDVYFINFGSVLRKLWVLEVR------------------------------------------VEIELPVPDTLPTSAES

Query:  SRSSSNRRG
        S S+S+  G
Subjt:  SRSSSNRRG

A0A5D3BZ50 Pentatricopeptide repeat-containing protein7.8e-1541.42Show/hide
Query:  EKRKEVEMDSTKPTTDNHIFQPNFISFLHHFPLKLSEHFEERVKEEEEEEFRGLRLKKIGKS---SCKASHCRIWVQTVNLWSFIRFELHRRNQE-----
        E  K++    TKPTT   IFQ NFISFLHHFP KL EHFEERVK EEEEEFR ++ +   +S   S K     ++   +++      E+H+ NQ+     
Subjt:  EKRKEVEMDSTKPTTDNHIFQPNFISFLHHFPLKLSEHFEERVKEEEEEEFRGLRLKKIGKS---SCKASHCRIWVQTVNLWSFIRFELHRRNQE-----

Query:  ---HSGVYKLNQKLYLVSCRVFENEEFDVYFINFGSVLRKLWVLEVRVEIELPVPDTLPTSAESSRSSS
            SG + +  +    S +  E ++  ++ ++  SVLR     +  VEIELPVPD LPTSA+SS S+S
Subjt:  ---HSGVYKLNQKLYLVSCRVFENEEFDVYFINFGSVLRKLWVLEVRVEIELPVPDTLPTSAESSRSSS

A0A5D3CAC6 Uncharacterized protein8.9e-1992.59Show/hide
Query:  IFQPNFISFLHHFPLKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIW
        +FQPNFISFLHHFP KLSEHFEERVK EEEEEFRGLRLKKIGKSSCKA+HCRIW
Subjt:  IFQPNFISFLHHFPLKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIW

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGGAAAAGAAAAAAAAAAAAAAAGAAAAGAGAAAAGAAAGGAAGTGGAAATGGACAGCACAAAGCCCACCACCGACAACCACATTTTTCAGCCCAATTTCATTTC
ATTTCTCCATCATTTTCCATTAAAACTTTCAGAGCACTTTGAGGAGAGAGTGAAGGAAGAAGAAGAAGAAGAATTTCGTGGTTTGAGGTTGAAGAAGATAGGAAAAAGTT
CATGCAAAGCCAGCCATTGCAGAATCTGGGTGCAAACTGTCAACCTCTGGTCTTTTATTCGGTTTGAGCTACACAGAAGGAATCAAGAGCATTCTGGGGTGTACAAGTTG
AATCAGAAGCTCTATTTGGTAAGTTGTAGAGTGTTCGAAAATGAAGAGTTTGATGTGTATTTCATTAATTTTGGTTCAGTATTGAGGAAGTTATGGGTATTGGAAGTTAG
GGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAATCGCAGAGGACGGCCCCAACAATGCCACCGTAGGGAAGAGC
TAATGTTGGGAATAGCCCTAGGAAACCCTATCCATTTCTGGAGTTTGCATTGTTCTGAATCCCATGCGCAAGCCCTCTGTAGGGTGATCGCTCACAGGGCGACTCGCAGG
CAGCGCATAGGAATCTCACGGTGCAACCTAATGATGGAGACCGCAGGATACGTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAAGGAAAAGAAAAAAAAAAAAAAAGAAAAGAGAAAAGAAAGGAAGTGGAAATGGACAGCACAAAGCCCACCACCGACAACCACATTTTTCAGCCCAATTTCATTTC
ATTTCTCCATCATTTTCCATTAAAACTTTCAGAGCACTTTGAGGAGAGAGTGAAGGAAGAAGAAGAAGAAGAATTTCGTGGTTTGAGGTTGAAGAAGATAGGAAAAAGTT
CATGCAAAGCCAGCCATTGCAGAATCTGGGTGCAAACTGTCAACCTCTGGTCTTTTATTCGGTTTGAGCTACACAGAAGGAATCAAGAGCATTCTGGGGTGTACAAGTTG
AATCAGAAGCTCTATTTGGTAAGTTGTAGAGTGTTCGAAAATGAAGAGTTTGATGTGTATTTCATTAATTTTGGTTCAGTATTGAGGAAGTTATGGGTATTGGAAGTTAG
GGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAATCGCAGAGGACGGCCCCAACAATGCCACCGTAGGGAAGAGC
TAATGTTGGGAATAGCCCTAGGAAACCCTATCCATTTCTGGAGTTTGCATTGTTCTGAATCCCATGCGCAAGCCCTCTGTAGGGTGATCGCTCACAGGGCGACTCGCAGG
CAGCGCATAGGAATCTCACGGTGCAACCTAATGATGGAGACCGCAGGATACGTTTGA
Protein sequenceShow/hide protein sequence
MEGKEKKKKRKEKRKEVEMDSTKPTTDNHIFQPNFISFLHHFPLKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQTVNLWSFIRFELHRRNQEHSGVYKL
NQKLYLVSCRVFENEEFDVYFINFGSVLRKLWVLEVRVEIELPVPDTLPTSAESSRSSSNRRGRPQQCHRREELMLGIALGNPIHFWSLHCSESHAQALCRVIAHRATRR
QRIGISRCNLMMETAGYV