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Spg039104 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg039104
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold13:22501758..22505670
RNA-Seq ExpressionSpg039104
SyntenySpg039104
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]1.8e-2550.88Show/hide
Query:  PRGNRSSLQTRKLAKTPEAIWYRVHTSYIPLLTLSVLCDNDAVVSAGRPHYDKDDGSAGRAPLHRRTSKRWLYWACPT----QHISIMLVEIELPVPDTL
        PRGNR SLQT ++ K          T   PL TLSVL DNDAVV            SAG+APL +R   RW     PT    +  S  LVEIELPVPD L
Subjt:  PRGNRSSLQTRKLAKTPEAIWYRVHTSYIPLLTLSVLCDNDAVVSAGRPHYDKDDGSAGRAPLHRRTSKRWLYWACPT----QHISIMLVEIELPVPDTL

Query:  PTSAESSRTSSSTWVELYIESVHIVNVFVQEGQQVS------------LEEDDVRWLHAIFRAKLAGGPGG
        PTSAESSR++SSTW+ELY ESVH V +F +   Q              +  DDV WLHAIFRAK AGGPGG
Subjt:  PTSAESSRTSSSTWVELYIESVHIVNVFVQEGQQVS------------LEEDDVRWLHAIFRAKLAGGPGG

KAA0065516.1 uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa]3.2e-3557.58Show/hide
Query:  PRGNRSSLQTRKLAKTPEAIWYRVHTSYIPLLTLSVLCDNDAVVSAGRPHYDKDDGSAGRAPLHRRTSKRWLYWACPTQHISIML----------VEIEL
        PRGNRSSLQT +L KT              L TLSVL DNDAVVSAG PHYDKDDG+A RAPLHRRTSKRWLYWACPT   S+ML          VEIEL
Subjt:  PRGNRSSLQTRKLAKTPEAIWYRVHTSYIPLLTLSVLCDNDAVVSAGRPHYDKDDGSAGRAPLHRRTSKRWLYWACPTQHISIML----------VEIEL

Query:  PVPDTLPTSAESSRTSSSTWVELYIESVHIVNVFVQEGQQVSLEEDDVRWLHAIFRAKLAGGPGG
         VPDTLPTSAESS ++S         S  IV              DDV WLH +FRAK  GGPGG
Subjt:  PVPDTLPTSAESSRTSSSTWVELYIESVHIVNVFVQEGQQVSLEEDDVRWLHAIFRAKLAGGPGG

TYJ98800.1 uncharacterized protein E5676_scaffold1625G00140 [Cucumis melo var. makuwa]3.2e-3557.58Show/hide
Query:  PRGNRSSLQTRKLAKTPEAIWYRVHTSYIPLLTLSVLCDNDAVVSAGRPHYDKDDGSAGRAPLHRRTSKRWLYWACPTQHISIML----------VEIEL
        PRGNRSSLQT +L KT              L TLSVL DNDAVVSAG PHYDKDDG+A RAPLHRRTSKRWLYWACPT   S+ML          VEIEL
Subjt:  PRGNRSSLQTRKLAKTPEAIWYRVHTSYIPLLTLSVLCDNDAVVSAGRPHYDKDDGSAGRAPLHRRTSKRWLYWACPTQHISIML----------VEIEL

Query:  PVPDTLPTSAESSRTSSSTWVELYIESVHIVNVFVQEGQQVSLEEDDVRWLHAIFRAKLAGGPGG
         VPDTLPTSAESS ++S         S  IV              DDV WLH +FRAK  GGPGG
Subjt:  PVPDTLPTSAESSRTSSSTWVELYIESVHIVNVFVQEGQQVSLEEDDVRWLHAIFRAKLAGGPGG

TYK03091.1 reverse transcriptase [Cucumis melo var. makuwa]1.8e-2550.88Show/hide
Query:  PRGNRSSLQTRKLAKTPEAIWYRVHTSYIPLLTLSVLCDNDAVVSAGRPHYDKDDGSAGRAPLHRRTSKRWLYWACPT----QHISIMLVEIELPVPDTL
        PRGNR SLQT ++ K          T   PL TLSVL DNDAVV            SAG+APL +R   RW     PT    +  S  LVEIELPVPD L
Subjt:  PRGNRSSLQTRKLAKTPEAIWYRVHTSYIPLLTLSVLCDNDAVVSAGRPHYDKDDGSAGRAPLHRRTSKRWLYWACPT----QHISIMLVEIELPVPDTL

Query:  PTSAESSRTSSSTWVELYIESVHIVNVFVQEGQQVS------------LEEDDVRWLHAIFRAKLAGGPGG
        PTSAESSR++SSTW+ELY ESVH V +F +   Q              +  DDV WLHAIFRAK AGGPGG
Subjt:  PTSAESSRTSSSTWVELYIESVHIVNVFVQEGQQVS------------LEEDDVRWLHAIFRAKLAGGPGG

TYK08801.1 hypothetical protein E5676_scaffold796G00040 [Cucumis melo var. makuwa]1.2e-2145.4Show/hide
Query:  PRGNRSSLQTRKLAKTPEAIWYRVHTSYI------------PLLTLSVLCDNDAVVSAGRPHYDKDDGSAGRAPLHRRTSKRWLYWACPTQHISIMLVEI
        PRGNRSSLQT +L K   +I Y      +            PL TLSVL DNDAVVS G+ HYDKDDG  G    H       +       H     +EI
Subjt:  PRGNRSSLQTRKLAKTPEAIWYRVHTSYI------------PLLTLSVLCDNDAVVSAGRPHYDKDDGSAGRAPLHRRTSKRWLYWACPTQHISIMLVEI

Query:  ELPVPDTLPTSAESSRTSSSTWVELYIE------SVHIVNVFVQEGQQVSL-EEDDVRWLHAIFRAKLAGGPGG
        EL VPDTLPTSAESS ++SSTW+E   E       V   +    E +   +  E+DV WLHA+FRAK+AGG GG
Subjt:  ELPVPDTLPTSAESSRTSSSTWVELYIE------SVHIVNVFVQEGQQVSL-EEDDVRWLHAIFRAKLAGGPGG

TrEMBL top hitse value%identityAlignment
A0A5A7T7M6 Reverse transcriptase8.6e-2650.88Show/hide
Query:  PRGNRSSLQTRKLAKTPEAIWYRVHTSYIPLLTLSVLCDNDAVVSAGRPHYDKDDGSAGRAPLHRRTSKRWLYWACPT----QHISIMLVEIELPVPDTL
        PRGNR SLQT ++ K          T   PL TLSVL DNDAVV            SAG+APL +R   RW     PT    +  S  LVEIELPVPD L
Subjt:  PRGNRSSLQTRKLAKTPEAIWYRVHTSYIPLLTLSVLCDNDAVVSAGRPHYDKDDGSAGRAPLHRRTSKRWLYWACPT----QHISIMLVEIELPVPDTL

Query:  PTSAESSRTSSSTWVELYIESVHIVNVFVQEGQQVS------------LEEDDVRWLHAIFRAKLAGGPGG
        PTSAESSR++SSTW+ELY ESVH V +F +   Q              +  DDV WLHAIFRAK AGGPGG
Subjt:  PTSAESSRTSSSTWVELYIESVHIVNVFVQEGQQVS------------LEEDDVRWLHAIFRAKLAGGPGG

A0A5A7VGQ5 Uncharacterized protein1.6e-3557.58Show/hide
Query:  PRGNRSSLQTRKLAKTPEAIWYRVHTSYIPLLTLSVLCDNDAVVSAGRPHYDKDDGSAGRAPLHRRTSKRWLYWACPTQHISIML----------VEIEL
        PRGNRSSLQT +L KT              L TLSVL DNDAVVSAG PHYDKDDG+A RAPLHRRTSKRWLYWACPT   S+ML          VEIEL
Subjt:  PRGNRSSLQTRKLAKTPEAIWYRVHTSYIPLLTLSVLCDNDAVVSAGRPHYDKDDGSAGRAPLHRRTSKRWLYWACPTQHISIML----------VEIEL

Query:  PVPDTLPTSAESSRTSSSTWVELYIESVHIVNVFVQEGQQVSLEEDDVRWLHAIFRAKLAGGPGG
         VPDTLPTSAESS ++S         S  IV              DDV WLH +FRAK  GGPGG
Subjt:  PVPDTLPTSAESSRTSSSTWVELYIESVHIVNVFVQEGQQVSLEEDDVRWLHAIFRAKLAGGPGG

A0A5D3BG85 Uncharacterized protein1.6e-3557.58Show/hide
Query:  PRGNRSSLQTRKLAKTPEAIWYRVHTSYIPLLTLSVLCDNDAVVSAGRPHYDKDDGSAGRAPLHRRTSKRWLYWACPTQHISIML----------VEIEL
        PRGNRSSLQT +L KT              L TLSVL DNDAVVSAG PHYDKDDG+A RAPLHRRTSKRWLYWACPT   S+ML          VEIEL
Subjt:  PRGNRSSLQTRKLAKTPEAIWYRVHTSYIPLLTLSVLCDNDAVVSAGRPHYDKDDGSAGRAPLHRRTSKRWLYWACPTQHISIML----------VEIEL

Query:  PVPDTLPTSAESSRTSSSTWVELYIESVHIVNVFVQEGQQVSLEEDDVRWLHAIFRAKLAGGPGG
         VPDTLPTSAESS ++S         S  IV              DDV WLH +FRAK  GGPGG
Subjt:  PVPDTLPTSAESSRTSSSTWVELYIESVHIVNVFVQEGQQVSLEEDDVRWLHAIFRAKLAGGPGG

A0A5D3BTP3 Reverse transcriptase8.6e-2650.88Show/hide
Query:  PRGNRSSLQTRKLAKTPEAIWYRVHTSYIPLLTLSVLCDNDAVVSAGRPHYDKDDGSAGRAPLHRRTSKRWLYWACPT----QHISIMLVEIELPVPDTL
        PRGNR SLQT ++ K          T   PL TLSVL DNDAVV            SAG+APL +R   RW     PT    +  S  LVEIELPVPD L
Subjt:  PRGNRSSLQTRKLAKTPEAIWYRVHTSYIPLLTLSVLCDNDAVVSAGRPHYDKDDGSAGRAPLHRRTSKRWLYWACPT----QHISIMLVEIELPVPDTL

Query:  PTSAESSRTSSSTWVELYIESVHIVNVFVQEGQQVS------------LEEDDVRWLHAIFRAKLAGGPGG
        PTSAESSR++SSTW+ELY ESVH V +F +   Q              +  DDV WLHAIFRAK AGGPGG
Subjt:  PTSAESSRTSSSTWVELYIESVHIVNVFVQEGQQVS------------LEEDDVRWLHAIFRAKLAGGPGG

A0A5D3CAC6 Uncharacterized protein5.8e-2245.4Show/hide
Query:  PRGNRSSLQTRKLAKTPEAIWYRVHTSYI------------PLLTLSVLCDNDAVVSAGRPHYDKDDGSAGRAPLHRRTSKRWLYWACPTQHISIMLVEI
        PRGNRSSLQT +L K   +I Y      +            PL TLSVL DNDAVVS G+ HYDKDDG  G    H       +       H     +EI
Subjt:  PRGNRSSLQTRKLAKTPEAIWYRVHTSYI------------PLLTLSVLCDNDAVVSAGRPHYDKDDGSAGRAPLHRRTSKRWLYWACPTQHISIMLVEI

Query:  ELPVPDTLPTSAESSRTSSSTWVELYIE------SVHIVNVFVQEGQQVSL-EEDDVRWLHAIFRAKLAGGPGG
        EL VPDTLPTSAESS ++SSTW+E   E       V   +    E +   +  E+DV WLHA+FRAK+AGG GG
Subjt:  ELPVPDTLPTSAESSRTSSSTWVELYIE------SVHIVNVFVQEGQQVSL-EEDDVRWLHAIFRAKLAGGPGG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGTGCGGTGCGAAGACATGTTTCAGGCGGTTCAAGGTAGCTAGCGGTCTGGTTCGCATGGTCTATCTGGGCTGGGACCGATTTGGTCCGGTTCAGCTGGAATTTGG
CTCGATTCGGAACTCTCCCGATGAAGTTCTGTCTAAGGTTGGAGGAAAAGCTCATGCAAAGCCAGCTACAGCAGAATCTGGGTTCAACCTATCAACCTCTGGTTTTTTAT
TCGGTTTGAGCTACACAGAAGGAACTAAGAGGAGAAAGATAAAGGGTAGCAGAGAAGCTCAAATCTGTGTTGTCTGTGTTCGGGGCGTTTCTGGGAACATTGGTTGGGAA
TCTCGTTTTCATTTCTTCAGGCCAAGAGGAAATAGGTCGAGTCTACAGACCAGAAAACTAGCTAAGACTCCCGAGGCTATATGGTACCGTGTGCACACAAGTTATATTCC
GTTGCTGACGTTGAGTGTACTCTGTGACAACGATGCTGTCGTGAGTGCTGGGCGGCCCCACTACGACAAAGACGATGGGAGTGCTGGGCGGGCCCCACTACATCGTAGGA
CTAGTAAACGTTGGTTGTACTGGGCGTGCCCTACACAACATATATCGATCATGTTAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCC
AGAACAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTCGTTCAGGAGGGTCAGCAGGTATCGTTAGAGGAGGACGATGTCCGTTG
GCTTCACGCCATCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGG
mRNA sequenceShow/hide mRNA sequence
ATGATGTGCGGTGCGAAGACATGTTTCAGGCGGTTCAAGGTAGCTAGCGGTCTGGTTCGCATGGTCTATCTGGGCTGGGACCGATTTGGTCCGGTTCAGCTGGAATTTGG
CTCGATTCGGAACTCTCCCGATGAAGTTCTGTCTAAGGTTGGAGGAAAAGCTCATGCAAAGCCAGCTACAGCAGAATCTGGGTTCAACCTATCAACCTCTGGTTTTTTAT
TCGGTTTGAGCTACACAGAAGGAACTAAGAGGAGAAAGATAAAGGGTAGCAGAGAAGCTCAAATCTGTGTTGTCTGTGTTCGGGGCGTTTCTGGGAACATTGGTTGGGAA
TCTCGTTTTCATTTCTTCAGGCCAAGAGGAAATAGGTCGAGTCTACAGACCAGAAAACTAGCTAAGACTCCCGAGGCTATATGGTACCGTGTGCACACAAGTTATATTCC
GTTGCTGACGTTGAGTGTACTCTGTGACAACGATGCTGTCGTGAGTGCTGGGCGGCCCCACTACGACAAAGACGATGGGAGTGCTGGGCGGGCCCCACTACATCGTAGGA
CTAGTAAACGTTGGTTGTACTGGGCGTGCCCTACACAACATATATCGATCATGTTAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCC
AGAACAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTCGTTCAGGAGGGTCAGCAGGTATCGTTAGAGGAGGACGATGTCCGTTG
GCTTCACGCCATCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGG
Protein sequenceShow/hide protein sequence
MMCGAKTCFRRFKVASGLVRMVYLGWDRFGPVQLEFGSIRNSPDEVLSKVGGKAHAKPATAESGFNLSTSGFLFGLSYTEGTKRRKIKGSREAQICVVCVRGVSGNIGWE
SRFHFFRPRGNRSSLQTRKLAKTPEAIWYRVHTSYIPLLTLSVLCDNDAVVSAGRPHYDKDDGSAGRAPLHRRTSKRWLYWACPTQHISIMLVEIELPVPDTLPTSAESS
RTSSSTWVELYIESVHIVNVFVQEGQQVSLEEDDVRWLHAIFRAKLAGGPGG