; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg039119 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg039119
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon gag protein
Genome locationscaffold13:22963125..22971656
RNA-Seq ExpressionSpg039119
SyntenySpg039119
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036008.1 Retrotransposon gag protein [Cucumis melo var. makuwa]5.6e-3164.8Show/hide
Query:  KEVDNSKKGEQRTSVFDRIKPPTTGHSVFQRMSMTTTEEENQCLVSTFTRPSAFQRLSVSTSKKSRSSTSVFDCLKVTNDQPKRKMDKLELKLFDEVNSN
        +EVDNS + +QRTSVFDRIKP TT   VFQR+SM T EEENQC +ST+ R SAF+RLS+STSKK R STS FD LK+TNDQ +R+M   + K F E N +
Subjt:  KEVDNSKKGEQRTSVFDRIKPPTTGHSVFQRMSMTTTEEENQCLVSTFTRPSAFQRLSVSTSKKSRSSTSVFDCLKVTNDQPKRKMDKLELKLFDEVNSN

Query:  EKLHSNIPSRMKRKFSVLINTECSL
        +K+HS +PSRMKRK SV INTE SL
Subjt:  EKLHSNIPSRMKRKFSVLINTECSL

KAA0044978.1 retrotransposon gag protein [Cucumis melo var. makuwa]6.6e-3260Show/hide
Query:  HINTLMKAIEEKDSQIEHLRKEVDNSKKGEQRTSVFDRIKPPTTGHSVFQRMSMTTTEEENQCLVSTFTRPSAFQRLSVSTSKKSRSSTSVFDCLKVTND
        H  +++K     DS      +EVDNS + +QRTSVFDRIKP TT  SVFQR+SM T EEENQC  ST+ R SAF+RLS+STSKK R STS FD LK+TND
Subjt:  HINTLMKAIEEKDSQIEHLRKEVDNSKKGEQRTSVFDRIKPPTTGHSVFQRMSMTTTEEENQCLVSTFTRPSAFQRLSVSTSKKSRSSTSVFDCLKVTND

Query:  QPKRKMDKLELKLFDEVNSNEKLHSNIPSRMKRKFSVLINTECSL
        Q +R+M  L+ K F E N ++K+HS +PSRMKRK SV INTE SL
Subjt:  QPKRKMDKLELKLFDEVNSNEKLHSNIPSRMKRKFSVLINTECSL

KAA0059024.1 retrotransposon gag protein [Cucumis melo var. makuwa]9.5e-3164.8Show/hide
Query:  KEVDNSKKGEQRTSVFDRIKPPTTGHSVFQRMSMTTTEEENQCLVSTFTRPSAFQRLSVSTSKKSRSSTSVFDCLKVTNDQPKRKMDKLELKLFDEVNSN
        KEV+NS K  QRTS+FDRIKP TT  SVFQR+SM T EEENQC    +TR S F+RLS+STSKK R STS FD LK+TNDQ +R+M  L+ K F E N  
Subjt:  KEVDNSKKGEQRTSVFDRIKPPTTGHSVFQRMSMTTTEEENQCLVSTFTRPSAFQRLSVSTSKKSRSSTSVFDCLKVTNDQPKRKMDKLELKLFDEVNSN

Query:  EKLHSNIPSRMKRKFSVLINTECSL
        +K+HS +PSRMKRK SV INTE SL
Subjt:  EKLHSNIPSRMKRKFSVLINTECSL

KAA0061611.1 retrotransposon gag protein [Cucumis melo var. makuwa]5.6e-3163.85Show/hide
Query:  KEVDNSKKGEQRTSVFDRIKPPTTGHSVFQRMSMTTTEEENQCLVSTFTRPSAFQRLSVSTSKKSRSSTSVFDCLKVTNDQPKRKMDKLELKLFDEVNSN
        KEV+NS +  QRTSVFDRIKP TT  SVFQR+SMTT EEENQC    +TR S F+RLS+STSKK R STSVFD LK+T+DQ +R+M  L+ K F E N +
Subjt:  KEVDNSKKGEQRTSVFDRIKPPTTGHSVFQRMSMTTTEEENQCLVSTFTRPSAFQRLSVSTSKKSRSSTSVFDCLKVTNDQPKRKMDKLELKLFDEVNSN

Query:  EKLHSNIPSRMKRKFSVLINTECSLKFLLQ
        +K+HS +PSRMKRK SV INTE ++  LLQ
Subjt:  EKLHSNIPSRMKRKFSVLINTECSLKFLLQ

KAA0063719.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]5.6e-3157.42Show/hide
Query:  MEERMAEMQEHINTLMKAIEEKDSQIEHLRKEVDNSKKGEQRTSVFDRIKPPTTGHSVFQRMSMTTTEEENQCLVSTFTRPSAFQRLSVSTSKKSRSSTS
        +E+   E+ E       +I E D+  +   KEVDNS + +QRTSVFDRIKP TT  SVFQR+SM T EEENQC  ST+ R S F+RLS+STSKK R STS
Subjt:  MEERMAEMQEHINTLMKAIEEKDSQIEHLRKEVDNSKKGEQRTSVFDRIKPPTTGHSVFQRMSMTTTEEENQCLVSTFTRPSAFQRLSVSTSKKSRSSTS

Query:  VFDCLKVTNDQPKRKMDKLELKLFDEVNSNEKLHSNIPSRMKRKFSVLINTECSL
         FD LK+TNDQ +R+M  L+ K F E N ++K+HS +PSRMKRK SV INTE SL
Subjt:  VFDCLKVTNDQPKRKMDKLELKLFDEVNSNEKLHSNIPSRMKRKFSVLINTECSL

TrEMBL top hitse value%identityAlignment
A0A5A7SZJ7 Retrotransposon gag protein2.7e-3164.8Show/hide
Query:  KEVDNSKKGEQRTSVFDRIKPPTTGHSVFQRMSMTTTEEENQCLVSTFTRPSAFQRLSVSTSKKSRSSTSVFDCLKVTNDQPKRKMDKLELKLFDEVNSN
        +EVDNS + +QRTSVFDRIKP TT   VFQR+SM T EEENQC +ST+ R SAF+RLS+STSKK R STS FD LK+TNDQ +R+M   + K F E N +
Subjt:  KEVDNSKKGEQRTSVFDRIKPPTTGHSVFQRMSMTTTEEENQCLVSTFTRPSAFQRLSVSTSKKSRSSTSVFDCLKVTNDQPKRKMDKLELKLFDEVNSN

Query:  EKLHSNIPSRMKRKFSVLINTECSL
        +K+HS +PSRMKRK SV INTE SL
Subjt:  EKLHSNIPSRMKRKFSVLINTECSL

A0A5A7TQ06 Retrotransposon gag protein3.2e-3260Show/hide
Query:  HINTLMKAIEEKDSQIEHLRKEVDNSKKGEQRTSVFDRIKPPTTGHSVFQRMSMTTTEEENQCLVSTFTRPSAFQRLSVSTSKKSRSSTSVFDCLKVTND
        H  +++K     DS      +EVDNS + +QRTSVFDRIKP TT  SVFQR+SM T EEENQC  ST+ R SAF+RLS+STSKK R STS FD LK+TND
Subjt:  HINTLMKAIEEKDSQIEHLRKEVDNSKKGEQRTSVFDRIKPPTTGHSVFQRMSMTTTEEENQCLVSTFTRPSAFQRLSVSTSKKSRSSTSVFDCLKVTND

Query:  QPKRKMDKLELKLFDEVNSNEKLHSNIPSRMKRKFSVLINTECSL
        Q +R+M  L+ K F E N ++K+HS +PSRMKRK SV INTE SL
Subjt:  QPKRKMDKLELKLFDEVNSNEKLHSNIPSRMKRKFSVLINTECSL

A0A5A7UV73 Retrotransposon gag protein4.6e-3164.8Show/hide
Query:  KEVDNSKKGEQRTSVFDRIKPPTTGHSVFQRMSMTTTEEENQCLVSTFTRPSAFQRLSVSTSKKSRSSTSVFDCLKVTNDQPKRKMDKLELKLFDEVNSN
        KEV+NS K  QRTS+FDRIKP TT  SVFQR+SM T EEENQC    +TR S F+RLS+STSKK R STS FD LK+TNDQ +R+M  L+ K F E N  
Subjt:  KEVDNSKKGEQRTSVFDRIKPPTTGHSVFQRMSMTTTEEENQCLVSTFTRPSAFQRLSVSTSKKSRSSTSVFDCLKVTNDQPKRKMDKLELKLFDEVNSN

Query:  EKLHSNIPSRMKRKFSVLINTECSL
        +K+HS +PSRMKRK SV INTE SL
Subjt:  EKLHSNIPSRMKRKFSVLINTECSL

A0A5A7V7A0 Retrotransposon gag protein2.7e-3163.85Show/hide
Query:  KEVDNSKKGEQRTSVFDRIKPPTTGHSVFQRMSMTTTEEENQCLVSTFTRPSAFQRLSVSTSKKSRSSTSVFDCLKVTNDQPKRKMDKLELKLFDEVNSN
        KEV+NS +  QRTSVFDRIKP TT  SVFQR+SMTT EEENQC    +TR S F+RLS+STSKK R STSVFD LK+T+DQ +R+M  L+ K F E N +
Subjt:  KEVDNSKKGEQRTSVFDRIKPPTTGHSVFQRMSMTTTEEENQCLVSTFTRPSAFQRLSVSTSKKSRSSTSVFDCLKVTNDQPKRKMDKLELKLFDEVNSN

Query:  EKLHSNIPSRMKRKFSVLINTECSLKFLLQ
        +K+HS +PSRMKRK SV INTE ++  LLQ
Subjt:  EKLHSNIPSRMKRKFSVLINTECSLKFLLQ

A0A5A7VDY3 Ty3-gypsy retrotransposon protein2.7e-3157.42Show/hide
Query:  MEERMAEMQEHINTLMKAIEEKDSQIEHLRKEVDNSKKGEQRTSVFDRIKPPTTGHSVFQRMSMTTTEEENQCLVSTFTRPSAFQRLSVSTSKKSRSSTS
        +E+   E+ E       +I E D+  +   KEVDNS + +QRTSVFDRIKP TT  SVFQR+SM T EEENQC  ST+ R S F+RLS+STSKK R STS
Subjt:  MEERMAEMQEHINTLMKAIEEKDSQIEHLRKEVDNSKKGEQRTSVFDRIKPPTTGHSVFQRMSMTTTEEENQCLVSTFTRPSAFQRLSVSTSKKSRSSTS

Query:  VFDCLKVTNDQPKRKMDKLELKLFDEVNSNEKLHSNIPSRMKRKFSVLINTECSL
         FD LK+TNDQ +R+M  L+ K F E N ++K+HS +PSRMKRK SV INTE SL
Subjt:  VFDCLKVTNDQPKRKMDKLELKLFDEVNSNEKLHSNIPSRMKRKFSVLINTECSL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTCAAGGAGGAAGCCCAAGATTTGTCATGATAAGCATTGGGCCAAGAAGGATTGAAGAAAACCCAAGACTCAGCCCAATCCGCGCTCAAGATGGTTCTGGAATCGT
CGCAGCGTCGCGACGCTTGGAGGACAGCGTCGCCTCGCTGTCCCATTTCTTGCCGAGCAAGTCGAGTGACGTCACAGCGTCGCAACGCTGTGCCGATAGCGTCGCGACGC
TGTCCCATTTTCGGGCCTATAAAAGGTTTTTAGGTTATATCTTGAACACCGATCCTCATATTTCTCCACATACAGTTCAAGACTCATACAACAACCTACGATGGCATAAA
ACCCAAGAAGATGGTCTCAAACATGATCATTTGAAATTCCAAAGGAGAGACGTTAGTGGCTGTAAAAAAGTTCAGGAGAACATGTTGCTCAGTGGAATGAGCAGTAGCTC
AAGCATCAGTAGATGGGGCCAAATTAGCGTTGGAATCGAGAATAAGATTCGCTTTAATGGGGCTGATATGCCGTGTGGGTTGGTGGAATGGGTGAATGAGTATGTGACGG
TTTTTCATGAGGCTGGGAGGAGGGCTAGGGAAGGAGAGCATGAGGATGTTAGTCGGGAGAGGGTTCAGAAAGAAAGGAAGAAGAGAAAGCTCTTAGAAGAAACCGAGGAT
GAAGCTCCTTCTGCAGAATTGAAGATCAAAGCTCAGATCCTCATCAAACCCAGCTGCAGAACTGAAGAACGAACTGCAGAACTGAAGAATGAAGCTCAGATCCTCTTCAA
ATCCTGCTGCAGAATCGAAGATCAAAGCTCAGATCCTCGTCAAATTCAGCTAATTATGGAAGAAAGAATGGCTGAGATGCAGGAGCACATCAACACCTTGATGAAGGCGA
TTGAAGAAAAGGATTCTCAAATTGAGCACCTAAGGAAAGAAGTTGACAATTCCAAGAAGGGTGAACAAAGGACTTCCGTCTTCGATCGCATCAAGCCTCCAACTACTGGT
CATTCGGTATTCCAAAGAATGAGTATGACCACGACAGAAGAAGAAAATCAATGTTTGGTGTCCACCTTCACTCGACCTTCAGCTTTCCAAAGACTAAGTGTCTCCACGTC
GAAGAAAAGTCGATCTTCAACATCTGTCTTTGATTGCCTCAAAGTAACAAACGATCAACCTAAAAGAAAGATGGACAAATTAGAGTTGAAACTTTTCGATGAAGTAAACA
GCAACGAGAAGCTTCATAGTAACATCCCGTCACGTATGAAGAGGAAGTTTTCTGTTCTCATAAATACGGAATGTTCCTTGAAGTTCCTTCTCCAAGTTCGAAGGTTTCTC
CTGCGCTACGCTGCAGTTCCTTCTCCAAGTTCGAAGGTTGCGCTTCGCTGCAGTTCCTTCTCTCCAAGTTCGAAGGTTGTGCTTCGCTGCAGTTCCTTCTCCAAGTTCGA
AGGTTTCTCCTGCGCTTCGCTGCAGTTTCTCTCCAAGCAGAAGGTTCTCCTGCGCTTCGCCGCAGTTCCTTCTTCAAGTTTGAAGGTTCTCTCATGCTTTGCTACAGTTC
CTTCTCTCCAAGTTCGAGGGTTCTTCTACGCTTTGCTGCAGTTTCTTCTCTCCAAGTTTGAAGGTTCTCCTGCGCTTCGATCTTCGTTGTTCCTTCTCCAAGTTCGAAGG
ATCACAAAGTTCGAAGGTTCGATCACAAAGTTCGAAGGTTCTCCTGCGCTTCGCTGCAGTTACTTCTCTTCAAGTTCGAAGGTTTCTCCTGCGCTTCACTGCAGTTTCTT
CTCTCCAAATTCGAAGGTTCTTCCGCGCTTCGCTGCAGTTCCTTCTCTCCAAGTTCGAAGGTTCTCCTGCGCTTCGCTGCAGTTTTTTCTGTTCAAATTCGAAGGTTTCT
CCTGCGCTTTGCTGCAGTTCCTTCTCTCCAAATTCGAAGGTTCTTCCGCGCTTCGCTGCAGTTCCTTCTCTCCAAGTTTGAAGGTTCTCCTACGCTTCGCTGCAGTTTCT
TCTCTTGAAGTTCGAAGGTTCTCCTACGTTTCGCTGCAGTTCCTTCCTCAAAGATCAAAGGCTCTCCACCGCTGTCGTTTCTCCCTCAAATTTAAAGGTCCTTCATTGTC
GTCGTTTCTTCCACAAGTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGTCAAGGAGGAAGCCCAAGATTTGTCATGATAAGCATTGGGCCAAGAAGGATTGAAGAAAACCCAAGACTCAGCCCAATCCGCGCTCAAGATGGTTCTGGAATCGT
CGCAGCGTCGCGACGCTTGGAGGACAGCGTCGCCTCGCTGTCCCATTTCTTGCCGAGCAAGTCGAGTGACGTCACAGCGTCGCAACGCTGTGCCGATAGCGTCGCGACGC
TGTCCCATTTTCGGGCCTATAAAAGGTTTTTAGGTTATATCTTGAACACCGATCCTCATATTTCTCCACATACAGTTCAAGACTCATACAACAACCTACGATGGCATAAA
ACCCAAGAAGATGGTCTCAAACATGATCATTTGAAATTCCAAAGGAGAGACGTTAGTGGCTGTAAAAAAGTTCAGGAGAACATGTTGCTCAGTGGAATGAGCAGTAGCTC
AAGCATCAGTAGATGGGGCCAAATTAGCGTTGGAATCGAGAATAAGATTCGCTTTAATGGGGCTGATATGCCGTGTGGGTTGGTGGAATGGGTGAATGAGTATGTGACGG
TTTTTCATGAGGCTGGGAGGAGGGCTAGGGAAGGAGAGCATGAGGATGTTAGTCGGGAGAGGGTTCAGAAAGAAAGGAAGAAGAGAAAGCTCTTAGAAGAAACCGAGGAT
GAAGCTCCTTCTGCAGAATTGAAGATCAAAGCTCAGATCCTCATCAAACCCAGCTGCAGAACTGAAGAACGAACTGCAGAACTGAAGAATGAAGCTCAGATCCTCTTCAA
ATCCTGCTGCAGAATCGAAGATCAAAGCTCAGATCCTCGTCAAATTCAGCTAATTATGGAAGAAAGAATGGCTGAGATGCAGGAGCACATCAACACCTTGATGAAGGCGA
TTGAAGAAAAGGATTCTCAAATTGAGCACCTAAGGAAAGAAGTTGACAATTCCAAGAAGGGTGAACAAAGGACTTCCGTCTTCGATCGCATCAAGCCTCCAACTACTGGT
CATTCGGTATTCCAAAGAATGAGTATGACCACGACAGAAGAAGAAAATCAATGTTTGGTGTCCACCTTCACTCGACCTTCAGCTTTCCAAAGACTAAGTGTCTCCACGTC
GAAGAAAAGTCGATCTTCAACATCTGTCTTTGATTGCCTCAAAGTAACAAACGATCAACCTAAAAGAAAGATGGACAAATTAGAGTTGAAACTTTTCGATGAAGTAAACA
GCAACGAGAAGCTTCATAGTAACATCCCGTCACGTATGAAGAGGAAGTTTTCTGTTCTCATAAATACGGAATGTTCCTTGAAGTTCCTTCTCCAAGTTCGAAGGTTTCTC
CTGCGCTACGCTGCAGTTCCTTCTCCAAGTTCGAAGGTTGCGCTTCGCTGCAGTTCCTTCTCTCCAAGTTCGAAGGTTGTGCTTCGCTGCAGTTCCTTCTCCAAGTTCGA
AGGTTTCTCCTGCGCTTCGCTGCAGTTTCTCTCCAAGCAGAAGGTTCTCCTGCGCTTCGCCGCAGTTCCTTCTTCAAGTTTGAAGGTTCTCTCATGCTTTGCTACAGTTC
CTTCTCTCCAAGTTCGAGGGTTCTTCTACGCTTTGCTGCAGTTTCTTCTCTCCAAGTTTGAAGGTTCTCCTGCGCTTCGATCTTCGTTGTTCCTTCTCCAAGTTCGAAGG
ATCACAAAGTTCGAAGGTTCGATCACAAAGTTCGAAGGTTCTCCTGCGCTTCGCTGCAGTTACTTCTCTTCAAGTTCGAAGGTTTCTCCTGCGCTTCACTGCAGTTTCTT
CTCTCCAAATTCGAAGGTTCTTCCGCGCTTCGCTGCAGTTCCTTCTCTCCAAGTTCGAAGGTTCTCCTGCGCTTCGCTGCAGTTTTTTCTGTTCAAATTCGAAGGTTTCT
CCTGCGCTTTGCTGCAGTTCCTTCTCTCCAAATTCGAAGGTTCTTCCGCGCTTCGCTGCAGTTCCTTCTCTCCAAGTTTGAAGGTTCTCCTACGCTTCGCTGCAGTTTCT
TCTCTTGAAGTTCGAAGGTTCTCCTACGTTTCGCTGCAGTTCCTTCCTCAAAGATCAAAGGCTCTCCACCGCTGTCGTTTCTCCCTCAAATTTAAAGGTCCTTCATTGTC
GTCGTTTCTTCCACAAGTTTGA
Protein sequenceShow/hide protein sequence
MGQGGSPRFVMISIGPRRIEENPRLSPIRAQDGSGIVAASRRLEDSVASLSHFLPSKSSDVTASQRCADSVATLSHFRAYKRFLGYILNTDPHISPHTVQDSYNNLRWHK
TQEDGLKHDHLKFQRRDVSGCKKVQENMLLSGMSSSSSISRWGQISVGIENKIRFNGADMPCGLVEWVNEYVTVFHEAGRRAREGEHEDVSRERVQKERKKRKLLEETED
EAPSAELKIKAQILIKPSCRTEERTAELKNEAQILFKSCCRIEDQSSDPRQIQLIMEERMAEMQEHINTLMKAIEEKDSQIEHLRKEVDNSKKGEQRTSVFDRIKPPTTG
HSVFQRMSMTTTEEENQCLVSTFTRPSAFQRLSVSTSKKSRSSTSVFDCLKVTNDQPKRKMDKLELKLFDEVNSNEKLHSNIPSRMKRKFSVLINTECSLKFLLQVRRFL
LRYAAVPSPSSKVALRCSSFSPSSKVVLRCSSFSKFEGFSCASLQFLSKQKVLLRFAAVPSSSLKVLSCFATVPSLQVRGFFYALLQFLLSKFEGSPALRSSLFLLQVRR
ITKFEGSITKFEGSPALRCSYFSSSSKVSPALHCSFFSPNSKVLPRFAAVPSLQVRRFSCASLQFFLFKFEGFSCALLQFLLSKFEGSSALRCSSFSPSLKVLLRFAAVS
SLEVRRFSYVSLQFLPQRSKALHRCRFSLKFKGPSLSSFLPQV