; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg039191 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg039191
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNA exonuclease 4
Genome locationscaffold10:43394020..43395754
RNA-Seq ExpressionSpg039191
SyntenySpg039191
Gene Ontology termsGO:0006364 - rRNA processing (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008408 - 3'-5' exonuclease activity (molecular function)
InterPro domainsIPR012337 - Ribonuclease H-like superfamily
IPR013520 - Exonuclease, RNase T/DNA polymerase III
IPR036397 - Ribonuclease H superfamily
IPR037431 - RNA exonuclease 4, DEDDh 3'-5' exonuclease domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_011656270.1 RNA exonuclease 4 [Cucumis sativus]8.1e-14988.11Show/hide
Query:  LGPLPKQECKSIFATRGCKFCLAIVDNSYSQRLHQERCQFSGVNSGLLARFANLGIRDGSTVIDSGRTRGSGAVALACKYVGGGGDGSLDICAKVCLVDE
        +GPLPKQECK+IFATRGCKFCLAI D+SYSQRLHQERCQFS VNSGLLARFANLGIRDGSTVIDSGRTRGSGA+ALACKYVGGG DGS+DICAKVCL+DE
Subjt:  LGPLPKQECKSIFATRGCKFCLAIVDNSYSQRLHQERCQFSGVNSGLLARFANLGIRDGSTVIDSGRTRGSGAVALACKYVGGGGDGSLDICAKVCLVDE

Query:  NENVIFYSYVKPIIPVTNYRYETTGIRPEHFRDAMLLKQVQKKIQDILYNGGEKARVLVGHYVEDDLKRLQIGYPSIMIRDTANYPPLMKTSKLCNSLKY
         ENVIFYSYVKP+  VTNYRYETTGIRPEH RDAM +KQVQKKIQ+ILYNGGEKAR+LVG  VEDDLKRLQIGYPS MIRDTANYPPLMK+SKLCNSLKY
Subjt:  NENVIFYSYVKPIIPVTNYRYETTGIRPEHFRDAMLLKQVQKKIQDILYNGGEKARVLVGHYVEDDLKRLQIGYPSIMIRDTANYPPLMKTSKLCNSLKY

Query:  LAQVYLGFDTQNGIQDPYEDCVVSMRLYKRMRSQVHRIEKHPMACDPQNKNNFAVWRENELERMTPEQMLEISRSDYYCWCMDSRI
        LAQVYLGFD QNGIQDPYE+C+V+MRLYKRMRSQVHR E +PMA DPQNKNNFA+WRENEL+RM+PEQMLEISRSDYYCWCMD RI
Subjt:  LAQVYLGFDTQNGIQDPYEDCVVSMRLYKRMRSQVHRIEKHPMACDPQNKNNFAVWRENELERMTPEQMLEISRSDYYCWCMDSRI

XP_022134351.1 RNA exonuclease 4 isoform X1 [Momordica charantia]2.5e-14586.71Show/hide
Query:  LGPLPKQECKSIFATRGCKFCLAIVDNSYSQRLHQERCQFSGVNSGLLARFANLGIRDGSTVIDSGRTRGSGAVALACKYVGGGGDGSLDICAKVCLVDE
        +GPLPKQECK+IF TRGCKFCLAI+D+ YSQRLHQERCQFSGVNSGLLAR ANLGIRD S V+D GR R +G VALACKYVGGGGDGSLDICAKVCL+DE
Subjt:  LGPLPKQECKSIFATRGCKFCLAIVDNSYSQRLHQERCQFSGVNSGLLARFANLGIRDGSTVIDSGRTRGSGAVALACKYVGGGGDGSLDICAKVCLVDE

Query:  NENVIFYSYVKPIIPVTNYRYETTGIRPEHFRDAMLLKQVQKKIQDILYNGGEKARVLVGHYVEDDLKRLQIGYPSIMIRDTANYPPLMKTSKLCNSLKY
         ENVIFYSYVKPIIPVTNYR+ETTGIRPEH RDAM LKQVQKKIQ+ILYNGGEKARVLVGH VEDDLKRLQIGYP  +IRDTANYPPLMKTSKLCNSLKY
Subjt:  NENVIFYSYVKPIIPVTNYRYETTGIRPEHFRDAMLLKQVQKKIQDILYNGGEKARVLVGHYVEDDLKRLQIGYPSIMIRDTANYPPLMKTSKLCNSLKY

Query:  LAQVYLGFDTQNGIQDPYEDCVVSMRLYKRMRSQVHRIEKHPMACDPQNKNNFAVWRENELERMTPEQMLEISRSDYYCWCMDSRI
        LAQVYLGFD QNGIQDPYEDCV SMRLYKRMRSQVH+IE +PMA DPQNKNNF +WR+NELERMTPE ML+ISRSDYYCWC+D RI
Subjt:  LAQVYLGFDTQNGIQDPYEDCVVSMRLYKRMRSQVHRIEKHPMACDPQNKNNFAVWRENELERMTPEQMLEISRSDYYCWCMDSRI

XP_022134352.1 RNA exonuclease 4 isoform X2 [Momordica charantia]2.5e-14586.71Show/hide
Query:  LGPLPKQECKSIFATRGCKFCLAIVDNSYSQRLHQERCQFSGVNSGLLARFANLGIRDGSTVIDSGRTRGSGAVALACKYVGGGGDGSLDICAKVCLVDE
        +GPLPKQECK+IF TRGCKFCLAI+D+ YSQRLHQERCQFSGVNSGLLAR ANLGIRD S V+D GR R +G VALACKYVGGGGDGSLDICAKVCL+DE
Subjt:  LGPLPKQECKSIFATRGCKFCLAIVDNSYSQRLHQERCQFSGVNSGLLARFANLGIRDGSTVIDSGRTRGSGAVALACKYVGGGGDGSLDICAKVCLVDE

Query:  NENVIFYSYVKPIIPVTNYRYETTGIRPEHFRDAMLLKQVQKKIQDILYNGGEKARVLVGHYVEDDLKRLQIGYPSIMIRDTANYPPLMKTSKLCNSLKY
         ENVIFYSYVKPIIPVTNYR+ETTGIRPEH RDAM LKQVQKKIQ+ILYNGGEKARVLVGH VEDDLKRLQIGYP  +IRDTANYPPLMKTSKLCNSLKY
Subjt:  NENVIFYSYVKPIIPVTNYRYETTGIRPEHFRDAMLLKQVQKKIQDILYNGGEKARVLVGHYVEDDLKRLQIGYPSIMIRDTANYPPLMKTSKLCNSLKY

Query:  LAQVYLGFDTQNGIQDPYEDCVVSMRLYKRMRSQVHRIEKHPMACDPQNKNNFAVWRENELERMTPEQMLEISRSDYYCWCMDSRI
        LAQVYLGFD QNGIQDPYEDCV SMRLYKRMRSQVH+IE +PMA DPQNKNNF +WR+NELERMTPE ML+ISRSDYYCWC+D RI
Subjt:  LAQVYLGFDTQNGIQDPYEDCVVSMRLYKRMRSQVHRIEKHPMACDPQNKNNFAVWRENELERMTPEQMLEISRSDYYCWCMDSRI

XP_022938612.1 RNA exonuclease 4-like [Cucurbita moschata]7.6e-14788.46Show/hide
Query:  LGPLPKQECKSIFATRGCKFCLAIVDNSYSQRLHQERCQFSGVNSGLLARFANLGIRDGSTVIDSGRTRGSGAVALACKYVGGGGDGSLDICAKVCLVDE
        +GPLPKQECK++F  RGCKFCLAI+D+SYSQRLHQERCQFS VNSGLLAR ANLGIRDGST ID GRTRGSG VALACKYV GGGDGSLD+CAKVCL+DE
Subjt:  LGPLPKQECKSIFATRGCKFCLAIVDNSYSQRLHQERCQFSGVNSGLLARFANLGIRDGSTVIDSGRTRGSGAVALACKYVGGGGDGSLDICAKVCLVDE

Query:  NENVIFYSYVKPIIPVTNYRYETTGIRPEHFRDAMLLKQVQKKIQDILYNGGEKARVLVGHYVEDDLKRLQIGYPSIMIRDTANYPPLMKTSKLCNSLKY
        +ENVIFYSYVKPIIPVTNYRYE TGIRPEH RDAM LKQVQKKIQDILYNGGEKARVLVGH VEDDLKRLQIGYPSIMIRD ANYPPLMKTSKLCNSLKY
Subjt:  NENVIFYSYVKPIIPVTNYRYETTGIRPEHFRDAMLLKQVQKKIQDILYNGGEKARVLVGHYVEDDLKRLQIGYPSIMIRDTANYPPLMKTSKLCNSLKY

Query:  LAQVYLGFDTQNGIQDPYEDCVVSMRLYKRMRSQVHRIEKHPMACDPQNKNNFAVWRENELERMTPEQMLEISRSDYYCWCMDSRI
        LAQVYLGF+ QNG+QDPYE+CV  MRLYKRMRSQVHRIE HPMA DPQNKNNFA WRE+ELERM+PEQMLEISRSDYYCWCMD RI
Subjt:  LAQVYLGFDTQNGIQDPYEDCVVSMRLYKRMRSQVHRIEKHPMACDPQNKNNFAVWRENELERMTPEQMLEISRSDYYCWCMDSRI

XP_022993635.1 RNA exonuclease 4-like [Cucurbita maxima]7.6e-14788.46Show/hide
Query:  LGPLPKQECKSIFATRGCKFCLAIVDNSYSQRLHQERCQFSGVNSGLLARFANLGIRDGSTVIDSGRTRGSGAVALACKYVGGGGDGSLDICAKVCLVDE
        +GPLPKQECK++F  RGCKFCLAI+D+SYSQRLHQERCQFS VNSGLLAR ANLGIRDGST ID GRTRGSG VALACKYV GGGDGSLD+CAKVCL+DE
Subjt:  LGPLPKQECKSIFATRGCKFCLAIVDNSYSQRLHQERCQFSGVNSGLLARFANLGIRDGSTVIDSGRTRGSGAVALACKYVGGGGDGSLDICAKVCLVDE

Query:  NENVIFYSYVKPIIPVTNYRYETTGIRPEHFRDAMLLKQVQKKIQDILYNGGEKARVLVGHYVEDDLKRLQIGYPSIMIRDTANYPPLMKTSKLCNSLKY
        +ENVIFYSYVKP IPVTNYRYETTGIRPEH RDAM LKQVQKKIQDILYNGGEKARVLVGH VEDDLKRLQIGYPSIMIRD ANYPPLMKTSKLCNSLKY
Subjt:  NENVIFYSYVKPIIPVTNYRYETTGIRPEHFRDAMLLKQVQKKIQDILYNGGEKARVLVGHYVEDDLKRLQIGYPSIMIRDTANYPPLMKTSKLCNSLKY

Query:  LAQVYLGFDTQNGIQDPYEDCVVSMRLYKRMRSQVHRIEKHPMACDPQNKNNFAVWRENELERMTPEQMLEISRSDYYCWCMDSRI
        LAQVYLGF+ QNG+QDPYE+CV  MRLYKRMRSQVHRIE HPMA DPQNKNNFA WRE+ELERM+PEQMLEISRSDYYCWCMD RI
Subjt:  LAQVYLGFDTQNGIQDPYEDCVVSMRLYKRMRSQVHRIEKHPMACDPQNKNNFAVWRENELERMTPEQMLEISRSDYYCWCMDSRI

TrEMBL top hitse value%identityAlignment
A0A1S3C947 RNA exonuclease 43.6e-12673.74Show/hide
Query:  LGPLPKQECKSIFATRGCKFCLAIVDNSYSQRLHQERCQFSGVNSGLLARFANLGIRDGSTVIDSGRTRGSGAVALACKYVGGGGDGSLDICAKVCLVDE
        +GPLPKQEC++IFATRGCKFCLAI+D+SYSQRLHQERCQFS VNSGLLARFANLGIRDGST+IDSGRTRGSGA+ALACKYVGGG DGSLDICAKVCLVDE
Subjt:  LGPLPKQECKSIFATRGCKFCLAIVDNSYSQRLHQERCQFSGVNSGLLARFANLGIRDGSTVIDSGRTRGSGAVALACKYVGGGGDGSLDICAKVCLVDE

Query:  NENVIFYSYVKPIIPVTNYRYETTGIRPEHFRDAMLLKQVQKKIQDILYNGGE----------KARVLVGHYVEDDLKRLQIGYPSIMIRDTANYPPLMK
         ENVIFYSYVKPIIPVTNYRYE TG+RPEH RDAM LKQVQKKIQ+ L NG +          KAR+LVGH +++ L  LQI YPSIMIRDTA YPPLMK
Subjt:  NENVIFYSYVKPIIPVTNYRYETTGIRPEHFRDAMLLKQVQKKIQDILYNGGE----------KARVLVGHYVEDDLKRLQIGYPSIMIRDTANYPPLMK

Query:  TSKLCNSLKYLAQVYLGFDTQNGIQ-DPYEDCVVSMRLYKRMRSQVHRIEKHPMACDPQNKNNFAVWRENELERMTPEQMLEISRSDYYCWCMDSRI
        TSKL NSL YL Q YLG++ +NG + + YE+CV +MRLY +M+SQVH+ E++P+A DP NK NFA+W++ ELE+MTP+Q+L+ISRSDYYCWC+D+ +
Subjt:  TSKLCNSLKYLAQVYLGFDTQNGIQ-DPYEDCVVSMRLYKRMRSQVHRIEKHPMACDPQNKNNFAVWRENELERMTPEQMLEISRSDYYCWCMDSRI

A0A6J1BXL4 RNA exonuclease 41.2e-14586.71Show/hide
Query:  LGPLPKQECKSIFATRGCKFCLAIVDNSYSQRLHQERCQFSGVNSGLLARFANLGIRDGSTVIDSGRTRGSGAVALACKYVGGGGDGSLDICAKVCLVDE
        +GPLPKQECK+IF TRGCKFCLAI+D+ YSQRLHQERCQFSGVNSGLLAR ANLGIRD S V+D GR R +G VALACKYVGGGGDGSLDICAKVCL+DE
Subjt:  LGPLPKQECKSIFATRGCKFCLAIVDNSYSQRLHQERCQFSGVNSGLLARFANLGIRDGSTVIDSGRTRGSGAVALACKYVGGGGDGSLDICAKVCLVDE

Query:  NENVIFYSYVKPIIPVTNYRYETTGIRPEHFRDAMLLKQVQKKIQDILYNGGEKARVLVGHYVEDDLKRLQIGYPSIMIRDTANYPPLMKTSKLCNSLKY
         ENVIFYSYVKPIIPVTNYR+ETTGIRPEH RDAM LKQVQKKIQ+ILYNGGEKARVLVGH VEDDLKRLQIGYP  +IRDTANYPPLMKTSKLCNSLKY
Subjt:  NENVIFYSYVKPIIPVTNYRYETTGIRPEHFRDAMLLKQVQKKIQDILYNGGEKARVLVGHYVEDDLKRLQIGYPSIMIRDTANYPPLMKTSKLCNSLKY

Query:  LAQVYLGFDTQNGIQDPYEDCVVSMRLYKRMRSQVHRIEKHPMACDPQNKNNFAVWRENELERMTPEQMLEISRSDYYCWCMDSRI
        LAQVYLGFD QNGIQDPYEDCV SMRLYKRMRSQVH+IE +PMA DPQNKNNF +WR+NELERMTPE ML+ISRSDYYCWC+D RI
Subjt:  LAQVYLGFDTQNGIQDPYEDCVVSMRLYKRMRSQVHRIEKHPMACDPQNKNNFAVWRENELERMTPEQMLEISRSDYYCWCMDSRI

A0A6J1BZE0 RNA exonuclease 41.2e-14586.71Show/hide
Query:  LGPLPKQECKSIFATRGCKFCLAIVDNSYSQRLHQERCQFSGVNSGLLARFANLGIRDGSTVIDSGRTRGSGAVALACKYVGGGGDGSLDICAKVCLVDE
        +GPLPKQECK+IF TRGCKFCLAI+D+ YSQRLHQERCQFSGVNSGLLAR ANLGIRD S V+D GR R +G VALACKYVGGGGDGSLDICAKVCL+DE
Subjt:  LGPLPKQECKSIFATRGCKFCLAIVDNSYSQRLHQERCQFSGVNSGLLARFANLGIRDGSTVIDSGRTRGSGAVALACKYVGGGGDGSLDICAKVCLVDE

Query:  NENVIFYSYVKPIIPVTNYRYETTGIRPEHFRDAMLLKQVQKKIQDILYNGGEKARVLVGHYVEDDLKRLQIGYPSIMIRDTANYPPLMKTSKLCNSLKY
         ENVIFYSYVKPIIPVTNYR+ETTGIRPEH RDAM LKQVQKKIQ+ILYNGGEKARVLVGH VEDDLKRLQIGYP  +IRDTANYPPLMKTSKLCNSLKY
Subjt:  NENVIFYSYVKPIIPVTNYRYETTGIRPEHFRDAMLLKQVQKKIQDILYNGGEKARVLVGHYVEDDLKRLQIGYPSIMIRDTANYPPLMKTSKLCNSLKY

Query:  LAQVYLGFDTQNGIQDPYEDCVVSMRLYKRMRSQVHRIEKHPMACDPQNKNNFAVWRENELERMTPEQMLEISRSDYYCWCMDSRI
        LAQVYLGFD QNGIQDPYEDCV SMRLYKRMRSQVH+IE +PMA DPQNKNNF +WR+NELERMTPE ML+ISRSDYYCWC+D RI
Subjt:  LAQVYLGFDTQNGIQDPYEDCVVSMRLYKRMRSQVHRIEKHPMACDPQNKNNFAVWRENELERMTPEQMLEISRSDYYCWCMDSRI

A0A6J1FEK0 RNA exonuclease 43.7e-14788.46Show/hide
Query:  LGPLPKQECKSIFATRGCKFCLAIVDNSYSQRLHQERCQFSGVNSGLLARFANLGIRDGSTVIDSGRTRGSGAVALACKYVGGGGDGSLDICAKVCLVDE
        +GPLPKQECK++F  RGCKFCLAI+D+SYSQRLHQERCQFS VNSGLLAR ANLGIRDGST ID GRTRGSG VALACKYV GGGDGSLD+CAKVCL+DE
Subjt:  LGPLPKQECKSIFATRGCKFCLAIVDNSYSQRLHQERCQFSGVNSGLLARFANLGIRDGSTVIDSGRTRGSGAVALACKYVGGGGDGSLDICAKVCLVDE

Query:  NENVIFYSYVKPIIPVTNYRYETTGIRPEHFRDAMLLKQVQKKIQDILYNGGEKARVLVGHYVEDDLKRLQIGYPSIMIRDTANYPPLMKTSKLCNSLKY
        +ENVIFYSYVKPIIPVTNYRYE TGIRPEH RDAM LKQVQKKIQDILYNGGEKARVLVGH VEDDLKRLQIGYPSIMIRD ANYPPLMKTSKLCNSLKY
Subjt:  NENVIFYSYVKPIIPVTNYRYETTGIRPEHFRDAMLLKQVQKKIQDILYNGGEKARVLVGHYVEDDLKRLQIGYPSIMIRDTANYPPLMKTSKLCNSLKY

Query:  LAQVYLGFDTQNGIQDPYEDCVVSMRLYKRMRSQVHRIEKHPMACDPQNKNNFAVWRENELERMTPEQMLEISRSDYYCWCMDSRI
        LAQVYLGF+ QNG+QDPYE+CV  MRLYKRMRSQVHRIE HPMA DPQNKNNFA WRE+ELERM+PEQMLEISRSDYYCWCMD RI
Subjt:  LAQVYLGFDTQNGIQDPYEDCVVSMRLYKRMRSQVHRIEKHPMACDPQNKNNFAVWRENELERMTPEQMLEISRSDYYCWCMDSRI

A0A6J1JZ30 RNA exonuclease 43.7e-14788.46Show/hide
Query:  LGPLPKQECKSIFATRGCKFCLAIVDNSYSQRLHQERCQFSGVNSGLLARFANLGIRDGSTVIDSGRTRGSGAVALACKYVGGGGDGSLDICAKVCLVDE
        +GPLPKQECK++F  RGCKFCLAI+D+SYSQRLHQERCQFS VNSGLLAR ANLGIRDGST ID GRTRGSG VALACKYV GGGDGSLD+CAKVCL+DE
Subjt:  LGPLPKQECKSIFATRGCKFCLAIVDNSYSQRLHQERCQFSGVNSGLLARFANLGIRDGSTVIDSGRTRGSGAVALACKYVGGGGDGSLDICAKVCLVDE

Query:  NENVIFYSYVKPIIPVTNYRYETTGIRPEHFRDAMLLKQVQKKIQDILYNGGEKARVLVGHYVEDDLKRLQIGYPSIMIRDTANYPPLMKTSKLCNSLKY
        +ENVIFYSYVKP IPVTNYRYETTGIRPEH RDAM LKQVQKKIQDILYNGGEKARVLVGH VEDDLKRLQIGYPSIMIRD ANYPPLMKTSKLCNSLKY
Subjt:  NENVIFYSYVKPIIPVTNYRYETTGIRPEHFRDAMLLKQVQKKIQDILYNGGEKARVLVGHYVEDDLKRLQIGYPSIMIRDTANYPPLMKTSKLCNSLKY

Query:  LAQVYLGFDTQNGIQDPYEDCVVSMRLYKRMRSQVHRIEKHPMACDPQNKNNFAVWRENELERMTPEQMLEISRSDYYCWCMDSRI
        LAQVYLGF+ QNG+QDPYE+CV  MRLYKRMRSQVHRIE HPMA DPQNKNNFA WRE+ELERM+PEQMLEISRSDYYCWCMD RI
Subjt:  LAQVYLGFDTQNGIQDPYEDCVVSMRLYKRMRSQVHRIEKHPMACDPQNKNNFAVWRENELERMTPEQMLEISRSDYYCWCMDSRI

SwissProt top hitse value%identityAlignment
O94375 RNA exonuclease 45.1e-2135.54Show/hide
Query:  VALACKYVGGGGDGSLDICAKVCLVDENENVIFYSYVKPIIPVTNYRYETTGIRPEHFRDAMLLKQVQKKIQDILYNGGEKARVLVGHYVEDDLKRLQIG
        +A+ C+ VG   D  + + A+V +V+ + +V++ +YV+P   VT++R   +G++  H RDA   ++VQ ++  IL N     RVLVGH V +DLK L + 
Subjt:  VALACKYVGGGGDGSLDICAKVCLVDENENVIFYSYVKPIIPVTNYRYETTGIRPEHFRDAMLLKQVQKKIQDILYNGGEKARVLVGHYVEDDLKRLQIG

Query:  YPSIMIRDTANYPPLMKTSK-LCNSLKYLAQVYLGFDTQNGIQDPYEDCVVSMRLYKRMRSQVHRI
        +P  MIRDT+ +    K +K     LK LA+V LG D Q+G     +D   +M LYK+++ ++  +
Subjt:  YPSIMIRDTANYPPLMKTSK-LCNSLKYLAQVYLGFDTQNGIQDPYEDCVVSMRLYKRMRSQVHRI

Q08237 RNA exonuclease 46.7e-2132.07Show/hide
Query:  TVIDSGRTRGSGA-VALACKYVGGGGDGSLDICAKVCLVDENENVIFYSYVKPIIPVTNYRYETTGIRPEHFRDAMLLKQVQKKIQDILYNGGEKARVLV
        T I+S +++  G  +A+ C++VG G +G     A++ +V+   +V+   +VKP   V  +R   +GI+PEH ++A+  K+ QKK  DIL     + R+LV
Subjt:  TVIDSGRTRGSGA-VALACKYVGGGGDGSLDICAKVCLVDENENVIFYSYVKPIIPVTNYRYETTGIRPEHFRDAMLLKQVQKKIQDILYNGGEKARVLV

Query:  GHYVEDDLKRLQIGYPSIMIRDTANYPPLMK--TSKLCNSLKYLAQVYLGFDTQNGIQDPYEDCVVSMRLYKRMRSQVHRIEKH
        GH ++ DL+ L + +P  ++RDT+ + P  K        SLK L +  L    Q G     ED   +M LYK+ +++  +I ++
Subjt:  GHYVEDDLKRLQIGYPSIMIRDTANYPPLMK--TSKLCNSLKYLAQVYLGFDTQNGIQDPYEDCVVSMRLYKRMRSQVHRIEKH

Q4WHF8 RNA exonuclease 41.0e-2136.07Show/hide
Query:  VALACKYVGGGGDGSLD-ICAKVCLVDENENVIFYSYVKPIIPVTNYRYETTGIRPEHFRDAMLLKQVQKKIQDILYNGGEKARVLVGHYVEDDLKRLQI
        VA+ C+ VG G +   D   A+V +V+ N   ++ SYV+P   +T++R   +GI P+H  +A  L+QVQK + +IL       R+LVGH V +DL  L +
Subjt:  VALACKYVGGGGDGSLD-ICAKVCLVDENENVIFYSYVKPIIPVTNYRYETTGIRPEHFRDAMLLKQVQKKIQDILYNGGEKARVLVGHYVEDDLKRLQI

Query:  GYPSIMIRDTANYPPLMKTSKLCN-SLKYLAQVYLGFDTQNGIQDPYEDCVVSMRLYKRMRSQVHR--IEKHPMACDPQNKNN
        G+P   IRDT+ +PP  K +   +  LK LA  +LG + Q+G     ED   +M LY+R +    R  ++K P+      K N
Subjt:  GYPSIMIRDTANYPPLMKTSKLCN-SLKYLAQVYLGFDTQNGIQDPYEDCVVSMRLYKRMRSQVHR--IEKHPMACDPQNKNN

Q6CMT3 RNA exonuclease 48.8e-2134.86Show/hide
Query:  RTRGSGA-VALACKYVGGGGDGSLDICAKVCLVDENENVIFYSYVKPIIPVTNYRYETTGIRPEHFRDAMLLKQVQKKIQDILYNGGEKARVLVGHYVED
        RT G G  V++ C++VG G DG     A+V +V+   NV+   +V+P  PVT++R   +GI+P H  +A+  +  QK++ ++L     K R+LVGH V  
Subjt:  RTRGSGA-VALACKYVGGGGDGSLDICAKVCLVDENENVIFYSYVKPIIPVTNYRYETTGIRPEHFRDAMLLKQVQKKIQDILYNGGEKARVLVGHYVED

Query:  DLKRLQIGYPSIMIRDTANYPPLMK--TSKLCNSLKYLAQVYLGFDTQNGIQDPYEDCVVSMRLYKRMRSQVHRI
        DL  L + +P  MIRDT+ + P  +  +     SLK L +  L  D Q+G     ED   +M LYK  + +  ++
Subjt:  DLKRLQIGYPSIMIRDTANYPPLMK--TSKLCNSLKYLAQVYLGFDTQNGIQDPYEDCVVSMRLYKRMRSQVHRI

Q9GZR2 RNA exonuclease 41.8e-2132.09Show/hide
Query:  GVNSGLLARFANLGIRDGSTVIDSGRTRGSG----AVALACKYVGGGGDGSLDICAKVCLVDENENVIFYSYVKPIIPVTNYRYETTGIRPEHFRDAMLL
        G  +  +AR   LG  +GS  +   + +  G    A+AL C+ VG G  G   + A+V +V++    ++  YVKP  PVT+YR   +GIRPE+ +    L
Subjt:  GVNSGLLARFANLGIRDGSTVIDSGRTRGSG----AVALACKYVGGGGDGSLDICAKVCLVDENENVIFYSYVKPIIPVTNYRYETTGIRPEHFRDAMLL

Query:  KQVQKKIQDILYNGGEKARVLVGHYVEDDLKRLQIGYPSIMIRDTANYPPLMKTSKLCN-SLKYLAQVYLGFDTQNGIQDPYEDCVVSMRLYKRMRSQVH
        + VQK++ ++L     K R+LVGH + +DLK L + +P   IRDT  Y P     K    SL+ L++  LG   Q       +D   +MRLY  ++ +  
Subjt:  KQVQKKIQDILYNGGEKARVLVGHYVEDDLKRLQIGYPSIMIRDTANYPPLMKTSKLCN-SLKYLAQVYLGFDTQNGIQDPYEDCVVSMRLYKRMRSQVH

Query:  RI--EKHPMACDPQN
         +  ++ P+   P +
Subjt:  RI--EKHPMACDPQN

Arabidopsis top hitse value%identityAlignment
AT2G48100.1 Exonuclease family protein2.4e-5840.64Show/hide
Query:  LPKQECKSIFATRGCKFCLAIVDNSYSQRLHQERCQFSGVNSGLLARFANLGIRDGSTVIDSGRTRGSGAVALACKYVGGGGDGSLDICAKVCLVDENEN
        L K  CK+IF  RGC  CL I + +++   H+ +C  S               R+ S+ +   R +   A+AL C+ VGGG DG++D CA VCLVD++EN
Subjt:  LPKQECKSIFATRGCKFCLAIVDNSYSQRLHQERCQFSGVNSGLLARFANLGIRDGSTVIDSGRTRGSGAVALACKYVGGGGDGSLDICAKVCLVDENEN

Query:  VIFYSYVKPIIPVTNYRYETTGIRPEHFRDAMLLKQVQKKIQDIL---YNGGEKARVLVGHYVEDDLKRLQIGYPSIMIRDTANYPPLMKTSKLCNSLKY
        VIF ++V+P++PVT+YR+E TG+  E  +D M L+ V++++   L    N G    +LVGH +  D+  L++ YPS ++RDTA Y PLMKT+ +  SLKY
Subjt:  VIFYSYVKPIIPVTNYRYETTGIRPEHFRDAMLLKQVQKKIQDIL---YNGGEKARVLVGHYVEDDLKRLQIGYPSIMIRDTANYPPLMKTSKLCNSLKY

Query:  LAQVYLGFDTQNGIQDPYEDCVVSMRLYKRMRSQVHRIEKHPMACDPQNKNNFAVWRENELERMTPEQMLEISRSDYYCWCMD
        L + YLG+  Q G  + YEDCV +MRLYKRMR Q H      +       N     ++++LE+M  E++ + S S+Y CWC+D
Subjt:  LAQVYLGFDTQNGIQDPYEDCVVSMRLYKRMRSQVHRIEKHPMACDPQNKNNFAVWRENELERMTPEQMLEISRSDYYCWCMD

AT2G48100.2 Exonuclease family protein2.4e-5840.64Show/hide
Query:  LPKQECKSIFATRGCKFCLAIVDNSYSQRLHQERCQFSGVNSGLLARFANLGIRDGSTVIDSGRTRGSGAVALACKYVGGGGDGSLDICAKVCLVDENEN
        L K  CK+IF  RGC  CL I + +++   H+ +C  S               R+ S+ +   R +   A+AL C+ VGGG DG++D CA VCLVD++EN
Subjt:  LPKQECKSIFATRGCKFCLAIVDNSYSQRLHQERCQFSGVNSGLLARFANLGIRDGSTVIDSGRTRGSGAVALACKYVGGGGDGSLDICAKVCLVDENEN

Query:  VIFYSYVKPIIPVTNYRYETTGIRPEHFRDAMLLKQVQKKIQDIL---YNGGEKARVLVGHYVEDDLKRLQIGYPSIMIRDTANYPPLMKTSKLCNSLKY
        VIF ++V+P++PVT+YR+E TG+  E  +D M L+ V++++   L    N G    +LVGH +  D+  L++ YPS ++RDTA Y PLMKT+ +  SLKY
Subjt:  VIFYSYVKPIIPVTNYRYETTGIRPEHFRDAMLLKQVQKKIQDIL---YNGGEKARVLVGHYVEDDLKRLQIGYPSIMIRDTANYPPLMKTSKLCNSLKY

Query:  LAQVYLGFDTQNGIQDPYEDCVVSMRLYKRMRSQVHRIEKHPMACDPQNKNNFAVWRENELERMTPEQMLEISRSDYYCWCMD
        L + YLG+  Q G  + YEDCV +MRLYKRMR Q H      +       N     ++++LE+M  E++ + S S+Y CWC+D
Subjt:  LAQVYLGFDTQNGIQDPYEDCVVSMRLYKRMRSQVHRIEKHPMACDPQNKNNFAVWRENELERMTPEQMLEISRSDYYCWCMD

AT2G48100.3 Exonuclease family protein2.4e-5840.64Show/hide
Query:  LPKQECKSIFATRGCKFCLAIVDNSYSQRLHQERCQFSGVNSGLLARFANLGIRDGSTVIDSGRTRGSGAVALACKYVGGGGDGSLDICAKVCLVDENEN
        L K  CK+IF  RGC  CL I + +++   H+ +C  S               R+ S+ +   R +   A+AL C+ VGGG DG++D CA VCLVD++EN
Subjt:  LPKQECKSIFATRGCKFCLAIVDNSYSQRLHQERCQFSGVNSGLLARFANLGIRDGSTVIDSGRTRGSGAVALACKYVGGGGDGSLDICAKVCLVDENEN

Query:  VIFYSYVKPIIPVTNYRYETTGIRPEHFRDAMLLKQVQKKIQDIL---YNGGEKARVLVGHYVEDDLKRLQIGYPSIMIRDTANYPPLMKTSKLCNSLKY
        VIF ++V+P++PVT+YR+E TG+  E  +D M L+ V++++   L    N G    +LVGH +  D+  L++ YPS ++RDTA Y PLMKT+ +  SLKY
Subjt:  VIFYSYVKPIIPVTNYRYETTGIRPEHFRDAMLLKQVQKKIQDIL---YNGGEKARVLVGHYVEDDLKRLQIGYPSIMIRDTANYPPLMKTSKLCNSLKY

Query:  LAQVYLGFDTQNGIQDPYEDCVVSMRLYKRMRSQVHRIEKHPMACDPQNKNNFAVWRENELERMTPEQMLEISRSDYYCWCMD
        L + YLG+  Q G  + YEDCV +MRLYKRMR Q H      +       N     ++++LE+M  E++ + S S+Y CWC+D
Subjt:  LAQVYLGFDTQNGIQDPYEDCVVSMRLYKRMRSQVHRIEKHPMACDPQNKNNFAVWRENELERMTPEQMLEISRSDYYCWCMD

AT3G27970.1 Exonuclease family protein1.9e-11164.16Show/hide
Query:  LGPLPKQECKSIFATRGCKFCLAIVDNSYSQRLHQERCQFSGVNSGLLARFANLGIRDGSTVIDSGRTRGSGAVALACKYVGGGGDGSLDICAKVCLVDE
        +GPLPKQECK+IF+ RGC+FC+ I+++  S+R+HQERCQFS VNSGL  R A LG+RD   +ID   +R    VAL+CK VGGG DGSLD+CA+VC+ DE
Subjt:  LGPLPKQECKSIFATRGCKFCLAIVDNSYSQRLHQERCQFSGVNSGLLARFANLGIRDGSTVIDSGRTRGSGAVALACKYVGGGGDGSLDICAKVCLVDE

Query:  NENVIFYSYVKPIIPVTNYRYETTGIRPEHFRDAMLLKQVQKKIQDILYNG---------GEKARVLVGHYVEDDLKRLQIGYPSIMIRDTANYPPLMKT
        ++NVIF++YVKP + VT+YRYETTGIRPE+ RDAM LKQVQ+KIQ+ L NG         G KAR+LVGH ++ DL RLQ+ YPS MIRDTA YPPLMKT
Subjt:  NENVIFYSYVKPIIPVTNYRYETTGIRPEHFRDAMLLKQVQKKIQDILYNG---------GEKARVLVGHYVEDDLKRLQIGYPSIMIRDTANYPPLMKT

Query:  SKLCNSLKYLAQVYLGFDTQNGIQDPYEDCVVSMRLYKRMRSQVHRIEKHPMACDPQNKNNFAVWRENELERMTPEQMLEISRSDYYCWCMDS
        SKL NSLKYL Q YLG+D   GIQDPYEDCV +MRLY RMR Q H+IE +P+A D QN++N   WR++E ERM+P++ML ISRSDYYCWC+DS
Subjt:  SKLCNSLKYLAQVYLGFDTQNGIQDPYEDCVVSMRLYKRMRSQVHRIEKHPMACDPQNKNNFAVWRENELERMTPEQMLEISRSDYYCWCMDS

AT5G40310.1 Exonuclease family protein6.1e-11062.13Show/hide
Query:  FNHLFIFSLGPLPKQECKSIFATRGCKFCLAIVDNSYSQRLHQERCQFSGVNSGLLARFANLGIRDGSTVIDSGRTRGSGAVALACKYVGGGGDGSLDIC
        F+ L    +GPLPKQECK+IF+ RGC+FCL I+++  ++R+HQERCQ S V SGL+ R A LG+R+ ST ID   +R    VAL+CK VGGG DGSLD+C
Subjt:  FNHLFIFSLGPLPKQECKSIFATRGCKFCLAIVDNSYSQRLHQERCQFSGVNSGLLARFANLGIRDGSTVIDSGRTRGSGAVALACKYVGGGGDGSLDIC

Query:  AKVCLVDENENVIFYSYVKPIIPVTNYRYETTGIRPEHFRDAMLLKQVQKKIQDILYNG---------GEKARVLVGHYVEDDLKRLQIGYPSIMIRDTA
        A+VC+ DE+ENV+F++YVKP IPVTNYRYE TGIRPE+ RDAM LK  Q+K+Q+ L NG           KAR+LVGH +++ L  LQ+ Y S MIRDTA
Subjt:  AKVCLVDENENVIFYSYVKPIIPVTNYRYETTGIRPEHFRDAMLLKQVQKKIQDILYNG---------GEKARVLVGHYVEDDLKRLQIGYPSIMIRDTA

Query:  NYPPLMKTSKLCNSLKYLAQVYLGFDTQNGIQDPYEDCVVSMRLYKRMRSQVHRIEKHPMACDPQNKNNFAVWRENELERMTPEQMLEISRSDYYCWCMD
         YPPLMK+SKL NSLKYL Q YLG+D   GIQDPYEDCV +MRLY RMR Q HR E +P+A D QN NNFA WR+NELERM+PE++L++SRSDYYCWC+D
Subjt:  NYPPLMKTSKLCNSLKYLAQVYLGFDTQNGIQDPYEDCVVSMRLYKRMRSQVHRIEKHPMACDPQNKNNFAVWRENELERMTPEQMLEISRSDYYCWCMD

Query:  S
        S
Subjt:  S


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATATATAAGTTTAATCATTTATTCATATTCTCATTAGGGCCGCTCCCAAAGCAAGAATGCAAAAGCATCTTCGCTACGAGAGGATGCAAGTTTTGCTTGGCCATCGT
TGACAATTCTTATTCACAAAGGCTCCACCAAGAAAGATGCCAATTCTCAGGAGTAAATTCAGGGCTTCTTGCTCGTTTCGCCAACCTGGGAATTCGTGACGGTTCGACCG
TCATCGATAGCGGAAGAACTCGAGGTTCCGGTGCCGTGGCATTAGCTTGCAAATATGTAGGTGGCGGCGGTGATGGGTCGCTGGACATCTGCGCCAAGGTCTGCCTGGTT
GATGAGAATGAAAATGTCATCTTCTATAGCTATGTCAAGCCAATAATTCCTGTTACAAATTATAGGTACGAGACGACGGGGATTCGTCCAGAACACTTTAGGGATGCAAT
GCTGCTGAAGCAAGTTCAGAAGAAAATTCAAGACATCCTCTACAATGGAGGTGAGAAAGCTAGGGTTCTTGTGGGTCACTACGTGGAAGACGATCTCAAACGTCTTCAAA
TCGGATATCCATCCATCATGATAAGGGACACAGCAAATTATCCGCCATTAATGAAGACGAGCAAGCTCTGCAATTCACTCAAGTATCTAGCTCAAGTGTATCTTGGATTT
GACACTCAAAATGGGATACAAGATCCTTATGAAGATTGTGTTGTGAGCATGAGATTGTACAAGAGAATGAGATCACAAGTTCATAGGATAGAGAAGCATCCAATGGCTTG
TGACCCACAAAACAAAAATAACTTTGCAGTTTGGAGGGAAAATGAGCTTGAGAGGATGACCCCAGAACAGATGTTGGAGATTTCTAGGTCTGATTATTATTGTTGGTGCA
TGGACTCCAGGATTTGA
mRNA sequenceShow/hide mRNA sequence
ATGATATATAAGTTTAATCATTTATTCATATTCTCATTAGGGCCGCTCCCAAAGCAAGAATGCAAAAGCATCTTCGCTACGAGAGGATGCAAGTTTTGCTTGGCCATCGT
TGACAATTCTTATTCACAAAGGCTCCACCAAGAAAGATGCCAATTCTCAGGAGTAAATTCAGGGCTTCTTGCTCGTTTCGCCAACCTGGGAATTCGTGACGGTTCGACCG
TCATCGATAGCGGAAGAACTCGAGGTTCCGGTGCCGTGGCATTAGCTTGCAAATATGTAGGTGGCGGCGGTGATGGGTCGCTGGACATCTGCGCCAAGGTCTGCCTGGTT
GATGAGAATGAAAATGTCATCTTCTATAGCTATGTCAAGCCAATAATTCCTGTTACAAATTATAGGTACGAGACGACGGGGATTCGTCCAGAACACTTTAGGGATGCAAT
GCTGCTGAAGCAAGTTCAGAAGAAAATTCAAGACATCCTCTACAATGGAGGTGAGAAAGCTAGGGTTCTTGTGGGTCACTACGTGGAAGACGATCTCAAACGTCTTCAAA
TCGGATATCCATCCATCATGATAAGGGACACAGCAAATTATCCGCCATTAATGAAGACGAGCAAGCTCTGCAATTCACTCAAGTATCTAGCTCAAGTGTATCTTGGATTT
GACACTCAAAATGGGATACAAGATCCTTATGAAGATTGTGTTGTGAGCATGAGATTGTACAAGAGAATGAGATCACAAGTTCATAGGATAGAGAAGCATCCAATGGCTTG
TGACCCACAAAACAAAAATAACTTTGCAGTTTGGAGGGAAAATGAGCTTGAGAGGATGACCCCAGAACAGATGTTGGAGATTTCTAGGTCTGATTATTATTGTTGGTGCA
TGGACTCCAGGATTTGA
Protein sequenceShow/hide protein sequence
MIYKFNHLFIFSLGPLPKQECKSIFATRGCKFCLAIVDNSYSQRLHQERCQFSGVNSGLLARFANLGIRDGSTVIDSGRTRGSGAVALACKYVGGGGDGSLDICAKVCLV
DENENVIFYSYVKPIIPVTNYRYETTGIRPEHFRDAMLLKQVQKKIQDILYNGGEKARVLVGHYVEDDLKRLQIGYPSIMIRDTANYPPLMKTSKLCNSLKYLAQVYLGF
DTQNGIQDPYEDCVVSMRLYKRMRSQVHRIEKHPMACDPQNKNNFAVWRENELERMTPEQMLEISRSDYYCWCMDSRI