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Spg039208 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg039208
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationscaffold10:41190736..41191504
RNA-Seq ExpressionSpg039208
SyntenySpg039208
Gene Ontology termsNA
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041397.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.9e-2132.18Show/hide
Query:  WEEVAATFPCPSSPERPDYYTWIGSTDGVFNTASARALWRPSDSTHGAQAFPESVLKNLWKASFPRKCKFFLWTLLHRRLNMADLLQRKLKPSALNPSRC
        W  + A+ P P     P    W  +++ +F+TAS +     S+++     F  S+ K LWK  FP+KCKFF+WTL+H  +N AD LQ++L    L+P+ C
Subjt:  WEEVAATFPCPSSPERPDYYTWIGSTDGVFNTASARALWRPSDSTHGAQAFPESVLKNLWKASFPRKCKFFLWTLLHRRLNMADLLQRKLKPSALNPSRC

Query:  VLCKAQSESLDHIFLHCHFSVVIWNKLFSVKGLL--FSRPQQIRSFCLEFLAIKPTSQHQLLFQNIVVASLWSL
         +C    E ++H+F+HC +S  +W+K    + LL   S P  ++S      ++   +Q  L+  N +   LW +
Subjt:  VLCKAQSESLDHIFLHCHFSVVIWNKLFSVKGLL--FSRPQQIRSFCLEFLAIKPTSQHQLLFQNIVVASLWSL

KAA0044451.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]4.7e-1931.21Show/hide
Query:  WEEVAATFPCPSSPERPDYYTWIGSTDGVFNTASARALWRPSDSTHGAQAFPESVLKNLWKASFPRKCKFFLWTLLHRRLNMADLLQRKLKPSALNPSRC
        W  + A+ P P          W  +++ +F+TAS + +   S++      F  ++ K LWK  FP+KCKFF+WTL+H  +N AD LQ++L   AL+P+ C
Subjt:  WEEVAATFPCPSSPERPDYYTWIGSTDGVFNTASARALWRPSDSTHGAQAFPESVLKNLWKASFPRKCKFFLWTLLHRRLNMADLLQRKLKPSALNPSRC

Query:  VLCKAQSESLDHIFLHCHFSVVIWNKLFSVKGLLFSR-PQQIRSFCLEFLAIKPTSQHQLLFQNIVVASLWSL
         +C    E ++H+F+HC +S  +W+K  ++  L ++R P  ++S      ++   +Q  L+  N     LW +
Subjt:  VLCKAQSESLDHIFLHCHFSVVIWNKLFSVKGLLFSR-PQQIRSFCLEFLAIKPTSQHQLLFQNIVVASLWSL

KAA0044556.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.9e-2132.18Show/hide
Query:  WEEVAATFPCPSSPERPDYYTWIGSTDGVFNTASARALWRPSDSTHGAQAFPESVLKNLWKASFPRKCKFFLWTLLHRRLNMADLLQRKLKPSALNPSRC
        W  + A+ P P     P    W  +++ +F+TAS +     S+++     F  S+ K LWK  FP+KCKFF+WTL+H  +N AD LQ++L    L+P+ C
Subjt:  WEEVAATFPCPSSPERPDYYTWIGSTDGVFNTASARALWRPSDSTHGAQAFPESVLKNLWKASFPRKCKFFLWTLLHRRLNMADLLQRKLKPSALNPSRC

Query:  VLCKAQSESLDHIFLHCHFSVVIWNKLFSVKGLL--FSRPQQIRSFCLEFLAIKPTSQHQLLFQNIVVASLWSL
         +C    E ++H+F+HC +S  +W+K    + LL   S P  ++S      ++   +Q  L+  N +   LW +
Subjt:  VLCKAQSESLDHIFLHCHFSVVIWNKLFSVKGLL--FSRPQQIRSFCLEFLAIKPTSQHQLLFQNIVVASLWSL

TYK29578.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]4.7e-1931.21Show/hide
Query:  WEEVAATFPCPSSPERPDYYTWIGSTDGVFNTASARALWRPSDSTHGAQAFPESVLKNLWKASFPRKCKFFLWTLLHRRLNMADLLQRKLKPSALNPSRC
        W  + A+ P P          W  +++ +F+TAS + +   S++      F  ++ K LWK  FP+KCKFF+WTL+H  +N AD LQ++L   AL+P+ C
Subjt:  WEEVAATFPCPSSPERPDYYTWIGSTDGVFNTASARALWRPSDSTHGAQAFPESVLKNLWKASFPRKCKFFLWTLLHRRLNMADLLQRKLKPSALNPSRC

Query:  VLCKAQSESLDHIFLHCHFSVVIWNKLFSVKGLLFSR-PQQIRSFCLEFLAIKPTSQHQLLFQNIVVASLWSL
         +C    E ++H+F+HC +S  +W+K  ++  L ++R P  ++S      ++   +Q  L+  N     LW +
Subjt:  VLCKAQSESLDHIFLHCHFSVVIWNKLFSVKGLLFSR-PQQIRSFCLEFLAIKPTSQHQLLFQNIVVASLWSL

XP_031744692.1 uncharacterized protein LOC116405125 [Cucumis sativus]3.3e-2034.3Show/hide
Query:  WEEVAATFPCPSSPERPDYYTWIGSTDGVFNTASARALWRPSDSTHGAQAFPESVLKNLWKASFPRKCKFFLWTLLHRRLNMADLLQRKLKPSALNPSRC
        WE++  + P P      D   W  + +G F  AS + L RP ++          +  NLWK++ P++CKFF+WTLLH  +N  D+LQR+L    L PS C
Subjt:  WEEVAATFPCPSSPERPDYYTWIGSTDGVFNTASARALWRPSDSTHGAQAFPESVLKNLWKASFPRKCKFFLWTLLHRRLNMADLLQRKLKPSALNPSRC

Query:  VLCKAQSESLDHIFLHCHFSVVIWNKLFSVKGLLFSRPQQIRSFCLEFLAIKPTSQHQLLFQNIVVASLWSL
        +LCKA  E   H F HC FS  +  K+  + G     P    + C +    K  ++ Q + Q +V A+LW++
Subjt:  VLCKAQSESLDHIFLHCHFSVVIWNKLFSVKGLLFSRPQQIRSFCLEFLAIKPTSQHQLLFQNIVVASLWSL

TrEMBL top hitse value%identityAlignment
A0A5A7T9I7 LINE-1 retrotransposable element ORF2 protein3.9e-1932Show/hide
Query:  WEEVAATFPCPSSPERPDYYTWIGSTDGVFNTASA-RALWRPSDSTHGAQAFPESVLKNLWKASFPRKCKFFLWTLLHRRLNMADLLQRKLKPSALNPSR
        W  + A+ P P          W  +++ +F+TAS  RA+   +++      F  ++ K LWK  FP+KCKFF+WTL+H  +N AD LQ++L    L+P+ 
Subjt:  WEEVAATFPCPSSPERPDYYTWIGSTDGVFNTASA-RALWRPSDSTHGAQAFPESVLKNLWKASFPRKCKFFLWTLLHRRLNMADLLQRKLKPSALNPSR

Query:  CVLCKAQSESLDHIFLHCHFSVVIWNKLFSVKGLL--FSRPQQIRSFCLEFLAIKPTSQHQLLFQNIVVASLWSL
        C +C    E ++H+F+HC +S  +W+K    K LL   S P  ++S      ++   +Q  L+  N     LW +
Subjt:  CVLCKAQSESLDHIFLHCHFSVVIWNKLFSVKGLL--FSRPQQIRSFCLEFLAIKPTSQHQLLFQNIVVASLWSL

A0A5A7TIB8 LINE-1 retrotransposable element ORF2 protein1.4e-2132.18Show/hide
Query:  WEEVAATFPCPSSPERPDYYTWIGSTDGVFNTASARALWRPSDSTHGAQAFPESVLKNLWKASFPRKCKFFLWTLLHRRLNMADLLQRKLKPSALNPSRC
        W  + A+ P P     P    W  +++ +F+TAS +     S+++     F  S+ K LWK  FP+KCKFF+WTL+H  +N AD LQ++L    L+P+ C
Subjt:  WEEVAATFPCPSSPERPDYYTWIGSTDGVFNTASARALWRPSDSTHGAQAFPESVLKNLWKASFPRKCKFFLWTLLHRRLNMADLLQRKLKPSALNPSRC

Query:  VLCKAQSESLDHIFLHCHFSVVIWNKLFSVKGLL--FSRPQQIRSFCLEFLAIKPTSQHQLLFQNIVVASLWSL
         +C    E ++H+F+HC +S  +W+K    + LL   S P  ++S      ++   +Q  L+  N +   LW +
Subjt:  VLCKAQSESLDHIFLHCHFSVVIWNKLFSVKGLL--FSRPQQIRSFCLEFLAIKPTSQHQLLFQNIVVASLWSL

A0A5A7TR15 LINE-1 retrotransposable element ORF2 protein1.4e-2132.18Show/hide
Query:  WEEVAATFPCPSSPERPDYYTWIGSTDGVFNTASARALWRPSDSTHGAQAFPESVLKNLWKASFPRKCKFFLWTLLHRRLNMADLLQRKLKPSALNPSRC
        W  + A+ P P     P    W  +++ +F+TAS +     S+++     F  S+ K LWK  FP+KCKFF+WTL+H  +N AD LQ++L    L+P+ C
Subjt:  WEEVAATFPCPSSPERPDYYTWIGSTDGVFNTASARALWRPSDSTHGAQAFPESVLKNLWKASFPRKCKFFLWTLLHRRLNMADLLQRKLKPSALNPSRC

Query:  VLCKAQSESLDHIFLHCHFSVVIWNKLFSVKGLL--FSRPQQIRSFCLEFLAIKPTSQHQLLFQNIVVASLWSL
         +C    E ++H+F+HC +S  +W+K    + LL   S P  ++S      ++   +Q  L+  N +   LW +
Subjt:  VLCKAQSESLDHIFLHCHFSVVIWNKLFSVKGLL--FSRPQQIRSFCLEFLAIKPTSQHQLLFQNIVVASLWSL

A0A5A7TSA7 LINE-1 retrotransposable element ORF2 protein2.3e-1931.21Show/hide
Query:  WEEVAATFPCPSSPERPDYYTWIGSTDGVFNTASARALWRPSDSTHGAQAFPESVLKNLWKASFPRKCKFFLWTLLHRRLNMADLLQRKLKPSALNPSRC
        W  + A+ P P          W  +++ +F+TAS + +   S++      F  ++ K LWK  FP+KCKFF+WTL+H  +N AD LQ++L   AL+P+ C
Subjt:  WEEVAATFPCPSSPERPDYYTWIGSTDGVFNTASARALWRPSDSTHGAQAFPESVLKNLWKASFPRKCKFFLWTLLHRRLNMADLLQRKLKPSALNPSRC

Query:  VLCKAQSESLDHIFLHCHFSVVIWNKLFSVKGLLFSR-PQQIRSFCLEFLAIKPTSQHQLLFQNIVVASLWSL
         +C    E ++H+F+HC +S  +W+K  ++  L ++R P  ++S      ++   +Q  L+  N     LW +
Subjt:  VLCKAQSESLDHIFLHCHFSVVIWNKLFSVKGLLFSR-PQQIRSFCLEFLAIKPTSQHQLLFQNIVVASLWSL

A0A5D3E1E3 LINE-1 retrotransposable element ORF2 protein2.3e-1931.21Show/hide
Query:  WEEVAATFPCPSSPERPDYYTWIGSTDGVFNTASARALWRPSDSTHGAQAFPESVLKNLWKASFPRKCKFFLWTLLHRRLNMADLLQRKLKPSALNPSRC
        W  + A+ P P          W  +++ +F+TAS + +   S++      F  ++ K LWK  FP+KCKFF+WTL+H  +N AD LQ++L   AL+P+ C
Subjt:  WEEVAATFPCPSSPERPDYYTWIGSTDGVFNTASARALWRPSDSTHGAQAFPESVLKNLWKASFPRKCKFFLWTLLHRRLNMADLLQRKLKPSALNPSRC

Query:  VLCKAQSESLDHIFLHCHFSVVIWNKLFSVKGLLFSR-PQQIRSFCLEFLAIKPTSQHQLLFQNIVVASLWSL
         +C    E ++H+F+HC +S  +W+K  ++  L ++R P  ++S      ++   +Q  L+  N     LW +
Subjt:  VLCKAQSESLDHIFLHCHFSVVIWNKLFSVKGLLFSR-PQQIRSFCLEFLAIKPTSQHQLLFQNIVVASLWSL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATATTCAAGCCTGGGAGGAGGTGGCTGCCACCTTCCCATGCCCGTCTTCTCCTGAGAGGCCGGACTATTATACATGGATTGGCTCCACAGATGGGGTCTTTAATAC
CGCTTCTGCTCGTGCTTTATGGCGGCCTTCGGACAGCACGCATGGGGCACAGGCTTTCCCGGAGTCGGTGCTGAAAAATCTTTGGAAAGCATCCTTCCCTAGAAAATGCA
AATTTTTCCTCTGGACTCTTCTTCACAGGAGACTTAATATGGCTGACCTCCTTCAAAGAAAGCTCAAACCTTCGGCTTTAAATCCCAGCAGATGTGTTCTTTGCAAAGCC
CAATCAGAGTCGTTAGATCATATTTTCCTTCATTGTCACTTCTCAGTTGTTATTTGGAACAAGCTTTTCAGTGTTAAGGGTCTCCTCTTCTCTCGTCCTCAACAGATTCG
GTCCTTCTGCTTGGAATTTCTTGCCATTAAACCGACATCTCAGCATCAGCTTCTCTTCCAGAATATTGTGGTGGCTTCTTTATGGTCTCTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGATATTCAAGCCTGGGAGGAGGTGGCTGCCACCTTCCCATGCCCGTCTTCTCCTGAGAGGCCGGACTATTATACATGGATTGGCTCCACAGATGGGGTCTTTAATAC
CGCTTCTGCTCGTGCTTTATGGCGGCCTTCGGACAGCACGCATGGGGCACAGGCTTTCCCGGAGTCGGTGCTGAAAAATCTTTGGAAAGCATCCTTCCCTAGAAAATGCA
AATTTTTCCTCTGGACTCTTCTTCACAGGAGACTTAATATGGCTGACCTCCTTCAAAGAAAGCTCAAACCTTCGGCTTTAAATCCCAGCAGATGTGTTCTTTGCAAAGCC
CAATCAGAGTCGTTAGATCATATTTTCCTTCATTGTCACTTCTCAGTTGTTATTTGGAACAAGCTTTTCAGTGTTAAGGGTCTCCTCTTCTCTCGTCCTCAACAGATTCG
GTCCTTCTGCTTGGAATTTCTTGCCATTAAACCGACATCTCAGCATCAGCTTCTCTTCCAGAATATTGTGGTGGCTTCTTTATGGTCTCTTTGA
Protein sequenceShow/hide protein sequence
MDIQAWEEVAATFPCPSSPERPDYYTWIGSTDGVFNTASARALWRPSDSTHGAQAFPESVLKNLWKASFPRKCKFFLWTLLHRRLNMADLLQRKLKPSALNPSRCVLCKA
QSESLDHIFLHCHFSVVIWNKLFSVKGLLFSRPQQIRSFCLEFLAIKPTSQHQLLFQNIVVASLWSL