; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg039288 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg039288
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTranscription initiation factor IIF subunit beta
Genome locationscaffold10:42141927..42149304
RNA-Seq ExpressionSpg039288
SyntenySpg039288
Gene Ontology termsGO:0006367 - transcription initiation from RNA polymerase II promoter (biological process)
GO:0005674 - transcription factor TFIIF complex (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0008168 - methyltransferase activity (molecular function)
InterPro domainsIPR003196 - Transcription initiation factor IIF, beta subunit
IPR011039 - Transcription Factor IIF, Rap30/Rap74, interaction
IPR036388 - Winged helix-like DNA-binding domain superfamily
IPR036390 - Winged helix DNA-binding domain superfamily
IPR040450 - TFIIF beta subunit, HTH domain
IPR040504 - TFIIF, beta subunit, N-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004143805.1 general transcription factor IIF subunit 2 isoform X3 [Cucumis sativus]8.6e-13791.34Show/hide
Query:  MDVDDKSTDRFSSRKLQSNAN-VVVGADFVETNKADRAMWLLKCPQAVTRALSNSSDGPSRAVAKVIVSVDPLQSNDDDDSSSTEFTMELSGTDSGNALR
        MDVD KS DR +SRK Q+N N +VVG DF+ETNKADRAMWLLKCPQ VTRALSNS D PSR VAKVIVSVDPLQSNDDDDSSSTEFTMEL+ TDSGNALR
Subjt:  MDVDDKSTDRFSSRKLQSNAN-VVVGADFVETNKADRAMWLLKCPQAVTRALSNSSDGPSRAVAKVIVSVDPLQSNDDDDSSSTEFTMELSGTDSGNALR

Query:  SYSLNMSTDFIPMSVFSESTQGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSE
        SYSLNMSTDFIPMSVFSES+QGKFT+EGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSE
Subjt:  SYSLNMSTDFIPMSVFSESTQGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSE

Query:  TKRLRKERGELEKIIFRLFERQAYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGEETKPR
        TKRLRKERGELEKIIF+LFERQ YWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEY+ES E+TKPR
Subjt:  TKRLRKERGELEKIIFRLFERQAYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGEETKPR

XP_008465664.1 PREDICTED: general transcription factor IIF subunit 2 isoform X1 [Cucumis melo]2.1e-13590.11Show/hide
Query:  MDVDDKSTDRFSSRKLQ-SNANVVVGADFVETNKADRAMWLLKCPQAVTRALSNSSDGPSRAVAKVIVSVDPLQSNDDDDSSSTEFTMELSGTDSGNALR
        MDVD KS DR +SRK Q +N N+VVG DF+ETNKADRAMWLLKCPQ VTRALSNS D PSR VAKVIVSVDPLQSNDDDDSSSTEFTMEL+ TDSGNALR
Subjt:  MDVDDKSTDRFSSRKLQ-SNANVVVGADFVETNKADRAMWLLKCPQAVTRALSNSSDGPSRAVAKVIVSVDPLQSNDDDDSSSTEFTMELSGTDSGNALR

Query:  SYSLNMSTDFIPMSVFSESTQ------GKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKV
        SY+LNMSTDFIPMSVFSES+Q      GKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKV
Subjt:  SYSLNMSTDFIPMSVFSESTQ------GKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKV

Query:  VSKGSETKRLRKERGELEKIIFRLFERQAYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGEETKPR
        VSKGSETKRLRKERGELEKIIF+LFERQ YWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKES EETKPR
Subjt:  VSKGSETKRLRKERGELEKIIFRLFERQAYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGEETKPR

XP_008465665.1 PREDICTED: general transcription factor IIF subunit 2 isoform X2 [Cucumis melo]2.3e-13792.06Show/hide
Query:  MDVDDKSTDRFSSRKLQ-SNANVVVGADFVETNKADRAMWLLKCPQAVTRALSNSSDGPSRAVAKVIVSVDPLQSNDDDDSSSTEFTMELSGTDSGNALR
        MDVD KS DR +SRK Q +N N+VVG DF+ETNKADRAMWLLKCPQ VTRALSNS D PSR VAKVIVSVDPLQSNDDDDSSSTEFTMEL+ TDSGNALR
Subjt:  MDVDDKSTDRFSSRKLQ-SNANVVVGADFVETNKADRAMWLLKCPQAVTRALSNSSDGPSRAVAKVIVSVDPLQSNDDDDSSSTEFTMELSGTDSGNALR

Query:  SYSLNMSTDFIPMSVFSESTQGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSE
        SY+LNMSTDFIPMSVFSES+QGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSE
Subjt:  SYSLNMSTDFIPMSVFSESTQGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSE

Query:  TKRLRKERGELEKIIFRLFERQAYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGEETKPR
        TKRLRKERGELEKIIF+LFERQ YWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKES EETKPR
Subjt:  TKRLRKERGELEKIIFRLFERQAYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGEETKPR

XP_022133483.1 general transcription factor IIF subunit 2-like [Momordica charantia]1.0e-13792.45Show/hide
Query:  MDVDDKSTDRFSSRKLQSNANVV--VGADFVETNKADRAMWLLKCPQAVTRALSNSSDGPSRAVAKVIVSVDPLQSNDDDDSSSTEFTMELSGTDSGNAL
        MDVDDK  DR SSRKLQ+N N V   G DF+ETNKADRAMWLLKCPQAVTRALSNS DGPSR VAKVIVSVDPLQSNDDDDSSSTEFTMEL+GTDSGN+L
Subjt:  MDVDDKSTDRFSSRKLQSNANVV--VGADFVETNKADRAMWLLKCPQAVTRALSNSSDGPSRAVAKVIVSVDPLQSNDDDDSSSTEFTMELSGTDSGNAL

Query:  RSYSLNMSTDFIPMSVFSESTQGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGS
        RSYSLNMSTDFIPMSVFSES  GKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDV SFGAAEKKKVVSKGS
Subjt:  RSYSLNMSTDFIPMSVFSESTQGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGS

Query:  ETKRLRKERGELEKIIFRLFERQAYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGEETKPR
        ETKRLRKERGELEKIIFRLFERQ YWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESG+ETK R
Subjt:  ETKRLRKERGELEKIIFRLFERQAYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGEETKPR

XP_038889594.1 general transcription factor IIF subunit 2-like [Benincasa hispida]2.2e-14094.18Show/hide
Query:  MDVDDKSTDRFSSRKLQSNANVVVGADFVETNKADRAMWLLKCPQAVTRALSNSSDGPSRAVAKVIVSVDPLQSNDDDDSSSTEFTMELSGTDSGNALRS
        MDVD KS DR SSRKLQ N N VVG DF+ETNKADRAMWLLKCPQ VTRALSNS DGPSR VAKVIVSVDPLQSNDDDDSSSTEFTMEL+GTDSGN LRS
Subjt:  MDVDDKSTDRFSSRKLQSNANVVVGADFVETNKADRAMWLLKCPQAVTRALSNSSDGPSRAVAKVIVSVDPLQSNDDDDSSSTEFTMELSGTDSGNALRS

Query:  YSLNMSTDFIPMSVFSESTQGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSET
        YSLNMSTDFIPMSVFSES+QGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSET
Subjt:  YSLNMSTDFIPMSVFSESTQGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSET

Query:  KRLRKERGELEKIIFRLFERQAYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGEETKP
        KRLRKERGELEKIIFRLFERQ+YWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGEE KP
Subjt:  KRLRKERGELEKIIFRLFERQAYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGEETKP

TrEMBL top hitse value%identityAlignment
A0A1S3CPB8 Transcription initiation factor IIF subunit beta1.1e-13792.06Show/hide
Query:  MDVDDKSTDRFSSRKLQ-SNANVVVGADFVETNKADRAMWLLKCPQAVTRALSNSSDGPSRAVAKVIVSVDPLQSNDDDDSSSTEFTMELSGTDSGNALR
        MDVD KS DR +SRK Q +N N+VVG DF+ETNKADRAMWLLKCPQ VTRALSNS D PSR VAKVIVSVDPLQSNDDDDSSSTEFTMEL+ TDSGNALR
Subjt:  MDVDDKSTDRFSSRKLQ-SNANVVVGADFVETNKADRAMWLLKCPQAVTRALSNSSDGPSRAVAKVIVSVDPLQSNDDDDSSSTEFTMELSGTDSGNALR

Query:  SYSLNMSTDFIPMSVFSESTQGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSE
        SY+LNMSTDFIPMSVFSES+QGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSE
Subjt:  SYSLNMSTDFIPMSVFSESTQGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSE

Query:  TKRLRKERGELEKIIFRLFERQAYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGEETKPR
        TKRLRKERGELEKIIF+LFERQ YWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKES EETKPR
Subjt:  TKRLRKERGELEKIIFRLFERQAYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGEETKPR

A0A1S3CPE2 Transcription initiation factor IIF subunit beta1.0e-13590.11Show/hide
Query:  MDVDDKSTDRFSSRKLQ-SNANVVVGADFVETNKADRAMWLLKCPQAVTRALSNSSDGPSRAVAKVIVSVDPLQSNDDDDSSSTEFTMELSGTDSGNALR
        MDVD KS DR +SRK Q +N N+VVG DF+ETNKADRAMWLLKCPQ VTRALSNS D PSR VAKVIVSVDPLQSNDDDDSSSTEFTMEL+ TDSGNALR
Subjt:  MDVDDKSTDRFSSRKLQ-SNANVVVGADFVETNKADRAMWLLKCPQAVTRALSNSSDGPSRAVAKVIVSVDPLQSNDDDDSSSTEFTMELSGTDSGNALR

Query:  SYSLNMSTDFIPMSVFSESTQ------GKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKV
        SY+LNMSTDFIPMSVFSES+Q      GKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKV
Subjt:  SYSLNMSTDFIPMSVFSESTQ------GKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKV

Query:  VSKGSETKRLRKERGELEKIIFRLFERQAYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGEETKPR
        VSKGSETKRLRKERGELEKIIF+LFERQ YWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKES EETKPR
Subjt:  VSKGSETKRLRKERGELEKIIFRLFERQAYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGEETKPR

A0A6J1BZ89 Transcription initiation factor IIF subunit beta4.9e-13892.45Show/hide
Query:  MDVDDKSTDRFSSRKLQSNANVV--VGADFVETNKADRAMWLLKCPQAVTRALSNSSDGPSRAVAKVIVSVDPLQSNDDDDSSSTEFTMELSGTDSGNAL
        MDVDDK  DR SSRKLQ+N N V   G DF+ETNKADRAMWLLKCPQAVTRALSNS DGPSR VAKVIVSVDPLQSNDDDDSSSTEFTMEL+GTDSGN+L
Subjt:  MDVDDKSTDRFSSRKLQSNANVV--VGADFVETNKADRAMWLLKCPQAVTRALSNSSDGPSRAVAKVIVSVDPLQSNDDDDSSSTEFTMELSGTDSGNAL

Query:  RSYSLNMSTDFIPMSVFSESTQGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGS
        RSYSLNMSTDFIPMSVFSES  GKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDV SFGAAEKKKVVSKGS
Subjt:  RSYSLNMSTDFIPMSVFSESTQGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGS

Query:  ETKRLRKERGELEKIIFRLFERQAYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGEETKPR
        ETKRLRKERGELEKIIFRLFERQ YWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESG+ETK R
Subjt:  ETKRLRKERGELEKIIFRLFERQAYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGEETKPR

A0A6J1HK34 Transcription initiation factor IIF subunit beta8.7e-13590.22Show/hide
Query:  MDVDDKSTDRFSSRKLQSNANVVVGADFVETNKADRAMWLLKCPQAVTRALSNSSDGPSRAVAKVIVSVDPLQSNDDDDSSSTEFTMELSGTDSGNALRS
        MD DDK  DR SSRKL SN++   G DF+ETNKADRAMWLLKCPQ VTRALSNS D PSR VAKVIVSVDPLQSNDDDDSSSTEFTMEL+ TDSG ALR+
Subjt:  MDVDDKSTDRFSSRKLQSNANVVVGADFVETNKADRAMWLLKCPQAVTRALSNSSDGPSRAVAKVIVSVDPLQSNDDDDSSSTEFTMELSGTDSGNALRS

Query:  YSLNMSTDFIPMSVFSESTQGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSET
        YSLNMSTDFIPMSVFSES QGKFTVEGKILNKFDMKPHDQNL+ YGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSE 
Subjt:  YSLNMSTDFIPMSVFSESTQGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSET

Query:  KRLRKERGELEKIIFRLFERQAYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGEETKPR
        KRLRKERGELEKIIFRLFERQ YWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKE+ EETKPR
Subjt:  KRLRKERGELEKIIFRLFERQAYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGEETKPR

A0A6J1JIQ3 Transcription initiation factor IIF subunit beta3.0e-13590.58Show/hide
Query:  MDVDDKSTDRFSSRKLQSNANVVVGADFVETNKADRAMWLLKCPQAVTRALSNSSDGPSRAVAKVIVSVDPLQSNDDDDSSSTEFTMELSGTDSGNALRS
        MD DDK  DR SSRKL SN++ V G DF+ETNKADRAMWLLKCPQ VTRALSNS D PSR VAKVIVSVDPLQSNDDDDSSSTEFTMEL+ TDSG ALR+
Subjt:  MDVDDKSTDRFSSRKLQSNANVVVGADFVETNKADRAMWLLKCPQAVTRALSNSSDGPSRAVAKVIVSVDPLQSNDDDDSSSTEFTMELSGTDSGNALRS

Query:  YSLNMSTDFIPMSVFSESTQGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSET
        YSLNMSTDFIPMSVFSES QGKFTVEGKILNKFDMKPHDQNL+ YGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSE 
Subjt:  YSLNMSTDFIPMSVFSESTQGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSET

Query:  KRLRKERGELEKIIFRLFERQAYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGEETKPR
        KRLRKERGELEKIIFRLFERQ YWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKE+ EETKPR
Subjt:  KRLRKERGELEKIIFRLFERQAYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGEETKPR

SwissProt top hitse value%identityAlignment
P13984 General transcription factor IIF subunit 22.8e-1327.49Show/hide
Query:  KADRAMWLLKCPQAVTRALSNSSDGPSRAVAKVIVSVDPLQSNDDDDSSSTEFTM--ELSGT-DSGNALRSYSLNMSTDFI-------PMSVFSESTQGK
        K +  +WL+K P+ +++  + +S             V  L+       +   FT+  +L+   D G    S S      F+        ++VF+ES+  K
Subjt:  KADRAMWLLKCPQAVTRALSNSSDGPSRAVAKVIVSVDPLQSNDDDDSSSTEFTM--ELSGT-DSGNALRSYSLNMSTDFI-------PMSVFSESTQGK

Query:  FTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSETKRLRKERGELEKIIFRLFERQA
         ++EG ++ + + +P     E Y +L R +  +S    R  Q +D V   + +P+       +    ++K   K  + KR R ++  +  ++F  FE+  
Subjt:  FTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSETKRLRKERGELEKIIFRLFERQA

Query:  YWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKE-SGEE
        Y+  K L+  T QP  Y+KEILK++ V N KG+H+ T+ELKPEY+   GEE
Subjt:  YWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKE-SGEE

P41900 General transcription factor IIF subunit 21.1e-1428.57Show/hide
Query:  VETNKADRAMWLLKCPQAVT----RALSNSSDGPSR------AVAKVIVSVDP-LQSNDDDDSSSTEFTMELSGTDSGNALRSYSLNMSTDFIPMSVFS-
        ++ + A R +WL+K P+ +     +A +N   G  R        A+V +S+ P + + D ++   TE  +++S   +   L  +S    +D    S  S 
Subjt:  VETNKADRAMWLLKCPQAVT----RALSNSSDGPSR------AVAKVIVSVDP-LQSNDDDDSSSTEFTMELSGTDSGNALRSYSLNMSTDFIPMSVFS-

Query:  -ESTQGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSETKRLRKERGELEKIIF
         +    K  +EG+I+ K + +P   N   Y KL  E   K+    R++Q ID +   + +P+      +    E+KK     +E K+ R ++  +  ++F
Subjt:  -ESTQGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSETKRLRKERGELEKIIF

Query:  RLFERQAYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGEETK
          FE+  Y+  K L++ T+QP  Y+KEILKD+C YN K  H+  +ELK EY+    E K
Subjt:  RLFERQAYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGEETK

Q01750 General transcription factor IIF subunit 21.6e-1327.38Show/hide
Query:  KADRAMWLLKCPQAVTRALSNSSDGPSRAVAKVIVSVDPLQSNDDDDSSSTEFTM--ELSGT-DSGNALRSYSLNMSTDFI-------PMSVFSESTQGK
        K +  +WL+K P+ +++  + +   P R        V  L+   +   +   FT+  +L+   D G    S S      F+        ++VF+ES+  K
Subjt:  KADRAMWLLKCPQAVTRALSNSSDGPSRAVAKVIVSVDPLQSNDDDDSSSTEFTM--ELSGT-DSGNALRSYSLNMSTDFI-------PMSVFSESTQGK

Query:  FTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSETKRLRKERGELEKIIFRLFERQA
         ++EG ++ + + +P     E Y KL R +  +S    R  Q  D V   + +P+       +    ++K   K  + KR R ++  +  ++F  FE+  
Subjt:  FTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSETKRLRKERGELEKIIFRLFERQA

Query:  YWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGEETK
        Y+  K L+  T QP  Y+KEILK++ + N KG+H+ T+ELKPEY+    E K
Subjt:  YWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGEETK

Q2T9L9 General transcription factor IIF subunit 22.1e-1326.98Show/hide
Query:  KADRAMWLLKCPQAVTRALSNSSDGPSRAVAKVIVSVDPLQSNDDDDSSSTEFTM--ELSGT-DSGNALRSYSLNMSTDFI-------PMSVFSESTQGK
        K +  +WL+K P+ +++  + +   P R        V  L+   +   +   FT+  +L+   D G    S S      F+        ++VF+ES+  K
Subjt:  KADRAMWLLKCPQAVTRALSNSSDGPSRAVAKVIVSVDPLQSNDDDDSSSTEFTM--ELSGT-DSGNALRSYSLNMSTDFI-------PMSVFSESTQGK

Query:  FTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSETKRLRKERGELEKIIFRLFERQA
         ++EG ++ + + +P     E Y +L R +  +S    R  Q +D V   + +P+       +    ++K   K  + KR R ++  +  ++F  FE+  
Subjt:  FTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSETKRLRKERGELEKIIFRLFERQA

Query:  YWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGEETK
        Y+  K L+  T QP  Y+K+ILK++ V N KG+H+ T+ELKPEY+    E K
Subjt:  YWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGEETK

Q8R0A0 General transcription factor IIF subunit 21.3e-1326.98Show/hide
Query:  KADRAMWLLKCPQAVTRALSNSSDGPSRAVAKVIVSVDPLQSNDDDDSSSTEFTM--ELSGT-DSGNALRSYSLNMSTDFI-------PMSVFSESTQGK
        K +  +WL+K P+ +++  + +S             V  L+   +   +   FT+  +L+   D G    S S      F+        ++VF+ES+  K
Subjt:  KADRAMWLLKCPQAVTRALSNSSDGPSRAVAKVIVSVDPLQSNDDDDSSSTEFTM--ELSGT-DSGNALRSYSLNMSTDFI-------PMSVFSESTQGK

Query:  FTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSETKRLRKERGELEKIIFRLFERQA
         ++EG ++ + + +P     E Y KL R +  +S    R  Q +D V   + +P+       +    ++K   K  + KR R ++  +  ++F  FE+  
Subjt:  FTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSETKRLRKERGELEKIIFRLFERQA

Query:  YWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGEETK
        Y+  K L+  T QP  Y+KEILK++ + N KG+H+ T+ELKPEY+    E K
Subjt:  YWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGEETK

Arabidopsis top hitse value%identityAlignment
AT1G75510.1 Transcription initiation factor IIF, beta subunit3.6e-6451.56Show/hide
Query:  VETNKADRAMWLLKCPQAVTRALSN----------SSDGPSRAVAKVIVSVDPLQSNDDDDSSSTEFTMELSGTDSGNALRSYSLNMSTDFIPMSVFSES
        ++  K+DR++WL+KCP  V +A             SSD P   +AK++  VDPL+     D S  EF M + G + GN  + Y+LNM TDF+PM  FS+ 
Subjt:  VETNKADRAMWLLKCPQAVTRALSN----------SSDGPSRAVAKVIVSVDPLQSNDDDDSSSTEFTMELSGTDSGNALRSYSLNMSTDFIPMSVFSES

Query:  TQGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGM-DVLSFGAAEKKKVVS-KGSETKRLRKERGELEKIIFR
         QG    EGK+ +KFDMKP+ + +E Y +LCRERT K+M K+RQIQVID+  G HMRPMPGM  ++S  + EK+K    K +E KR R++RGELE I+F+
Subjt:  TQGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGM-DVLSFGAAEKKKVVS-KGSETKRLRKERGELEKIIFR

Query:  LFERQAYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGEE
        LFE Q  WT KQL+QETDQP Q++KEIL +LCVYN +G +QGTYELKPEYK+S E+
Subjt:  LFERQAYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGEE

AT3G52270.1 Transcription initiation factor IIF, beta subunit1.7e-7454.89Show/hide
Query:  KLQSNANVVVGADFVETNKADRAMWLLKCPQAVTRALSNSS--------DGPSRAVAKVIVSVDPLQSNDDDDSSSTEFTMELSGTDSGNALRSYSLNMS
        K++ N N     + +ET  A+R+M L+K P  V  +L + S        D P R  AKVI+ VDPL   D+     T+F MEL+  DSGN  R Y+L+MS
Subjt:  KLQSNANVVVGADFVETNKADRAMWLLKCPQAVTRALSNSS--------DGPSRAVAKVIVSVDPLQSNDDDDSSSTEFTMELSGTDSGNALRSYSLNMS

Query:  TDFIPMSVFSESTQGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSETKRLRKE
         DFIPM+VF ES+ GK +VEGKI NKFDM+PH++N+E YG+LCRERT+K M K+RQIQVID+  G HMRPMPGM ++   A EKKK+ ++ SE KR R++
Subjt:  TDFIPMSVFSESTQGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSETKRLRKE

Query:  RGELEKIIFRLFERQAYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGEE
        R E+E+++F LFERQ+ WT + LIQETDQPEQ++K++LKDLC+YNNKG +QGTYELKPEYK++ +E
Subjt:  RGELEKIIFRLFERQAYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGEE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACGTCGACGACAAATCCACCGACCGTTTCAGTTCCAGAAAACTCCAAAGCAATGCCAACGTCGTCGTCGGAGCCGACTTCGTAGAGACGAACAAGGCGGACAGAGC
AATGTGGCTCTTGAAATGCCCGCAAGCCGTAACTCGCGCCCTTTCCAATTCGTCGGATGGCCCCTCTCGTGCGGTCGCTAAGGTCATCGTTTCTGTTGACCCTCTGCAAT
CCAATGACGATGATGATTCTTCATCAACTGAGTTCACTATGGAATTGTCTGGCACTGACTCTGGAAATGCATTAAGGTCCTACTCGTTGAACATGTCCACGGACTTCATT
CCGATGTCTGTATTTTCCGAGTCAACACAAGGCAAGTTTACAGTTGAAGGGAAAATACTGAACAAATTTGACATGAAGCCGCATGATCAAAATCTTGAGAGGTACGGGAA
ACTCTGTCGCGAAAGAACTCACAAGTCTATGACCAAAAGCAGACAGATTCAGGTGATTGATCATGTCACAGGAGGACATATGAGGCCAATGCCAGGGATGGACGTGTTGT
CATTTGGAGCTGCAGAGAAGAAGAAAGTGGTAAGCAAGGGATCGGAAACGAAGAGGTTGAGGAAGGAGCGTGGTGAATTGGAGAAGATCATTTTTAGGCTCTTTGAAAGA
CAAGCATATTGGACGTCAAAACAATTGATTCAAGAGACTGACCAACCTGAACAATATATGAAAGAAATCCTTAAAGACCTTTGTGTCTACAACAACAAGGGTGTTCACCA
AGGAACATATGAGCTGAAGCCAGAATACAAGGAATCGGGTGAGGAAACGAAACCGCGATAG
mRNA sequenceShow/hide mRNA sequence
ATGGACGTCGACGACAAATCCACCGACCGTTTCAGTTCCAGAAAACTCCAAAGCAATGCCAACGTCGTCGTCGGAGCCGACTTCGTAGAGACGAACAAGGCGGACAGAGC
AATGTGGCTCTTGAAATGCCCGCAAGCCGTAACTCGCGCCCTTTCCAATTCGTCGGATGGCCCCTCTCGTGCGGTCGCTAAGGTCATCGTTTCTGTTGACCCTCTGCAAT
CCAATGACGATGATGATTCTTCATCAACTGAGTTCACTATGGAATTGTCTGGCACTGACTCTGGAAATGCATTAAGGTCCTACTCGTTGAACATGTCCACGGACTTCATT
CCGATGTCTGTATTTTCCGAGTCAACACAAGGCAAGTTTACAGTTGAAGGGAAAATACTGAACAAATTTGACATGAAGCCGCATGATCAAAATCTTGAGAGGTACGGGAA
ACTCTGTCGCGAAAGAACTCACAAGTCTATGACCAAAAGCAGACAGATTCAGGTGATTGATCATGTCACAGGAGGACATATGAGGCCAATGCCAGGGATGGACGTGTTGT
CATTTGGAGCTGCAGAGAAGAAGAAAGTGGTAAGCAAGGGATCGGAAACGAAGAGGTTGAGGAAGGAGCGTGGTGAATTGGAGAAGATCATTTTTAGGCTCTTTGAAAGA
CAAGCATATTGGACGTCAAAACAATTGATTCAAGAGACTGACCAACCTGAACAATATATGAAAGAAATCCTTAAAGACCTTTGTGTCTACAACAACAAGGGTGTTCACCA
AGGAACATATGAGCTGAAGCCAGAATACAAGGAATCGGGTGAGGAAACGAAACCGCGATAG
Protein sequenceShow/hide protein sequence
MDVDDKSTDRFSSRKLQSNANVVVGADFVETNKADRAMWLLKCPQAVTRALSNSSDGPSRAVAKVIVSVDPLQSNDDDDSSSTEFTMELSGTDSGNALRSYSLNMSTDFI
PMSVFSESTQGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSETKRLRKERGELEKIIFRLFER
QAYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGEETKPR