; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg039362 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg039362
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationscaffold10:41188142..41190448
RNA-Seq ExpressionSpg039362
SyntenySpg039362
Gene Ontology termsGO:0003824 - catalytic activity (molecular function)
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039950.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]3.5e-1439.58Show/hide
Query:  WSSTSDGLFSTRSARDVLKIPPRQPF-YKPEEAILNHIWKADIPKKCKFFVWMVIHRRLNTADILQKKLKGMMINPNFCLLCKNDAESIDHLLVHC
        W+  S+ +F T S +  +   P  P  + P   +   +WK + PKKCKFF+W +IH  +NTAD LQK+L    ++PN+C +C    E I+HL +HC
Subjt:  WSSTSDGLFSTRSARDVLKIPPRQPF-YKPEEAILNHIWKADIPKKCKFFVWMVIHRRLNTADILQKKLKGMMINPNFCLLCKNDAESIDHLLVHC

KAA0044451.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]7.0e-1540.62Show/hide
Query:  WSSTSDGLFSTRSARDVLKIPPRQPF-YKPEEAILNHIWKADIPKKCKFFVWMVIHRRLNTADILQKKLKGMMINPNFCLLCKNDAESIDHLLVHC
        W   S+ +F T S + +L   P  P  + P   +   +WK + PKKCKFF+W +IH  +NTAD LQK+L    ++PN+C +C    E I+HL +HC
Subjt:  WSSTSDGLFSTRSARDVLKIPPRQPF-YKPEEAILNHIWKADIPKKCKFFVWMVIHRRLNTADILQKKLKGMMINPNFCLLCKNDAESIDHLLVHC

KAA0058105.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]7.0e-1537.5Show/hide
Query:  WSSTSDGLFSTRSARDVLKIPPRQPFYKPEEAILNHIWKADIPKKCKFFVWMVIHRRLNTADILQKKLKGMMINPNFCLLCKNDAESIDHLLVHCE
        W   S  LFS  SA+  +   P +P   P   +L  IWK  +P K KFF+W ++ R+LNT +++Q+++   ++ PN+C+LCK D+E+  HL ++C+
Subjt:  WSSTSDGLFSTRSARDVLKIPPRQPFYKPEEAILNHIWKADIPKKCKFFVWMVIHRRLNTADILQKKLKGMMINPNFCLLCKNDAESIDHLLVHCE

KAA0067274.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]4.5e-1436.84Show/hide
Query:  WSSTSDGLFSTRSARDVLKIPPRQPFYKPEEAILNHIWKADIPKKCKFFVWMVIHRRLNTADILQKKLKGMMINPNFCLLCKNDAESIDHLLVHC
        W  +   ++S  SA+D+       P     E  L H+W++ IP+KCKFF+W ++H++LNT D +QK+   M +NPN+C+ C++  E ++HL + C
Subjt:  WSSTSDGLFSTRSARDVLKIPPRQPFYKPEEAILNHIWKADIPKKCKFFVWMVIHRRLNTADILQKKLKGMMINPNFCLLCKNDAESIDHLLVHC

TYK29578.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]7.0e-1540.62Show/hide
Query:  WSSTSDGLFSTRSARDVLKIPPRQPF-YKPEEAILNHIWKADIPKKCKFFVWMVIHRRLNTADILQKKLKGMMINPNFCLLCKNDAESIDHLLVHC
        W   S+ +F T S + +L   P  P  + P   +   +WK + PKKCKFF+W +IH  +NTAD LQK+L    ++PN+C +C    E I+HL +HC
Subjt:  WSSTSDGLFSTRSARDVLKIPPRQPF-YKPEEAILNHIWKADIPKKCKFFVWMVIHRRLNTADILQKKLKGMMINPNFCLLCKNDAESIDHLLVHC

TrEMBL top hitse value%identityAlignment
A0A5A7T9I7 LINE-1 retrotransposable element ORF2 protein1.7e-1439.58Show/hide
Query:  WSSTSDGLFSTRSARDVLKIPPRQPF-YKPEEAILNHIWKADIPKKCKFFVWMVIHRRLNTADILQKKLKGMMINPNFCLLCKNDAESIDHLLVHC
        W+  S+ +F T S +  +   P  P  + P   +   +WK + PKKCKFF+W +IH  +NTAD LQK+L    ++PN+C +C    E I+HL +HC
Subjt:  WSSTSDGLFSTRSARDVLKIPPRQPF-YKPEEAILNHIWKADIPKKCKFFVWMVIHRRLNTADILQKKLKGMMINPNFCLLCKNDAESIDHLLVHC

A0A5A7TSA7 LINE-1 retrotransposable element ORF2 protein3.4e-1540.62Show/hide
Query:  WSSTSDGLFSTRSARDVLKIPPRQPF-YKPEEAILNHIWKADIPKKCKFFVWMVIHRRLNTADILQKKLKGMMINPNFCLLCKNDAESIDHLLVHC
        W   S+ +F T S + +L   P  P  + P   +   +WK + PKKCKFF+W +IH  +NTAD LQK+L    ++PN+C +C    E I+HL +HC
Subjt:  WSSTSDGLFSTRSARDVLKIPPRQPF-YKPEEAILNHIWKADIPKKCKFFVWMVIHRRLNTADILQKKLKGMMINPNFCLLCKNDAESIDHLLVHC

A0A5A7UWW1 LINE-1 retrotransposable element ORF2 protein3.4e-1537.5Show/hide
Query:  WSSTSDGLFSTRSARDVLKIPPRQPFYKPEEAILNHIWKADIPKKCKFFVWMVIHRRLNTADILQKKLKGMMINPNFCLLCKNDAESIDHLLVHCE
        W   S  LFS  SA+  +   P +P   P   +L  IWK  +P K KFF+W ++ R+LNT +++Q+++   ++ PN+C+LCK D+E+  HL ++C+
Subjt:  WSSTSDGLFSTRSARDVLKIPPRQPFYKPEEAILNHIWKADIPKKCKFFVWMVIHRRLNTADILQKKLKGMMINPNFCLLCKNDAESIDHLLVHCE

A0A5A7VIU9 LINE-1 retrotransposable element ORF2 protein2.2e-1436.84Show/hide
Query:  WSSTSDGLFSTRSARDVLKIPPRQPFYKPEEAILNHIWKADIPKKCKFFVWMVIHRRLNTADILQKKLKGMMINPNFCLLCKNDAESIDHLLVHC
        W  +   ++S  SA+D+       P     E  L H+W++ IP+KCKFF+W ++H++LNT D +QK+   M +NPN+C+ C++  E ++HL + C
Subjt:  WSSTSDGLFSTRSARDVLKIPPRQPFYKPEEAILNHIWKADIPKKCKFFVWMVIHRRLNTADILQKKLKGMMINPNFCLLCKNDAESIDHLLVHC

A0A5D3E1E3 LINE-1 retrotransposable element ORF2 protein3.4e-1540.62Show/hide
Query:  WSSTSDGLFSTRSARDVLKIPPRQPF-YKPEEAILNHIWKADIPKKCKFFVWMVIHRRLNTADILQKKLKGMMINPNFCLLCKNDAESIDHLLVHC
        W   S+ +F T S + +L   P  P  + P   +   +WK + PKKCKFF+W +IH  +NTAD LQK+L    ++PN+C +C    E I+HL +HC
Subjt:  WSSTSDGLFSTRSARDVLKIPPRQPF-YKPEEAILNHIWKADIPKKCKFFVWMVIHRRLNTADILQKKLKGMMINPNFCLLCKNDAESIDHLLVHC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTCACCCCTATTCTTACTTACCTTAGCACCATGCAGTCCCAGGACCATTTGGCCCCTGATGCCCCAGATCGCCCCGAGTCCGCTTGGTTCATCTCGAAACACCTCCG
AATTCCTGAAAACCATAGGAGGAAAAACAGGCATCGGAGGCGGTGTGGCCTTCACCACGCCGGTGTGCAGCAGTTTTTACTGGTCTTGCAGGTCGCGTCTTCCCCGGATT
CTACAAATTCACTGTTGGTGTCACGTGAAGGGCAGGTTAAGAAACCAGAAAGAAACCTGGAGTATGAGCAGAAAGCGTCGAACCAGACTAGGGTCGACCTCGGTATGGAA
AAGGCTGACCCTAACTTCGGAGACTGTTGTCTAAGCAGAAGGAGAGAGAGCCGGGGAGTTTCTGTATCCGACCAACATCGAGAAGACAGAGGAAAAGGACGTCGGGTAGA
AGATGGAGGCCAGATCCGACATGAGCACTCCTTTGCCGATGGCCGAGGCCGAGCAGAAGCCCAATCGCAAAAAGGCCGCAGAAGTTCGTCGCTAAAGACAGCGTCAGGTA
CGTACACATGGAATAATGACAGGAAAAAGTCGGAGGCTCGGGCAAAAGGCCGAGATTTTGTTCGATGGTCATCCACTTCAGACGGCCTCTTTTCAACAAGGTCTGCCCGT
GATGTTCTCAAAATTCCTCCCAGACAACCTTTTTATAAACCAGAGGAGGCTATTTTAAATCACATCTGGAAGGCAGACATCCCAAAAAAGTGTAAATTTTTTGTCTGGAT
GGTAATACACAGAAGATTAAATACTGCTGATATTCTACAAAAGAAGCTGAAGGGGATGATGATTAATCCAAATTTTTGTCTGTTATGTAAGAATGACGCTGAGTCAATTG
ACCACTTGCTTGTCCACTGTGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGCTCACCCCTATTCTTACTTACCTTAGCACCATGCAGTCCCAGGACCATTTGGCCCCTGATGCCCCAGATCGCCCCGAGTCCGCTTGGTTCATCTCGAAACACCTCCG
AATTCCTGAAAACCATAGGAGGAAAAACAGGCATCGGAGGCGGTGTGGCCTTCACCACGCCGGTGTGCAGCAGTTTTTACTGGTCTTGCAGGTCGCGTCTTCCCCGGATT
CTACAAATTCACTGTTGGTGTCACGTGAAGGGCAGGTTAAGAAACCAGAAAGAAACCTGGAGTATGAGCAGAAAGCGTCGAACCAGACTAGGGTCGACCTCGGTATGGAA
AAGGCTGACCCTAACTTCGGAGACTGTTGTCTAAGCAGAAGGAGAGAGAGCCGGGGAGTTTCTGTATCCGACCAACATCGAGAAGACAGAGGAAAAGGACGTCGGGTAGA
AGATGGAGGCCAGATCCGACATGAGCACTCCTTTGCCGATGGCCGAGGCCGAGCAGAAGCCCAATCGCAAAAAGGCCGCAGAAGTTCGTCGCTAAAGACAGCGTCAGGTA
CGTACACATGGAATAATGACAGGAAAAAGTCGGAGGCTCGGGCAAAAGGCCGAGATTTTGTTCGATGGTCATCCACTTCAGACGGCCTCTTTTCAACAAGGTCTGCCCGT
GATGTTCTCAAAATTCCTCCCAGACAACCTTTTTATAAACCAGAGGAGGCTATTTTAAATCACATCTGGAAGGCAGACATCCCAAAAAAGTGTAAATTTTTTGTCTGGAT
GGTAATACACAGAAGATTAAATACTGCTGATATTCTACAAAAGAAGCTGAAGGGGATGATGATTAATCCAAATTTTTGTCTGTTATGTAAGAATGACGCTGAGTCAATTG
ACCACTTGCTTGTCCACTGTGAATGA
Protein sequenceShow/hide protein sequence
MLTPILTYLSTMQSQDHLAPDAPDRPESAWFISKHLRIPENHRRKNRHRRRCGLHHAGVQQFLLVLQVASSPDSTNSLLVSREGQVKKPERNLEYEQKASNQTRVDLGME
KADPNFGDCCLSRRRESRGVSVSDQHREDRGKGRRVEDGGQIRHEHSFADGRGRAEAQSQKGRRSSSLKTASGTYTWNNDRKKSEARAKGRDFVRWSSTSDGLFSTRSAR
DVLKIPPRQPFYKPEEAILNHIWKADIPKKCKFFVWMVIHRRLNTADILQKKLKGMMINPNFCLLCKNDAESIDHLLVHCE