; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg039393 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg039393
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionProtein farnesyltransferase subunit beta
Genome locationscaffold10:46730405..46731796
RNA-Seq ExpressionSpg039393
SyntenySpg039393
Gene Ontology termsGO:0018343 - protein farnesylation (biological process)
GO:0005965 - protein farnesyltransferase complex (cellular component)
GO:0004660 - protein farnesyltransferase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001330 - PFTB repeat
IPR008930 - Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid
IPR026872 - Protein farnesyltransferase subunit beta
IPR045089 - Prenyltransferase subunit beta


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6594044.1 Protein farnesyltransferase subunit beta, partial [Cucurbita argyrosperma subsp. sororia]6.2e-6288.06Show/hide
Query:  VASILNILDDELVHNVGNYILSCQTFEGGIAREPGSEAHGGYTFCGLAAMILINEVQRLDLRSLVDWVVFRQAGLECGFQGRTNKLVDGCYSFWQGGVCS
        VASILNILDDELV NVGNYILSCQTFEGGIA EPGSEAHGGYTFCGLA MILINEV RLDLRSLV+WVVFRQAGLECGFQGRTNKLVDGCYSFWQGGVCS
Subjt:  VASILNILDDELVHNVGNYILSCQTFEGGIAREPGSEAHGGYTFCGLAAMILINEVQRLDLRSLVDWVVFRQAGLECGFQGRTNKLVDGCYSFWQGGVCS

Query:  LLRRLSLDIDEQSIRPEAQEEGSSIDSLSTSTSS
        LL+RLSLDIDEQS++P+AQE GSS D LST   +
Subjt:  LLRRLSLDIDEQSIRPEAQEEGSSIDSLSTSTSS

KAG7017761.1 Protein farnesyltransferase subunit beta [Cucurbita argyrosperma subsp. argyrosperma]6.2e-6288.06Show/hide
Query:  VASILNILDDELVHNVGNYILSCQTFEGGIAREPGSEAHGGYTFCGLAAMILINEVQRLDLRSLVDWVVFRQAGLECGFQGRTNKLVDGCYSFWQGGVCS
        VASILNILDDELV NVGNYILSCQTFEGGIA EPGSEAHGGYTFCGLA MILINEV RLDLRSLV+WVVFRQAGLECGFQGRTNKLVDGCYSFWQGGVCS
Subjt:  VASILNILDDELVHNVGNYILSCQTFEGGIAREPGSEAHGGYTFCGLAAMILINEVQRLDLRSLVDWVVFRQAGLECGFQGRTNKLVDGCYSFWQGGVCS

Query:  LLRRLSLDIDEQSIRPEAQEEGSSIDSLSTSTSS
        LL+RLSLDIDEQS++P+AQE GSS D LST   +
Subjt:  LLRRLSLDIDEQSIRPEAQEEGSSIDSLSTSTSS

XP_022934867.1 protein farnesyltransferase subunit beta [Cucurbita moschata]6.2e-6288.06Show/hide
Query:  VASILNILDDELVHNVGNYILSCQTFEGGIAREPGSEAHGGYTFCGLAAMILINEVQRLDLRSLVDWVVFRQAGLECGFQGRTNKLVDGCYSFWQGGVCS
        VASILNILDDELV NVGNYILSCQTFEGGIA EPGSEAHGGYTFCGLA MILINEV RLDLRSLV+WVVFRQAGLECGFQGRTNKLVDGCYSFWQGGVCS
Subjt:  VASILNILDDELVHNVGNYILSCQTFEGGIAREPGSEAHGGYTFCGLAAMILINEVQRLDLRSLVDWVVFRQAGLECGFQGRTNKLVDGCYSFWQGGVCS

Query:  LLRRLSLDIDEQSIRPEAQEEGSSIDSLSTSTSS
        LL+RLSLDIDEQS++P+AQE GSS D LST   +
Subjt:  LLRRLSLDIDEQSIRPEAQEEGSSIDSLSTSTSS

XP_022982750.1 protein farnesyltransferase subunit beta [Cucurbita maxima]1.8e-6187.31Show/hide
Query:  VASILNILDDELVHNVGNYILSCQTFEGGIAREPGSEAHGGYTFCGLAAMILINEVQRLDLRSLVDWVVFRQAGLECGFQGRTNKLVDGCYSFWQGGVCS
        VASILNILD+ELV NVGNYILSCQTFEGGIA EPGSEAHGGYTFCGLA MILINEV RLDLRSLV+WVVFRQAGLECGFQGRTNKLVDGCYSFWQGGVCS
Subjt:  VASILNILDDELVHNVGNYILSCQTFEGGIAREPGSEAHGGYTFCGLAAMILINEVQRLDLRSLVDWVVFRQAGLECGFQGRTNKLVDGCYSFWQGGVCS

Query:  LLRRLSLDIDEQSIRPEAQEEGSSIDSLSTSTSS
        LL+RLSLDIDEQS++P+AQE GSS D LST   +
Subjt:  LLRRLSLDIDEQSIRPEAQEEGSSIDSLSTSTSS

XP_023527307.1 protein farnesyltransferase subunit beta [Cucurbita pepo subsp. pepo]6.2e-6288.06Show/hide
Query:  VASILNILDDELVHNVGNYILSCQTFEGGIAREPGSEAHGGYTFCGLAAMILINEVQRLDLRSLVDWVVFRQAGLECGFQGRTNKLVDGCYSFWQGGVCS
        VASILNILDDELV NVGNYILSCQTFEGGIA EPGSEAHGGYTFCGLA MILINEV RLDLRSLV+WVVFRQAGLECGFQGRTNKLVDGCYSFWQGGVCS
Subjt:  VASILNILDDELVHNVGNYILSCQTFEGGIAREPGSEAHGGYTFCGLAAMILINEVQRLDLRSLVDWVVFRQAGLECGFQGRTNKLVDGCYSFWQGGVCS

Query:  LLRRLSLDIDEQSIRPEAQEEGSSIDSLSTSTSS
        LL+RLSLDIDEQS++P+AQE GSS D LST   +
Subjt:  LLRRLSLDIDEQSIRPEAQEEGSSIDSLSTSTSS

TrEMBL top hitse value%identityAlignment
A0A0A0LG61 Protein farnesyltransferase subunit beta6.2e-6085.82Show/hide
Query:  VASILNILDDELVHNVGNYILSCQTFEGGIAREPGSEAHGGYTFCGLAAMILINEVQRLDLRSLVDWVVFRQAGLECGFQGRTNKLVDGCYSFWQGGVCS
        VASILNILDDELV NVGNYI SCQTFEGGIA EPGSEAHGGYTFCGLA +ILINEV RLDLRSL+DWVVFRQAGLECGFQGRTNKLVDGCYSFWQGGVCS
Subjt:  VASILNILDDELVHNVGNYILSCQTFEGGIAREPGSEAHGGYTFCGLAAMILINEVQRLDLRSLVDWVVFRQAGLECGFQGRTNKLVDGCYSFWQGGVCS

Query:  LLRRLSLDIDEQSIRPEAQEEGSSIDSLSTSTSS
        LL+RLSLDIDEQS++P+A+ EGSS D+LST   +
Subjt:  LLRRLSLDIDEQSIRPEAQEEGSSIDSLSTSTSS

A0A1S3B910 Protein farnesyltransferase subunit beta8.2e-6085.82Show/hide
Query:  VASILNILDDELVHNVGNYILSCQTFEGGIAREPGSEAHGGYTFCGLAAMILINEVQRLDLRSLVDWVVFRQAGLECGFQGRTNKLVDGCYSFWQGGVCS
        VASILNILDDELV NVGNYI SCQTFEGGIA EPGSEAHGGYTFCGLA +ILINEV RLDLRSL+DWVVFRQAGLECGFQGRTNKLVDGCYSFWQGGVCS
Subjt:  VASILNILDDELVHNVGNYILSCQTFEGGIAREPGSEAHGGYTFCGLAAMILINEVQRLDLRSLVDWVVFRQAGLECGFQGRTNKLVDGCYSFWQGGVCS

Query:  LLRRLSLDIDEQSIRPEAQEEGSSIDSLSTSTSS
        LL+RLSLDIDEQS++P+A+ EGSS D LST   +
Subjt:  LLRRLSLDIDEQSIRPEAQEEGSSIDSLSTSTSS

A0A6J1DXE6 Protein farnesyltransferase subunit beta7.4e-6186.57Show/hide
Query:  VASILNILDDELVHNVGNYILSCQTFEGGIAREPGSEAHGGYTFCGLAAMILINEVQRLDLRSLVDWVVFRQAGLECGFQGRTNKLVDGCYSFWQGGVCS
        VASILNILDDELV NVGNYILSCQTFEGGIA EPGSEAHGGYTFCGLA MILINEV RLDLRSLV+WVVFRQAGLECGFQGRTNKLVDGCYSFWQGGVCS
Subjt:  VASILNILDDELVHNVGNYILSCQTFEGGIAREPGSEAHGGYTFCGLAAMILINEVQRLDLRSLVDWVVFRQAGLECGFQGRTNKLVDGCYSFWQGGVCS

Query:  LLRRLSLDIDEQSIRPEAQEEGSSIDSLSTSTSS
        +L+RLSL+ID+ S+R +AQEEGSSI+SL T T +
Subjt:  LLRRLSLDIDEQSIRPEAQEEGSSIDSLSTSTSS

A0A6J1F3Z8 Protein farnesyltransferase subunit beta3.0e-6288.06Show/hide
Query:  VASILNILDDELVHNVGNYILSCQTFEGGIAREPGSEAHGGYTFCGLAAMILINEVQRLDLRSLVDWVVFRQAGLECGFQGRTNKLVDGCYSFWQGGVCS
        VASILNILDDELV NVGNYILSCQTFEGGIA EPGSEAHGGYTFCGLA MILINEV RLDLRSLV+WVVFRQAGLECGFQGRTNKLVDGCYSFWQGGVCS
Subjt:  VASILNILDDELVHNVGNYILSCQTFEGGIAREPGSEAHGGYTFCGLAAMILINEVQRLDLRSLVDWVVFRQAGLECGFQGRTNKLVDGCYSFWQGGVCS

Query:  LLRRLSLDIDEQSIRPEAQEEGSSIDSLSTSTSS
        LL+RLSLDIDEQS++P+AQE GSS D LST   +
Subjt:  LLRRLSLDIDEQSIRPEAQEEGSSIDSLSTSTSS

A0A6J1J3Q0 Protein farnesyltransferase subunit beta8.7e-6287.31Show/hide
Query:  VASILNILDDELVHNVGNYILSCQTFEGGIAREPGSEAHGGYTFCGLAAMILINEVQRLDLRSLVDWVVFRQAGLECGFQGRTNKLVDGCYSFWQGGVCS
        VASILNILD+ELV NVGNYILSCQTFEGGIA EPGSEAHGGYTFCGLA MILINEV RLDLRSLV+WVVFRQAGLECGFQGRTNKLVDGCYSFWQGGVCS
Subjt:  VASILNILDDELVHNVGNYILSCQTFEGGIAREPGSEAHGGYTFCGLAAMILINEVQRLDLRSLVDWVVFRQAGLECGFQGRTNKLVDGCYSFWQGGVCS

Query:  LLRRLSLDIDEQSIRPEAQEEGSSIDSLSTSTSS
        LL+RLSLDIDEQS++P+AQE GSS D LST   +
Subjt:  LLRRLSLDIDEQSIRPEAQEEGSSIDSLSTSTSS

SwissProt top hitse value%identityAlignment
P49355 Protein farnesyltransferase subunit beta8.5e-3055.77Show/hide
Query:  VASILNILDDELVHNVGNYILSCQTFEGGIAREPGSEAHGGYTFCGLAAMILINEVQRLDLRSLVDWVVFRQAGLECGFQGRTNKLVDGCYSFWQGGVCS
        VAS+ NI+  +L      +I  CQ +EGGI   PG EAHGGYTFCGLAA++++ + + L+L+SL+ WV  RQ   E GFQGR NKLVDGCYSFWQ G+  
Subjt:  VASILNILDDELVHNVGNYILSCQTFEGGIAREPGSEAHGGYTFCGLAAMILINEVQRLDLRSLVDWVVFRQAGLECGFQGRTNKLVDGCYSFWQGGVCS

Query:  LLRR
        LL R
Subjt:  LLRR

Q02293 Protein farnesyltransferase subunit beta8.5e-3055.77Show/hide
Query:  VASILNILDDELVHNVGNYILSCQTFEGGIAREPGSEAHGGYTFCGLAAMILINEVQRLDLRSLVDWVVFRQAGLECGFQGRTNKLVDGCYSFWQGGVCS
        VAS+ NI+  +L      +I  CQ +EGGI   PG EAHGGYTFCGLAA++++ + + L+L+SL+ WV  RQ   E GFQGR NKLVDGCYSFWQ G+  
Subjt:  VASILNILDDELVHNVGNYILSCQTFEGGIAREPGSEAHGGYTFCGLAAMILINEVQRLDLRSLVDWVVFRQAGLECGFQGRTNKLVDGCYSFWQGGVCS

Query:  LLRR
        LL R
Subjt:  LLRR

Q04903 Protein farnesyltransferase subunit beta5.3e-4868.09Show/hide
Query:  VASILNILDDELVHNVGNYILSCQTFEGGIAREPGSEAHGGYTFCGLAAMILINEVQRLDLRSLVDWVVFRQAGLECGFQGRTNKLVDGCYSFWQGGVCS
        VAS+LNILDDEL+ NVG++ILSCQT+EGG+A EPGSEAHGGYTFCGLAAMILI EV RLDL  L+DWVVFRQ G ECGFQGRTNKLVDGCYSFWQGG  +
Subjt:  VASILNILDDELVHNVGNYILSCQTFEGGIAREPGSEAHGGYTFCGLAAMILINEVQRLDLRSLVDWVVFRQAGLECGFQGRTNKLVDGCYSFWQGGVCS

Query:  LLRRLSLDIDEQSIR-------PEAQEEGSSIDSLSTSTSS
        LL+RL   IDEQ           +A EE   +D  S+  +S
Subjt:  LLRRLSLDIDEQSIR-------PEAQEEGSSIDSLSTSTSS

Q38920 Protein farnesyltransferase subunit beta2.8e-4175.24Show/hide
Query:  VASILNILDDELVHNVGNYILSCQTFEGGIAREPGSEAHGGYTFCGLAAMILINEVQRLDLRSLVDWVVFRQAGLECGFQGRTNKLVDGCYSFWQGGVCS
        VASILNI+DDEL   +G+YILSCQT+EGGI  EPGSEAHGGYT+CGLAAMILINEV RL+L SL++W V RQ G+E GFQGRTNKLVDGCY+FWQ   C 
Subjt:  VASILNILDDELVHNVGNYILSCQTFEGGIAREPGSEAHGGYTFCGLAAMILINEVQRLDLRSLVDWVVFRQAGLECGFQGRTNKLVDGCYSFWQGGVCS

Query:  LLRRL
        LL+RL
Subjt:  LLRRL

Q8K2I1 Protein farnesyltransferase subunit beta8.5e-3055.77Show/hide
Query:  VASILNILDDELVHNVGNYILSCQTFEGGIAREPGSEAHGGYTFCGLAAMILINEVQRLDLRSLVDWVVFRQAGLECGFQGRTNKLVDGCYSFWQGGVCS
        VAS+ NI+  +L      +I  CQ +EGGI   PG EAHGGYTFCGLAA++++ + + L+L+SL+ WV  RQ   E GFQGR NKLVDGCYSFWQ G+  
Subjt:  VASILNILDDELVHNVGNYILSCQTFEGGIAREPGSEAHGGYTFCGLAAMILINEVQRLDLRSLVDWVVFRQAGLECGFQGRTNKLVDGCYSFWQGGVCS

Query:  LLRR
        LL R
Subjt:  LLRR

Arabidopsis top hitse value%identityAlignment
AT2G39550.1 Prenyltransferase family protein5.8e-1841.28Show/hide
Query:  NYILSCQTFEGGIAREPGSEAHGGYTFCGLAAMILINEV-----------QRLDLRSLVDWVVFRQAGLECGFQGRTNKLVDGCYSFWQGGVCSLLRRLS
        NYIL+CQ+++GG    PGSE+HGG T+C +A++ L+  +             +D   L++W + RQA  + GFQGRTNK  D CY+FW G V  L+   +
Subjt:  NYILSCQTFEGGIAREPGSEAHGGYTFCGLAAMILINEV-----------QRLDLRSLVDWVVFRQAGLECGFQGRTNKLVDGCYSFWQGGVCSLLRRLS

Query:  LDIDEQSIR
        L ID+ ++R
Subjt:  LDIDEQSIR

AT3G12070.1 RAB geranylgeranyl transferase beta subunit 26.7e-1439.13Show/hide
Query:  SILNILDDELVHNVGNYILSCQTFEGGIAREPGSEAHGGYTFCGLAAMILINEVQRLDLRSLVDWVVFRQAGLECGFQGRTNKLVDGCYSFW
        SIL  LD   V    +YI+SC+  +GG    PG+E+H G  FC + A+ +   + R+D   L  W+  RQ     G  GR  KL D CYS+W
Subjt:  SILNILDDELVHNVGNYILSCQTFEGGIAREPGSEAHGGYTFCGLAAMILINEVQRLDLRSLVDWVVFRQAGLECGFQGRTNKLVDGCYSFW

AT3G12070.2 RAB geranylgeranyl transferase beta subunit 26.7e-1439.13Show/hide
Query:  SILNILDDELVHNVGNYILSCQTFEGGIAREPGSEAHGGYTFCGLAAMILINEVQRLDLRSLVDWVVFRQAGLECGFQGRTNKLVDGCYSFW
        SIL  LD   V    +YI+SC+  +GG    PG+E+H G  FC + A+ +   + R+D   L  W+  RQ     G  GR  KL D CYS+W
Subjt:  SILNILDDELVHNVGNYILSCQTFEGGIAREPGSEAHGGYTFCGLAAMILINEVQRLDLRSLVDWVVFRQAGLECGFQGRTNKLVDGCYSFW

AT5G12210.1 RAB geranylgeranyl transferase beta subunit 12.5e-1340.43Show/hide
Query:  SILNILDDELVHNVGNYILSCQTFEGGIAREPGSEAHGGYTFCGLAAMILINEVQRLDLRSLVDWVVFRQ--AGLECGFQGRTNKLVDGCYSFW
        SIL  LD   V     YI+SC+  +GG    PG+E+H G  FC + A+ +   +  +D  SL  W+  RQ  AG   G  GR  KL D CYS+W
Subjt:  SILNILDDELVHNVGNYILSCQTFEGGIAREPGSEAHGGYTFCGLAAMILINEVQRLDLRSLVDWVVFRQ--AGLECGFQGRTNKLVDGCYSFW

AT5G40280.1 Prenyltransferase family protein2.0e-4275.24Show/hide
Query:  VASILNILDDELVHNVGNYILSCQTFEGGIAREPGSEAHGGYTFCGLAAMILINEVQRLDLRSLVDWVVFRQAGLECGFQGRTNKLVDGCYSFWQGGVCS
        VASILNI+DDEL   +G+YILSCQT+EGGI  EPGSEAHGGYT+CGLAAMILINEV RL+L SL++W V RQ G+E GFQGRTNKLVDGCY+FWQ   C 
Subjt:  VASILNILDDELVHNVGNYILSCQTFEGGIAREPGSEAHGGYTFCGLAAMILINEVQRLDLRSLVDWVVFRQAGLECGFQGRTNKLVDGCYSFWQGGVCS

Query:  LLRRL
        LL+RL
Subjt:  LLRRL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTGCCAGTATATTGAACATCTTGGATGATGAACTAGTTCACAATGTTGGAAACTACATTTTAAGTTGTCAAACTTTTGAAGGTGGCATTGCAAGAGAACCTGGATC
TGAAGCTCATGGTGGGTACACTTTTTGCGGTTTGGCTGCCATGATTCTGATCAATGAAGTCCAGCGGTTGGACTTGAGGAGTTTAGTTGACTGGGTGGTGTTTCGTCAAG
CTGGTTTAGAGTGTGGATTTCAAGGAAGAACAAATAAGTTGGTCGATGGCTGCTACTCGTTCTGGCAGGGAGGTGTTTGCTCACTGTTACGAAGATTAAGTTTGGATATT
GATGAACAATCAATTCGACCTGAAGCTCAAGAAGAAGGCTCTTCCATTGACAGCCTATCAACTAGTACGTCATCAGTTCTCTTTCTTTTCGTTTTAAGATAA
mRNA sequenceShow/hide mRNA sequence
ATGGTTGCCAGTATATTGAACATCTTGGATGATGAACTAGTTCACAATGTTGGAAACTACATTTTAAGTTGTCAAACTTTTGAAGGTGGCATTGCAAGAGAACCTGGATC
TGAAGCTCATGGTGGGTACACTTTTTGCGGTTTGGCTGCCATGATTCTGATCAATGAAGTCCAGCGGTTGGACTTGAGGAGTTTAGTTGACTGGGTGGTGTTTCGTCAAG
CTGGTTTAGAGTGTGGATTTCAAGGAAGAACAAATAAGTTGGTCGATGGCTGCTACTCGTTCTGGCAGGGAGGTGTTTGCTCACTGTTACGAAGATTAAGTTTGGATATT
GATGAACAATCAATTCGACCTGAAGCTCAAGAAGAAGGCTCTTCCATTGACAGCCTATCAACTAGTACGTCATCAGTTCTCTTTCTTTTCGTTTTAAGATAA
Protein sequenceShow/hide protein sequence
MVASILNILDDELVHNVGNYILSCQTFEGGIAREPGSEAHGGYTFCGLAAMILINEVQRLDLRSLVDWVVFRQAGLECGFQGRTNKLVDGCYSFWQGGVCSLLRRLSLDI
DEQSIRPEAQEEGSSIDSLSTSTSSVLFLFVLR