CuGenDBv2

Gene ID	Spg039547
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	60S ribosomal protein L23a
Genome location	scaffold10:42426026..42428477
RNA-Seq Expression	Spg039547
Synteny	Spg039547
Gene Ontology terms	GO:0000027 - ribosomal large subunit assembly (biological process) GO:0006412 - translation (biological process) GO:0022625 - cytosolic large ribosomal subunit (cellular component) GO:0003729 - mRNA binding (molecular function) GO:0003735 - structural constituent of ribosome (molecular function) GO:0019843 - rRNA binding (molecular function)
InterPro domains	IPR001014 - Ribosomal protein L23/L25, conserved site IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily IPR012678 - Ribosomal protein L23/L15e core domain superfamily IPR013025 - Ribosomal protein L25/L23

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6770401.1 hypothetical protein POTOM_026082 [Populus tomentosa]

5.8e-29

100

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Query:  MKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
        MKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Subjt:  MKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII

KAG7031627.1 60S ribosomal protein L23a, partial [Cucurbita argyrosperma subsp. argyrosperma]

5.8e-29

100

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Query:  MKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
        MKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Subjt:  MKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII

KAG9456224.1 hypothetical protein H6P81_000732 [Aristolochia fimbriata]

5.8e-29

100

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Query:  MKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
        MKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Subjt:  MKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII

XP_008463516.1 PREDICTED: 60S ribosomal protein L23a [Cucumis melo]

5.8e-29

100

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Query:  MKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
        MKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Subjt:  MKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII

XP_010554590.1 PREDICTED: 60S ribosomal protein L23a-2 [Tarenaya hassleriana]

5.8e-29

100

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Query:  MKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
        MKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Subjt:  MKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII

TrEMBL top hits

e value

%identity

Alignment

A0A0B0MZ40 60S ribosomal L23a

2.8e-29

100

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Query:  MKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
        MKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Subjt:  MKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII

A0A0D3BQK7 Ribosomal_L23eN domain-containing protein

2.8e-29

100

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Query:  MKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
        MKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Subjt:  MKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII

A0A5J5PYN4 Ribosomal_L23eN domain-containing protein

2.8e-29

100

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Query:  MKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
        MKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Subjt:  MKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII

A0A6J5U8R2 50S ribosomal protein L23, chloroplastic

2.8e-29

100

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Query:  MKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
        MKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Subjt:  MKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII

M5X1F0 50S ribosomal protein L23, chloroplastic

2.8e-29

100

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Query:  MKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
        MKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Subjt:  MKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII

SwissProt top hits

e value

%identity

Alignment

O22644 60S ribosomal protein L23A

8.4e-31

97.14

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Query:  MKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
        MKKIEDNNTLVFIVDIRADKKKIK AVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALD+ANKIGII
Subjt:  MKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII

Q07761 60S ribosomal protein L23a

1.7e-31

98.57

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Query:  MKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
        MKKIEDNNTLVFIVDI+ADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Subjt:  MKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII

Q8LD46 60S ribosomal protein L23a-1

7.6e-32

100

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Query:  MKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
        MKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Subjt:  MKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII

Q9AT35 60S ribosomal protein L23a

2.9e-31

98.57

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Query:  MKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
        MKKIEDNNTLVFIVDIRA+KKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Subjt:  MKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII

Q9M3C3 60S ribosomal protein L23a-2

7.6e-32

100

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Query:  MKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
        MKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Subjt:  MKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII

Arabidopsis top hits

e value

%identity

Alignment

AT2G39460.1 ribosomal protein L23AA

5.4e-33

100

Show/hide

Query:  MKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
        MKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Subjt:  MKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII

AT2G39460.2 ribosomal protein L23AA

5.4e-33

100

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Query:  MKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
        MKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Subjt:  MKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII

AT3G55280.1 ribosomal protein L23AB

5.4e-33

100

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Query:  MKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
        MKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Subjt:  MKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII

AT3G55280.2 ribosomal protein L23AB

5.4e-33

100

Show/hide

Query:  MKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
        MKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Subjt:  MKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII

AT3G55280.3 ribosomal protein L23AB

5.4e-33

100

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Query:  MKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
        MKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Subjt:  MKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII

Sequences

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CDS sequence

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ATGAAGAAGATCGAGGACAATAATACTTTGGTTTTCATCGTGGACATTCGTGCTGATAAGAAAAAGATCAAGGACGCCGTGAAAAAGATGTATGACATCCAGACCAAGAA
AGTGAACACGTTGATCAGGCCTGATGGAACCAAGAAGGCATATGTTAGGCTTACTCCCGATTACGATGCTTTGGATGTTGCAAACAAGATCGGAATCATCTAA

mRNA sequence

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Protein sequence

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MKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII

Spg039547 (gene) of Sponge gourd (cylindrica) v1 genome