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Spg039627 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg039627
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold10:43900232..43901389
RNA-Seq ExpressionSpg039627
SyntenySpg039627
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
RVW33890.1 putative ribonuclease H protein [Vitis vinifera]2.2e-2740.78Show/hide
Query:  RNFLWEGVDEGGGAHLIRWKVVSKPKDLGGLGIDNLRYRNEALLGKWLWHSFNEPNALWRKVIASLYGSHPFEWISSGRMKGSRKNLWIAIASGFPLFSQ
        R+FLW GV EG   HL+RW +V KPK +GGLG+ N+ +RN ALLGKWLW    E +ALW +VI S+YGSH   W ++  ++ S +  W AIA  F  FS 
Subjt:  RNFLWEGVDEGGGAHLIRWKVVSKPKDLGGLGIDNLRYRNEALLGKWLWHSFNEPNALWRKVIASLYGSHPFEWISSGRMKGSRKNLWIAIASGFPLFSQ

Query:  LHSVASVFPDYDFTSPS-----------LDFCRPLTDREATEITCLLSLLADQSFRHGGRDTRFWTLEPSAGFSCASFF
        +  +  V  D + +  S           L+F R L+D E  ++  L+  L D        D R W L  S  FS  SFF
Subjt:  LHSVASVFPDYDFTSPS-----------LDFCRPLTDREATEITCLLSLLADQSFRHGGRDTRFWTLEPSAGFSCASFF

RVW56231.1 putative ribonuclease H protein [Vitis vinifera]2.0e-2842.7Show/hide
Query:  RNFLWEGVDEGGGAHLIRWKVVSKPKDLGGLGIDNLRYRNEALLGKWLWHSFNEPNALWRKVIASLYGSHPFEWISSGRMKGSRKNLWIAIASGFPLFSQ
        RNFLW G  EG   HL+RW+VVS+PK+LGGLG   +  RN ALLGKWLW    E + LW KVI S+YG+HP  W ++  ++ S +  W AIA  F  FS 
Subjt:  RNFLWEGVDEGGGAHLIRWKVVSKPKDLGGLGIDNLRYRNEALLGKWLWHSFNEPNALWRKVIASLYGSHPFEWISSGRMKGSRKNLWIAIASGFPLFSQ

Query:  LHSVASVFPD--------YDFTSPSLD--FCRPLTDREATEITCLLSLLADQSFRHGGRDTRFWTLEPSAGFSCASFF
           + S F +        + F S  L+  F R LTD E   +  L+S L+   F     D+R W+L  S  F+  SFF
Subjt:  LHSVASVFPD--------YDFTSPSLD--FCRPLTDREATEITCLLSLLADQSFRHGGRDTRFWTLEPSAGFSCASFF

RVW56511.1 putative ribonuclease H protein [Vitis vinifera]3.7e-2742.94Show/hide
Query:  RNFLWEGVDEGGGAHLIRWKVVSKPKDLGGLGIDNLRYRNEALLGKWLWHSFNEPNALWRKVIASLYGSHPFEWISSGRMKGSRKNLWIAIASGFPLFSQ
        R+FLW GV EG   HL+RW VV KPK +GGLG+ N+ +RN ALLGKWLW    E +ALW +VI S+YGSH   W ++  ++ S +  W AIA  F  FS 
Subjt:  RNFLWEGVDEGGGAHLIRWKVVSKPKDLGGLGIDNLRYRNEALLGKWLWHSFNEPNALWRKVIASLYGSHPFEWISSGRMKGSRKNLWIAIASGFPLFSQ

Query:  LH--------SVASVF-PDYDFTSPSLDFCRPLTDREATEITCLLSLLADQSFRHGGRDTRFWTLEPSAGFSCASFF
        +         S++SV  P   F   +L+F R L+D E  ++  L+  L D        D R W L  S  FS  SFF
Subjt:  LH--------SVASVF-PDYDFTSPSLDFCRPLTDREATEITCLLSLLADQSFRHGGRDTRFWTLEPSAGFSCASFF

RVX09326.1 LINE-1 retrotransposable element ORF2 protein [Vitis vinifera]4.8e-2741.07Show/hide
Query:  RNFLWEGVDEGGGAHLIRWKVVSKPKDLGGLGIDNLRYRNEALLGKWLWHSFNEPNALWRKVIASLYGSHPFEWISSGRMKGSRKNLWIAIASGFPLFSQ
        R+FLW G ++G   HLIRW+VVS+P+++GGLG      RN ALLGKWLW    E + LW KVIAS+YG+HP  W ++  ++ S +  W AIA  F  FS 
Subjt:  RNFLWEGVDEGGGAHLIRWKVVSKPKDLGGLGIDNLRYRNEALLGKWLWHSFNEPNALWRKVIASLYGSHPFEWISSGRMKGSRKNLWIAIASGFPLFSQ

Query:  LHSVASVFPDYDFTSPSLDFCRPLTDREATEITCLLSLLADQSFRHGGRDTRFWTLEPSAGFSCASFF
           +            + +F R LTD E   +  L+S L          D+R W+L  S  FS  SFF
Subjt:  LHSVASVFPDYDFTSPSLDFCRPLTDREATEITCLLSLLADQSFRHGGRDTRFWTLEPSAGFSCASFF

XP_022151711.1 uncharacterized protein LOC111019624 [Momordica charantia]2.6e-4146.3Show/hide
Query:  MRNFLWEGVDEGGGAHLIRWKVVSKPKDLGGLGIDNLRYRNEALLGKWLWHSFNEPNALWRKVIASLYGSHPFEWISSGRMKGSRKNLWIAIASGFPLFS
        MR+FLWEGV+EGGGAHL+ WK VSKP + GGLG+ NLR RNEA L KWLW  F+EP+ALWRK+I S Y  HP +WI +G  K S  N W AIAS FP+FS
Subjt:  MRNFLWEGVDEGGGAHLIRWKVVSKPKDLGGLGIDNLRYRNEALLGKWLWHSFNEPNALWRKVIASLYGSHPFEWISSGRMKGSRKNLWIAIASGFPLFS

Query:  ---------------------------------------QLHSVASV--FPDYDFTSPSLDFCRPLTDREATEITCLLSLLADQSFRHGGRDTRFWTLEP
                                               +L SVA V  F + D +S SL   R LTD E+ EI  LL LL   S   G  D R W   P
Subjt:  ---------------------------------------QLHSVASV--FPDYDFTSPSLDFCRPLTDREATEITCLLSLLADQSFRHGGRDTRFWTLEP

Query:  SAGFSCASFFRLFLLP
          GFSC+SFF++ + P
Subjt:  SAGFSCASFFRLFLLP

TrEMBL top hitse value%identityAlignment
A0A438DEM1 Putative ribonuclease H protein1.1e-2740.78Show/hide
Query:  RNFLWEGVDEGGGAHLIRWKVVSKPKDLGGLGIDNLRYRNEALLGKWLWHSFNEPNALWRKVIASLYGSHPFEWISSGRMKGSRKNLWIAIASGFPLFSQ
        R+FLW GV EG   HL+RW +V KPK +GGLG+ N+ +RN ALLGKWLW    E +ALW +VI S+YGSH   W ++  ++ S +  W AIA  F  FS 
Subjt:  RNFLWEGVDEGGGAHLIRWKVVSKPKDLGGLGIDNLRYRNEALLGKWLWHSFNEPNALWRKVIASLYGSHPFEWISSGRMKGSRKNLWIAIASGFPLFSQ

Query:  LHSVASVFPDYDFTSPS-----------LDFCRPLTDREATEITCLLSLLADQSFRHGGRDTRFWTLEPSAGFSCASFF
        +  +  V  D + +  S           L+F R L+D E  ++  L+  L D        D R W L  S  FS  SFF
Subjt:  LHSVASVFPDYDFTSPS-----------LDFCRPLTDREATEITCLLSLLADQSFRHGGRDTRFWTLEPSAGFSCASFF

A0A438F8D1 Putative ribonuclease H protein9.5e-2942.7Show/hide
Query:  RNFLWEGVDEGGGAHLIRWKVVSKPKDLGGLGIDNLRYRNEALLGKWLWHSFNEPNALWRKVIASLYGSHPFEWISSGRMKGSRKNLWIAIASGFPLFSQ
        RNFLW G  EG   HL+RW+VVS+PK+LGGLG   +  RN ALLGKWLW    E + LW KVI S+YG+HP  W ++  ++ S +  W AIA  F  FS 
Subjt:  RNFLWEGVDEGGGAHLIRWKVVSKPKDLGGLGIDNLRYRNEALLGKWLWHSFNEPNALWRKVIASLYGSHPFEWISSGRMKGSRKNLWIAIASGFPLFSQ

Query:  LHSVASVFPD--------YDFTSPSLD--FCRPLTDREATEITCLLSLLADQSFRHGGRDTRFWTLEPSAGFSCASFF
           + S F +        + F S  L+  F R LTD E   +  L+S L+   F     D+R W+L  S  F+  SFF
Subjt:  LHSVASVFPD--------YDFTSPSLD--FCRPLTDREATEITCLLSLLADQSFRHGGRDTRFWTLEPSAGFSCASFF

A0A438F983 Putative ribonuclease H protein1.8e-2742.94Show/hide
Query:  RNFLWEGVDEGGGAHLIRWKVVSKPKDLGGLGIDNLRYRNEALLGKWLWHSFNEPNALWRKVIASLYGSHPFEWISSGRMKGSRKNLWIAIASGFPLFSQ
        R+FLW GV EG   HL+RW VV KPK +GGLG+ N+ +RN ALLGKWLW    E +ALW +VI S+YGSH   W ++  ++ S +  W AIA  F  FS 
Subjt:  RNFLWEGVDEGGGAHLIRWKVVSKPKDLGGLGIDNLRYRNEALLGKWLWHSFNEPNALWRKVIASLYGSHPFEWISSGRMKGSRKNLWIAIASGFPLFSQ

Query:  LH--------SVASVF-PDYDFTSPSLDFCRPLTDREATEITCLLSLLADQSFRHGGRDTRFWTLEPSAGFSCASFF
        +         S++SV  P   F   +L+F R L+D E  ++  L+  L D        D R W L  S  FS  SFF
Subjt:  LH--------SVASVF-PDYDFTSPSLDFCRPLTDREATEITCLLSLLADQSFRHGGRDTRFWTLEPSAGFSCASFF

A0A438JK40 LINE-1 retrotransposable element ORF2 protein2.3e-2741.07Show/hide
Query:  RNFLWEGVDEGGGAHLIRWKVVSKPKDLGGLGIDNLRYRNEALLGKWLWHSFNEPNALWRKVIASLYGSHPFEWISSGRMKGSRKNLWIAIASGFPLFSQ
        R+FLW G ++G   HLIRW+VVS+P+++GGLG      RN ALLGKWLW    E + LW KVIAS+YG+HP  W ++  ++ S +  W AIA  F  FS 
Subjt:  RNFLWEGVDEGGGAHLIRWKVVSKPKDLGGLGIDNLRYRNEALLGKWLWHSFNEPNALWRKVIASLYGSHPFEWISSGRMKGSRKNLWIAIASGFPLFSQ

Query:  LHSVASVFPDYDFTSPSLDFCRPLTDREATEITCLLSLLADQSFRHGGRDTRFWTLEPSAGFSCASFF
           +            + +F R LTD E   +  L+S L          D+R W+L  S  FS  SFF
Subjt:  LHSVASVFPDYDFTSPSLDFCRPLTDREATEITCLLSLLADQSFRHGGRDTRFWTLEPSAGFSCASFF

A0A6J1DFI2 uncharacterized protein LOC1110196241.3e-4146.3Show/hide
Query:  MRNFLWEGVDEGGGAHLIRWKVVSKPKDLGGLGIDNLRYRNEALLGKWLWHSFNEPNALWRKVIASLYGSHPFEWISSGRMKGSRKNLWIAIASGFPLFS
        MR+FLWEGV+EGGGAHL+ WK VSKP + GGLG+ NLR RNEA L KWLW  F+EP+ALWRK+I S Y  HP +WI +G  K S  N W AIAS FP+FS
Subjt:  MRNFLWEGVDEGGGAHLIRWKVVSKPKDLGGLGIDNLRYRNEALLGKWLWHSFNEPNALWRKVIASLYGSHPFEWISSGRMKGSRKNLWIAIASGFPLFS

Query:  ---------------------------------------QLHSVASV--FPDYDFTSPSLDFCRPLTDREATEITCLLSLLADQSFRHGGRDTRFWTLEP
                                               +L SVA V  F + D +S SL   R LTD E+ EI  LL LL   S   G  D R W   P
Subjt:  ---------------------------------------QLHSVASV--FPDYDFTSPSLDFCRPLTDREATEITCLLSLLADQSFRHGGRDTRFWTLEP

Query:  SAGFSCASFFRLFLLP
          GFSC+SFF++ + P
Subjt:  SAGFSCASFFRLFLLP

SwissProt top hitse value%identityAlignment
P0C2F6 Putative ribonuclease H protein At1g657504.7e-0937.5Show/hide
Query:  RNFLWEGVDEGGGAHLIRWKVVSKPKDLGGLGIDNLRYRNEALLGKWLWHSFNEPNALWRKVIASLYGSHPFEWISSGRM--KGSRKNLWIAIASG
        R FLW    E    HL++W  V  PK  GGLG+   +  N AL+ K  W    E N+LW  V+   Y  H  E   S  +  KGS  + W +IA G
Subjt:  RNFLWEGVDEGGGAHLIRWKVVSKPKDLGGLGIDNLRYRNEALLGKWLWHSFNEPNALWRKVIASLYGSHPFEWISSGRM--KGSRKNLWIAIASG

Arabidopsis top hitse value%identityAlignment
AT4G29090.1 Ribonuclease H-like superfamily protein1.7e-0635.29Show/hide
Query:  MRNFLWEGVDEGGGAHLIRWKVVSKPKDLGGLGIDNLRYRNEALLGKWLWHSFNEPNALWRKVIASLY
        + +F W    E  G H   W  +S  K  GG+G  ++   N ALLGK +W   + P +L  KV  S Y
Subjt:  MRNFLWEGVDEGGGAHLIRWKVVSKPKDLGGLGIDNLRYRNEALLGKWLWHSFNEPNALWRKVIASLY

ATMG00310.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein3.6e-0430.56Show/hide
Query:  MRNFLWEGVDEGGGAHLIRWKVVSKPK-DLGGLGIDNLRYRNEALLGKWLWHSFNEPNALWRKVIASLYGSH
        M  F W   +       + W+ + K K D GGLG  +L + N+ALL K  +   ++P+ L  +++ S Y  H
Subjt:  MRNFLWEGVDEGGGAHLIRWKVVSKPK-DLGGLGIDNLRYRNEALLGKWLWHSFNEPNALWRKVIASLYGSH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAAACTTTTTGTGGGAAGGTGTGGATGAGGGTGGAGGGGCTCACCTGATCAGATGGAAAGTTGTTTCTAAGCCCAAGGATTTGGGAGGGTTAGGTATTGATAACCT
GAGGTATCGCAACGAGGCCCTTTTGGGGAAATGGTTATGGCACTCCTTTAATGAGCCAAACGCTTTGTGGCGGAAGGTTATTGCGAGTTTGTATGGTTCGCACCCGTTTG
AGTGGATTTCTAGTGGCAGGATGAAAGGATCTAGAAAAAACCTCTGGATTGCTATTGCTTCGGGTTTTCCTCTCTTTTCCCAGTTGCATTCGGTAGCTTCTGTCTTCCCT
GATTACGACTTCACTTCGCCTTCCCTAGACTTTTGTCGCCCCCTTACTGATCGAGAAGCGACAGAGATCACCTGCCTCCTTTCCTTGTTGGCCGACCAGTCGTTTCGCCA
TGGGGGTAGGGACACTAGGTTCTGGACCCTGGAGCCTTCTGCAGGCTTCTCTTGTGCCTCTTTTTTCAGGCTTTTTCTTCTCCCCTTCCTCCTACAGGAGCCTCCATTTA
TTCCTCTTTATGGAAGCCGCAGTGGTGTGTTCTTTGTAGGAGTCAGGAGGAGAACCTTCATCACTTACTTTGGGATTGTCAGTTTGCCTGCTCGATATGGAGTCGGTTCT
TCAGAGCTTTTGGGGTTGTTTCGGCTCGAAACATTGATTGTTCTTCTATTTTTGAGGAAGTTCTTTGGCATCCCCCTTTCAGTGACAAAGGGAGAGTCTTTTGGCAGGCT
TGCTTTTTTGCTATTTTGTGGGGTATTTGGCTACAGAGGAACAGTAAAATCTTTAGATGAGTGGAGAAATCCACGTTTGAGCTTTGGAAGACGATTAGATTTAACTCGTC
TTTGTGGGCATCTGGATCAAAATTTTTTTGTAATTATCAGCTTGGTTTTATTCTCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGAAACTTTTTGTGGGAAGGTGTGGATGAGGGTGGAGGGGCTCACCTGATCAGATGGAAAGTTGTTTCTAAGCCCAAGGATTTGGGAGGGTTAGGTATTGATAACCT
GAGGTATCGCAACGAGGCCCTTTTGGGGAAATGGTTATGGCACTCCTTTAATGAGCCAAACGCTTTGTGGCGGAAGGTTATTGCGAGTTTGTATGGTTCGCACCCGTTTG
AGTGGATTTCTAGTGGCAGGATGAAAGGATCTAGAAAAAACCTCTGGATTGCTATTGCTTCGGGTTTTCCTCTCTTTTCCCAGTTGCATTCGGTAGCTTCTGTCTTCCCT
GATTACGACTTCACTTCGCCTTCCCTAGACTTTTGTCGCCCCCTTACTGATCGAGAAGCGACAGAGATCACCTGCCTCCTTTCCTTGTTGGCCGACCAGTCGTTTCGCCA
TGGGGGTAGGGACACTAGGTTCTGGACCCTGGAGCCTTCTGCAGGCTTCTCTTGTGCCTCTTTTTTCAGGCTTTTTCTTCTCCCCTTCCTCCTACAGGAGCCTCCATTTA
TTCCTCTTTATGGAAGCCGCAGTGGTGTGTTCTTTGTAGGAGTCAGGAGGAGAACCTTCATCACTTACTTTGGGATTGTCAGTTTGCCTGCTCGATATGGAGTCGGTTCT
TCAGAGCTTTTGGGGTTGTTTCGGCTCGAAACATTGATTGTTCTTCTATTTTTGAGGAAGTTCTTTGGCATCCCCCTTTCAGTGACAAAGGGAGAGTCTTTTGGCAGGCT
TGCTTTTTTGCTATTTTGTGGGGTATTTGGCTACAGAGGAACAGTAAAATCTTTAGATGAGTGGAGAAATCCACGTTTGAGCTTTGGAAGACGATTAGATTTAACTCGTC
TTTGTGGGCATCTGGATCAAAATTTTTTTGTAATTATCAGCTTGGTTTTATTCTCTTAG
Protein sequenceShow/hide protein sequence
MRNFLWEGVDEGGGAHLIRWKVVSKPKDLGGLGIDNLRYRNEALLGKWLWHSFNEPNALWRKVIASLYGSHPFEWISSGRMKGSRKNLWIAIASGFPLFSQLHSVASVFP
DYDFTSPSLDFCRPLTDREATEITCLLSLLADQSFRHGGRDTRFWTLEPSAGFSCASFFRLFLLPFLLQEPPFIPLYGSRSGVFFVGVRRRTFITYFGIVSLPARYGVGS
SELLGLFRLETLIVLLFLRKFFGIPLSVTKGESFGRLAFLLFCGVFGYRGTVKSLDEWRNPRLSFGRRLDLTRLCGHLDQNFFVIISLVLFS