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Spg039714 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg039714
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRVT_3 domain-containing protein
Genome locationscaffold10:42707507..42707875
RNA-Seq ExpressionSpg039714
SyntenySpg039714
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF5447347.1 hypothetical protein F2P56_032905 [Juglans regia]1.2e-0832.26Show/hide
Query:  MRGINKEQRLSNGISERVLVWSPPPTDFWKINVDAAWDAQSS--GIGLICRNKLDLILGASSYFLDLVLPPSMTELMAIYEGVEFVESMGGVKLVVESDC
        M+   ++QRL N    + + WSPPP   WKIN DAA D      GIG+I RN    ++  S     L   P++ E +   E       +G   +++E D 
Subjt:  MRGINKEQRLSNGISERVLVWSPPPTDFWKINVDAAWDAQSS--GIGLICRNKLDLILGASSYFLDLVLPPSMTELMAIYEGVEFVESMGGVKLVVESDC

Query:  LQAINLVLRRYEIWSEISTLVEKI
        LQ I  +  R E WS    ++E +
Subjt:  LQAINLVLRRYEIWSEISTLVEKI

KAF5451602.1 hypothetical protein F2P56_026695 [Juglans regia]2.0e-0832.28Show/hide
Query:  MRGINKEQRLSNGISER---VLVWSPPPTDFWKINVDAAW--DAQSSGIGLICRNKLDLILGASSYFLDLVLPPSMTELMAIYEGVEFVESMGGVKLVVE
        M+   K+ ++ +G+S++   VL WSPPP  F K+NVD A   D   +GIG+I R++   ++ A S     V  P   E   +  G++F    G  KLV+E
Subjt:  MRGINKEQRLSNGISER---VLVWSPPPTDFWKINVDAAW--DAQSSGIGLICRNKLDLILGASSYFLDLVLPPSMTELMAIYEGVEFVESMGGVKLVVE

Query:  SDCLQAINLVLRRYEIWSEISTLVEKI
        +DCL  +N +  +    ++ + L+  I
Subjt:  SDCLQAINLVLRRYEIWSEISTLVEKI

XP_018819751.1 uncharacterized protein LOC108990286 [Juglans regia]2.6e-0832.26Show/hide
Query:  MRGINKEQRLSNGISERVLVWSPPPTDFWKINVDAAWDAQSS--GIGLICRNKLDLILGASSYFLDLVLPPSMTELMAIYEGVEFVESMGGVKLVVESDC
        M+   ++QRL N    + + WSPPP   WKIN DAA D      GIG+I RN    ++  S     L    ++TE +   E       +G   +++E D 
Subjt:  MRGINKEQRLSNGISERVLVWSPPPTDFWKINVDAAWDAQSS--GIGLICRNKLDLILGASSYFLDLVLPPSMTELMAIYEGVEFVESMGGVKLVVESDC

Query:  LQAINLVLRRYEIWSEISTLVEKI
        LQ I ++  R E WS    ++E +
Subjt:  LQAINLVLRRYEIWSEISTLVEKI

XP_018832574.2 uncharacterized protein LOC109000195 [Juglans regia]3.4e-0836.54Show/hide
Query:  WSPPPTDFWKINVDAAW--DAQSSGIGLICRNKLDLILGASSYFLDLVLPPSMTELMAIYEGVEFVESMGGVKLVVESDCLQAINLVLRRYEIWSEISTL
        W PPP  F K+NVD A   D   SGIG++ R++   ++ A++   D V  P+  EL+A+  G++F  S+G   LVVESDCL  +  +    E  S    L
Subjt:  WSPPPTDFWKINVDAAW--DAQSSGIGLICRNKLDLILGASSYFLDLVLPPSMTELMAIYEGVEFVESMGGVKLVVESDCLQAINLVLRRYEIWSEISTL

Query:  VEKI
        ++ +
Subjt:  VEKI

XP_035541483.1 uncharacterized protein LOC118344571 [Juglans regia]1.2e-0832.26Show/hide
Query:  MRGINKEQRLSNGISERVLVWSPPPTDFWKINVDAAWDAQSS--GIGLICRNKLDLILGASSYFLDLVLPPSMTELMAIYEGVEFVESMGGVKLVVESDC
        M+   ++QRL N    + + WSPPP   WKIN DAA D      GIG+I RN    ++  S     L   P++ E +   E       +G   +++E D 
Subjt:  MRGINKEQRLSNGISERVLVWSPPPTDFWKINVDAAWDAQSS--GIGLICRNKLDLILGASSYFLDLVLPPSMTELMAIYEGVEFVESMGGVKLVVESDC

Query:  LQAINLVLRRYEIWSEISTLVEKI
        LQ I  +  R E WS    ++E +
Subjt:  LQAINLVLRRYEIWSEISTLVEKI

TrEMBL top hitse value%identityAlignment
A0A2I4EK26 uncharacterized protein LOC1089902861.2e-0832.26Show/hide
Query:  MRGINKEQRLSNGISERVLVWSPPPTDFWKINVDAAWDAQSS--GIGLICRNKLDLILGASSYFLDLVLPPSMTELMAIYEGVEFVESMGGVKLVVESDC
        M+   ++QRL N    + + WSPPP   WKIN DAA D      GIG+I RN    ++  S     L    ++TE +   E       +G   +++E D 
Subjt:  MRGINKEQRLSNGISERVLVWSPPPTDFWKINVDAAWDAQSS--GIGLICRNKLDLILGASSYFLDLVLPPSMTELMAIYEGVEFVESMGGVKLVVESDC

Query:  LQAINLVLRRYEIWSEISTLVEKI
        LQ I ++  R E WS    ++E +
Subjt:  LQAINLVLRRYEIWSEISTLVEKI

A0A2I4FLN6 uncharacterized protein LOC1090001951.6e-0836.54Show/hide
Query:  WSPPPTDFWKINVDAAW--DAQSSGIGLICRNKLDLILGASSYFLDLVLPPSMTELMAIYEGVEFVESMGGVKLVVESDCLQAINLVLRRYEIWSEISTL
        W PPP  F K+NVD A   D   SGIG++ R++   ++ A++   D V  P+  EL+A+  G++F  S+G   LVVESDCL  +  +    E  S    L
Subjt:  WSPPPTDFWKINVDAAW--DAQSSGIGLICRNKLDLILGASSYFLDLVLPPSMTELMAIYEGVEFVESMGGVKLVVESDCLQAINLVLRRYEIWSEISTL

Query:  VEKI
        ++ +
Subjt:  VEKI

A0A2I4FVF0 uncharacterized protein LOC1090023662.8e-0832.28Show/hide
Query:  MRGINKEQRLSNGISER---VLVWSPPPTDFWKINVDAAW--DAQSSGIGLICRNKLDLILGASSYFLDLVLPPSMTELMAIYEGVEFVESMGGVKLVVE
        M+ + K+ +  +G+S++   VL WSP P  F K+NVD A   D   +GIG+I R++   ++ A S     V  P   E  A+  G++F    G  KLV+E
Subjt:  MRGINKEQRLSNGISER---VLVWSPPPTDFWKINVDAAW--DAQSSGIGLICRNKLDLILGASSYFLDLVLPPSMTELMAIYEGVEFVESMGGVKLVVE

Query:  SDCLQAINLVLRRYEIWSEISTLVEKI
        +DCL  +N +  +    ++ + L+  I
Subjt:  SDCLQAINLVLRRYEIWSEISTLVEKI

A0A6J1BQ49 uncharacterized protein LOC1110047862.1e-0842.35Show/hide
Query:  WSPPPTDFWKINVDAAWDAQSSGIGLICRNKLDLILGASSYFLDLVLPPSMTELMAIYEGVEFVESMGGVKLVVESDCLQAINLV
        W PP     K+N DAA  + S+G+GLI R+   ++L A S FL + L P   E+  I E ++   S    +LVVESDC +AI LV
Subjt:  WSPPPTDFWKINVDAAWDAQSSGIGLICRNKLDLILGASSYFLDLVLPPSMTELMAIYEGVEFVESMGGVKLVVESDCLQAINLV

A0A6P9EAW2 uncharacterized protein LOC1183445715.6e-0932.26Show/hide
Query:  MRGINKEQRLSNGISERVLVWSPPPTDFWKINVDAAWDAQSS--GIGLICRNKLDLILGASSYFLDLVLPPSMTELMAIYEGVEFVESMGGVKLVVESDC
        M+   ++QRL N    + + WSPPP   WKIN DAA D      GIG+I RN    ++  S     L   P++ E +   E       +G   +++E D 
Subjt:  MRGINKEQRLSNGISERVLVWSPPPTDFWKINVDAAWDAQSS--GIGLICRNKLDLILGASSYFLDLVLPPSMTELMAIYEGVEFVESMGGVKLVVESDC

Query:  LQAINLVLRRYEIWSEISTLVEKI
        LQ I  +  R E WS    ++E +
Subjt:  LQAINLVLRRYEIWSEISTLVEKI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAGGAATCAATAAGGAGCAACGATTGTCCAATGGTATCTCGGAGCGAGTATTAGTGTGGTCTCCTCCCCCGACTGATTTCTGGAAAATTAATGTCGATGCGGCTTG
GGATGCTCAATCTTCTGGTATAGGACTGATTTGCAGAAATAAACTCGATTTGATATTGGGTGCATCTTCTTATTTCCTTGATTTAGTGCTTCCTCCGTCAATGACTGAGC
TTATGGCTATCTATGAAGGGGTGGAATTCGTGGAATCCATGGGTGGCGTTAAATTGGTTGTTGAGTCAGATTGCTTACAAGCGATCAATTTGGTGTTGCGCAGATATGAA
ATTTGGAGTGAGATTAGTACCTTGGTGGAGAAAATCTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGAGGAATCAATAAGGAGCAACGATTGTCCAATGGTATCTCGGAGCGAGTATTAGTGTGGTCTCCTCCCCCGACTGATTTCTGGAAAATTAATGTCGATGCGGCTTG
GGATGCTCAATCTTCTGGTATAGGACTGATTTGCAGAAATAAACTCGATTTGATATTGGGTGCATCTTCTTATTTCCTTGATTTAGTGCTTCCTCCGTCAATGACTGAGC
TTATGGCTATCTATGAAGGGGTGGAATTCGTGGAATCCATGGGTGGCGTTAAATTGGTTGTTGAGTCAGATTGCTTACAAGCGATCAATTTGGTGTTGCGCAGATATGAA
ATTTGGAGTGAGATTAGTACCTTGGTGGAGAAAATCTAG
Protein sequenceShow/hide protein sequence
MRGINKEQRLSNGISERVLVWSPPPTDFWKINVDAAWDAQSSGIGLICRNKLDLILGASSYFLDLVLPPSMTELMAIYEGVEFVESMGGVKLVVESDCLQAINLVLRRYE
IWSEISTLVEKI