; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg039768 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg039768
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCRM domain-containing protein
Genome locationscaffold10:46617950..46618552
RNA-Seq ExpressionSpg039768
SyntenySpg039768
Gene Ontology termsGO:0003723 - RNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6571683.1 putative CRM domain-containing protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]3.1e-2967.57Show/hide
Query:  MARGRGLSSAITRDTLFGVISLIRNVSYLSLLNIPTSFEQSSYGSCEHQRSNHIARSPQESTSVHSPHAFFFTRRRYNGCEYLGGFKNWQSVFVRHFSNA
        M+RG  LS AI+RD+L+G ISLIRNVS LSL NIP+SF QSSY SCE+Q SN I++S QESTS+  P  FFF  +RY+ CE LGGF+ WQS  VRHFSN 
Subjt:  MARGRGLSSAITRDTLFGVISLIRNVSYLSLLNIPTSFEQSSYGSCEHQRSNHIARSPQESTSVHSPHAFFFTRRRYNGCEYLGGFKNWQSVFVRHFSNA

Query:  AVELKTDSNVV
        AVELKTDSN+V
Subjt:  AVELKTDSNVV

KAG7011409.1 putative CRM domain-containing protein, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]3.1e-2967.57Show/hide
Query:  MARGRGLSSAITRDTLFGVISLIRNVSYLSLLNIPTSFEQSSYGSCEHQRSNHIARSPQESTSVHSPHAFFFTRRRYNGCEYLGGFKNWQSVFVRHFSNA
        M+RG  LS AI+RD+L+G ISLIRNVS LSL NIP+SF QSSY SCE+Q SN I++S QESTS+  P  FFF  +RY+ CE LGGF+ WQS  VRHFSN 
Subjt:  MARGRGLSSAITRDTLFGVISLIRNVSYLSLLNIPTSFEQSSYGSCEHQRSNHIARSPQESTSVHSPHAFFFTRRRYNGCEYLGGFKNWQSVFVRHFSNA

Query:  AVELKTDSNVV
        AVELKTDSN+V
Subjt:  AVELKTDSNVV

XP_022141994.1 uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Momordica charantia]1.1e-2967.57Show/hide
Query:  MARGRGLSSAITRDTLFGVISLIRNVSYLSLLNIPTSFEQSSYGSCEHQRSNHIARSPQESTSVHSPHAFFFTRRRYNGCEYLGGFKNWQSVFVRHFSNA
        M RGR LS+A+TR++L G ISLIRNVS  SL NIP SF QS YGSCEHQRSNHI    QESTS+H P  F F+ RRYN  E+LGGFK WQS   RHF + 
Subjt:  MARGRGLSSAITRDTLFGVISLIRNVSYLSLLNIPTSFEQSSYGSCEHQRSNHIARSPQESTSVHSPHAFFFTRRRYNGCEYLGGFKNWQSVFVRHFSNA

Query:  AVELKTDSNVV
        AVELKTDSN+V
Subjt:  AVELKTDSNVV

XP_022963469.1 uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Cucurbita moschata]3.1e-2967.57Show/hide
Query:  MARGRGLSSAITRDTLFGVISLIRNVSYLSLLNIPTSFEQSSYGSCEHQRSNHIARSPQESTSVHSPHAFFFTRRRYNGCEYLGGFKNWQSVFVRHFSNA
        M+RG  LS AI+RD+L+G ISLIRNVS LSL NIP+SF QSSY SCE+Q SN I++S QESTS+  P  FFF  +RY+ CE LGGF+ WQS  VRHFSN 
Subjt:  MARGRGLSSAITRDTLFGVISLIRNVSYLSLLNIPTSFEQSSYGSCEHQRSNHIARSPQESTSVHSPHAFFFTRRRYNGCEYLGGFKNWQSVFVRHFSNA

Query:  AVELKTDSNVV
        AVELKTDSN+V
Subjt:  AVELKTDSNVV

XP_022967603.1 uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Cucurbita maxima]5.7e-3170.27Show/hide
Query:  MARGRGLSSAITRDTLFGVISLIRNVSYLSLLNIPTSFEQSSYGSCEHQRSNHIARSPQESTSVHSPHAFFFTRRRYNGCEYLGGFKNWQSVFVRHFSNA
        M+RG  LS AI+RD+L+G ISLIRNVS LSL NIPTSF QSSY SCEHQ SN I++S QESTS+  P  FFFT +RY+ CE LGGF+ WQS  VRHFSN 
Subjt:  MARGRGLSSAITRDTLFGVISLIRNVSYLSLLNIPTSFEQSSYGSCEHQRSNHIARSPQESTSVHSPHAFFFTRRRYNGCEYLGGFKNWQSVFVRHFSNA

Query:  AVELKTDSNVV
        AVELKTDSN+V
Subjt:  AVELKTDSNVV

TrEMBL top hitse value%identityAlignment
A0A0A0K5Y2 CRM domain-containing protein1.1e-2264.29Show/hide
Query:  MARGRGLS-SAITRDTLFGVISLIRNVSYLSLLNIPTSFEQSSYGSCEHQRSNHIARSPQESTSVHSPHAFFFTRRRYNGCEYLGGFKNWQSVFVRHFSN
        M R RGLS  A +R +LFG I LIRNVS LSLL+IPTSFEQSS+GS EHQ S+ I +S  ES S   P  F FT RRY+  E  GGFK WQS  VRHFSN
Subjt:  MARGRGLS-SAITRDTLFGVISLIRNVSYLSLLNIPTSFEQSSYGSCEHQRSNHIARSPQESTSVHSPHAFFFTRRRYNGCEYLGGFKNWQSVFVRHFSN

Query:  AAVELKTDSNVV
        A VELKTD+N V
Subjt:  AAVELKTDSNVV

A0A1S3C151 uncharacterized CRM domain-containing protein At3g25440, chloroplastic5.8e-2160.71Show/hide
Query:  MARGRGLS-SAITRDTLFGVISLIRNVSYLSLLNIPTSFEQSSYGSCEHQRSNHIARSPQESTSVHSPHAFFFTRRRYNGCEYLGGFKNWQSVFVRHFSN
        M R RG S   I+R +LFG  SLIRN S LSLL++PTSF QSS+GSCEHQ S+ I +S  ESTS   P     T  RY+  E  GGFK WQS  VRHFSN
Subjt:  MARGRGLS-SAITRDTLFGVISLIRNVSYLSLLNIPTSFEQSSYGSCEHQRSNHIARSPQESTSVHSPHAFFFTRRRYNGCEYLGGFKNWQSVFVRHFSN

Query:  AAVELKTDSNVV
        A VELKTDSN V
Subjt:  AAVELKTDSNVV

A0A6J1CKB1 uncharacterized CRM domain-containing protein At3g25440, chloroplastic5.2e-3067.57Show/hide
Query:  MARGRGLSSAITRDTLFGVISLIRNVSYLSLLNIPTSFEQSSYGSCEHQRSNHIARSPQESTSVHSPHAFFFTRRRYNGCEYLGGFKNWQSVFVRHFSNA
        M RGR LS+A+TR++L G ISLIRNVS  SL NIP SF QS YGSCEHQRSNHI    QESTS+H P  F F+ RRYN  E+LGGFK WQS   RHF + 
Subjt:  MARGRGLSSAITRDTLFGVISLIRNVSYLSLLNIPTSFEQSSYGSCEHQRSNHIARSPQESTSVHSPHAFFFTRRRYNGCEYLGGFKNWQSVFVRHFSNA

Query:  AVELKTDSNVV
        AVELKTDSN+V
Subjt:  AVELKTDSNVV

A0A6J1HK68 uncharacterized CRM domain-containing protein At3g25440, chloroplastic1.5e-2967.57Show/hide
Query:  MARGRGLSSAITRDTLFGVISLIRNVSYLSLLNIPTSFEQSSYGSCEHQRSNHIARSPQESTSVHSPHAFFFTRRRYNGCEYLGGFKNWQSVFVRHFSNA
        M+RG  LS AI+RD+L+G ISLIRNVS LSL NIP+SF QSSY SCE+Q SN I++S QESTS+  P  FFF  +RY+ CE LGGF+ WQS  VRHFSN 
Subjt:  MARGRGLSSAITRDTLFGVISLIRNVSYLSLLNIPTSFEQSSYGSCEHQRSNHIARSPQESTSVHSPHAFFFTRRRYNGCEYLGGFKNWQSVFVRHFSNA

Query:  AVELKTDSNVV
        AVELKTDSN+V
Subjt:  AVELKTDSNVV

A0A6J1HVJ0 uncharacterized CRM domain-containing protein At3g25440, chloroplastic2.8e-3170.27Show/hide
Query:  MARGRGLSSAITRDTLFGVISLIRNVSYLSLLNIPTSFEQSSYGSCEHQRSNHIARSPQESTSVHSPHAFFFTRRRYNGCEYLGGFKNWQSVFVRHFSNA
        M+RG  LS AI+RD+L+G ISLIRNVS LSL NIPTSF QSSY SCEHQ SN I++S QESTS+  P  FFFT +RY+ CE LGGF+ WQS  VRHFSN 
Subjt:  MARGRGLSSAITRDTLFGVISLIRNVSYLSLLNIPTSFEQSSYGSCEHQRSNHIARSPQESTSVHSPHAFFFTRRRYNGCEYLGGFKNWQSVFVRHFSNA

Query:  AVELKTDSNVV
        AVELKTDSN+V
Subjt:  AVELKTDSNVV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTCGCGGTCGCGGTCTATCGAGCGCCATTACAAGGGATACATTGTTTGGAGTCATTTCTCTGATCAGAAATGTGTCATATTTATCTTTATTGAACATACCCACGTC
ATTTGAGCAGTCCTCATATGGAAGTTGTGAGCATCAAAGAAGTAATCATATTGCAAGGTCTCCCCAGGAATCAACATCTGTACACTCTCCACATGCCTTCTTTTTCACTA
GGAGGAGATATAATGGGTGTGAGTACCTTGGTGGGTTTAAAAACTGGCAATCTGTTTTTGTTAGGCATTTTAGCAATGCAGCTGTGGAGCTGAAGACAGACAGCAATGTT
GTC
mRNA sequenceShow/hide mRNA sequence
ATGGCTCGCGGTCGCGGTCTATCGAGCGCCATTACAAGGGATACATTGTTTGGAGTCATTTCTCTGATCAGAAATGTGTCATATTTATCTTTATTGAACATACCCACGTC
ATTTGAGCAGTCCTCATATGGAAGTTGTGAGCATCAAAGAAGTAATCATATTGCAAGGTCTCCCCAGGAATCAACATCTGTACACTCTCCACATGCCTTCTTTTTCACTA
GGAGGAGATATAATGGGTGTGAGTACCTTGGTGGGTTTAAAAACTGGCAATCTGTTTTTGTTAGGCATTTTAGCAATGCAGCTGTGGAGCTGAAGACAGACAGCAATGTT
GTC
Protein sequenceShow/hide protein sequence
MARGRGLSSAITRDTLFGVISLIRNVSYLSLLNIPTSFEQSSYGSCEHQRSNHIARSPQESTSVHSPHAFFFTRRRYNGCEYLGGFKNWQSVFVRHFSNAAVELKTDSNV
V