; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg039852 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg039852
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRegulator of nonsense transcripts UPF2
Genome locationscaffold10:42284025..42286721
RNA-Seq ExpressionSpg039852
SyntenySpg039852
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6578740.1 Regulator of nonsense transcripts UPF2, partial [Cucurbita argyrosperma subsp. sororia]6.7e-0489.66Show/hide
Query:  ETVARQEEIKKSFEAKVALRQTNLNPERP
        ET ARQEEIKKSFEAK+ALRQ+NLNPERP
Subjt:  ETVARQEEIKKSFEAKVALRQTNLNPERP
TYK05736.1 regulator of nonsense transcripts UPF2 [Cucumis melo var. makuwa]4.6e-0593.33Show/hide
Query:  ETVARQEEIKKSFEAKVALRQTNLNPERPG
        ETVARQEEIKKSFEAK+ALRQ+NLNPERPG
Subjt:  ETVARQEEIKKSFEAKVALRQTNLNPERPG
XP_008463566.1 PREDICTED: LOW QUALITY PROTEIN: regulator of nonsense transcripts UPF2 [Cucumis melo]2.3e-0493.1Show/hide
Query:  ETVARQEEIKKSFEAKVALRQTNLNPERP
        ETVARQEEIKKSFEAK+ALRQ+NLNPERP
Subjt:  ETVARQEEIKKSFEAKVALRQTNLNPERP
XP_022133716.1 regulator of nonsense transcripts UPF2 [Momordica charantia]1.3e-0493.1Show/hide
Query:  ETVARQEEIKKSFEAKVALRQTNLNPERP
        ETVARQEEIKKSFEAK+ALRQ+NLNPERP
Subjt:  ETVARQEEIKKSFEAKVALRQTNLNPERP
XP_023550316.1 regulator of nonsense transcripts UPF2-like [Cucurbita pepo subsp. pepo]6.7e-0489.66Show/hide
Query:  ETVARQEEIKKSFEAKVALRQTNLNPERP
        ET ARQEEIKKSFEAK+ALRQ+NLNPERP
Subjt:  ETVARQEEIKKSFEAKVALRQTNLNPERP
TrEMBL top hitse value%identityAlignment
A0A0A0KS34 Uncharacterized protein3.2e-0489.66Show/hide
Query:  ETVARQEEIKKSFEAKVALRQTNLNPERP
        E+VARQEEIKKSFEAK+ALRQ+NLNPERP
Subjt:  ETVARQEEIKKSFEAKVALRQTNLNPERP
A0A1S3CJK4 LOW QUALITY PROTEIN: regulator of nonsense transcripts UPF21.1e-0493.1Show/hide
Query:  ETVARQEEIKKSFEAKVALRQTNLNPERP
        ETVARQEEIKKSFEAK+ALRQ+NLNPERP
Subjt:  ETVARQEEIKKSFEAKVALRQTNLNPERP
A0A5D3C5U7 Regulator of nonsense transcripts UPF22.2e-0593.33Show/hide
Query:  ETVARQEEIKKSFEAKVALRQTNLNPERPG
        ETVARQEEIKKSFEAK+ALRQ+NLNPERPG
Subjt:  ETVARQEEIKKSFEAKVALRQTNLNPERPG
A0A6J1BVY0 regulator of nonsense transcripts UPF26.5e-0593.1Show/hide
Query:  ETVARQEEIKKSFEAKVALRQTNLNPERP
        ETVARQEEIKKSFEAK+ALRQ+NLNPERP
Subjt:  ETVARQEEIKKSFEAKVALRQTNLNPERP
A0A6J1JX56 regulator of nonsense transcripts UPF2-like3.2e-0489.66Show/hide
Query:  ETVARQEEIKKSFEAKVALRQTNLNPERP
        ET ARQEEIKKSFEAK+ALRQ+NLNPERP
Subjt:  ETVARQEEIKKSFEAKVALRQTNLNPERP
SwissProt top hitse value%identityAlignment
F4IUX6 Regulator of nonsense transcripts UPF23.1e-0475.86Show/hide
Query:  ETVARQEEIKKSFEAKVALRQTNLNPERP
        E +AR EEIKKS EAK+ LRQ NLNPERP
Subjt:  ETVARQEEIKKSFEAKVALRQTNLNPERP
Arabidopsis top hitse value%identityAlignment
AT2G39260.1 binding;RNA binding2.2e-0575.86Show/hide
Query:  ETVARQEEIKKSFEAKVALRQTNLNPERP
        E +AR EEIKKS EAK+ LRQ NLNPERP
Subjt:  ETVARQEEIKKSFEAKVALRQTNLNPERP

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGACGAGTCGTAGACCGGGTCAATGCCAGTTGGGCCAGGGTCCAAACCGAAGCCCAACAAAGCGTTATAAAAAGCGGCCCAACCTGTGTCCGCGCGCATATTCTTC
CAACCCCTCGTCTCGGTTCTCAGTTCACAATTCCCACCGTCTCTCCGTCAGTGTTCCACTGTCGACGTTCACTCTCTCTCCACTTTCCGGCGGAACTGCAACAGAATCTT
CAGTCCTTGAGAATCGCTCCACCCTGACATGGACCATCATGAAGATGATGGCCGCCCAGGGGGTGAAAGTCAACCCAAGAGAGATGATGAGGTGCTTCGTCATAAATCAT
TGGATATGGCTAATCTATGGTTTGAAACTTCATCCTTGCATTCTTGCTTACCTGTACACCATGATTGAAACTGTTGCTCGTCAGGAAGAAATTAAAAAGTCATTCGAGGC
TAAAGTGGCTCTTCGTCAAACTAATTTGAATCCTGAGAGGCCTGGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGACGAGTCGTAGACCGGGTCAATGCCAGTTGGGCCAGGGTCCAAACCGAAGCCCAACAAAGCGTTATAAAAAGCGGCCCAACCTGTGTCCGCGCGCATATTCTTC
CAACCCCTCGTCTCGGTTCTCAGTTCACAATTCCCACCGTCTCTCCGTCAGTGTTCCACTGTCGACGTTCACTCTCTCTCCACTTTCCGGCGGAACTGCAACAGAATCTT
CAGTCCTTGAGAATCGCTCCACCCTGACATGGACCATCATGAAGATGATGGCCGCCCAGGGGGTGAAAGTCAACCCAAGAGAGATGATGAGGTGCTTCGTCATAAATCAT
TGGATATGGCTAATCTATGGTTTGAAACTTCATCCTTGCATTCTTGCTTACCTGTACACCATGATTGAAACTGTTGCTCGTCAGGAAGAAATTAAAAAGTCATTCGAGGC
TAAAGTGGCTCTTCGTCAAACTAATTTGAATCCTGAGAGGCCTGGTTAG
Protein sequenceShow/hide protein sequence
METSRRPGQCQLGQGPNRSPTKRYKKRPNLCPRAYSSNPSSRFSVHNSHRLSVSVPLSTFTLSPLSGGTATESSVLENRSTLTWTIMKMMAAQGVKVNPREMMRCFVINH
WIWLIYGLKLHPCILAYLYTMIETVARQEEIKKSFEAKVALRQTNLNPERPG