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Spg039857 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg039857
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Description40S ribosomal protein S23
Genome locationscaffold10:42229875..42231881
RNA-Seq ExpressionSpg039857
SyntenySpg039857
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR006032 - Ribosomal protein S12/S23
IPR012340 - Nucleic acid-binding, OB-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EOY18544.1 Ribosomal protein S12/S23 family protein isoform 2, partial [Theobroma cacao]4.0e-1867.47Show/hide
Query:  QRWADKAYKKSDLGNERKKARCSIISCKSDCARKDKLLRNCEAKQPNFAIRKGARVQLIKSGKKIAAFVPNDGCLNYMEEKVS
        QRWADKAYKKS+LGNE KK        K     K  +    EAKQPN AIRK ARVQLIK+GKKIAAFVPNDGCLNY+EE VS
Subjt:  QRWADKAYKKSDLGNERKKARCSIISCKSDCARKDKLLRNCEAKQPNFAIRKGARVQLIKSGKKIAAFVPNDGCLNYMEEKVS

KAG6702635.1 hypothetical protein I3842_07G045300 [Carya illinoinensis]4.0e-1867.47Show/hide
Query:  QRWADKAYKKSDLGNERKKARCSIISCKSDCARKDKLLRNCEAKQPNFAIRKGARVQLIKSGKKIAAFVPNDGCLNYMEEKVS
        QRWADK+YKKS L NE KK        K     K  +    EAKQPNFAIRK ARVQLIK+GKKIAAFVPNDGCLNY+EEKVS
Subjt:  QRWADKAYKKSDLGNERKKARCSIISCKSDCARKDKLLRNCEAKQPNFAIRKGARVQLIKSGKKIAAFVPNDGCLNYMEEKVS

KJB36649.1 hypothetical protein B456_006G168700 [Gossypium raimondii]4.0e-1867.47Show/hide
Query:  QRWADKAYKKSDLGNERKKARCSIISCKSDCARKDKLLRNCEAKQPNFAIRKGARVQLIKSGKKIAAFVPNDGCLNYMEEKVS
        QRWADKAYKKS+LGNE KK        K     K  +    EAKQPN AIRK ARVQLIK+GKKIAAFVPNDGCLNY+EE VS
Subjt:  QRWADKAYKKSDLGNERKKARCSIISCKSDCARKDKLLRNCEAKQPNFAIRKGARVQLIKSGKKIAAFVPNDGCLNYMEEKVS

MBA0579576.1 hypothetical protein [Gossypium raimondii]4.0e-1867.47Show/hide
Query:  QRWADKAYKKSDLGNERKKARCSIISCKSDCARKDKLLRNCEAKQPNFAIRKGARVQLIKSGKKIAAFVPNDGCLNYMEEKVS
        QRWADKAYKKS+LGNE KK        K     K  +    EAKQPN AIRK ARVQLIK+GKKIAAFVPNDGCLNY+EE VS
Subjt:  QRWADKAYKKSDLGNERKKARCSIISCKSDCARKDKLLRNCEAKQPNFAIRKGARVQLIKSGKKIAAFVPNDGCLNYMEEKVS

XP_039003020.1 40S ribosomal protein S23-like [Hibiscus syriacus]6.8e-1867.9Show/hide
Query:  GQRWADKAYKKSDLGNERKKARCSIISCKSDCARKDKLLRNCEAKQPNFAIRKGARVQLIKSGKKIAAFVPNDGCLNYMEE
        GQRWADKAYKKS+LGNE KK        K     K  +    EAKQPN AIRK ARVQLIK+GKKIAAFVPNDGCLNY+EE
Subjt:  GQRWADKAYKKSDLGNERKKARCSIISCKSDCARKDKLLRNCEAKQPNFAIRKGARVQLIKSGKKIAAFVPNDGCLNYMEE

TrEMBL top hitse value%identityAlignment
A0A061FUQ3 Ribosomal protein S12/S23 family protein isoform 2 (Fragment)1.9e-1867.47Show/hide
Query:  QRWADKAYKKSDLGNERKKARCSIISCKSDCARKDKLLRNCEAKQPNFAIRKGARVQLIKSGKKIAAFVPNDGCLNYMEEKVS
        QRWADKAYKKS+LGNE KK        K     K  +    EAKQPN AIRK ARVQLIK+GKKIAAFVPNDGCLNY+EE VS
Subjt:  QRWADKAYKKSDLGNERKKARCSIISCKSDCARKDKLLRNCEAKQPNFAIRKGARVQLIKSGKKIAAFVPNDGCLNYMEEKVS

A0A0D2RXP4 Uncharacterized protein1.9e-1867.47Show/hide
Query:  QRWADKAYKKSDLGNERKKARCSIISCKSDCARKDKLLRNCEAKQPNFAIRKGARVQLIKSGKKIAAFVPNDGCLNYMEEKVS
        QRWADKAYKKS+LGNE KK        K     K  +    EAKQPN AIRK ARVQLIK+GKKIAAFVPNDGCLNY+EE VS
Subjt:  QRWADKAYKKSDLGNERKKARCSIISCKSDCARKDKLLRNCEAKQPNFAIRKGARVQLIKSGKKIAAFVPNDGCLNYMEEKVS

A0A1D6NL35 40S ribosomal protein S23-24.3e-1866.27Show/hide
Query:  QRWADKAYKKSDLGNERKKARCSIISCKSDCARKDKLLRNCEAKQPNFAIRKGARVQLIKSGKKIAAFVPNDGCLNYMEEKVS
        QRWADKAYKKS LGNE KK        K     K       EAKQPNF IRK ARVQL+K+GKKIAAFVPNDGCLNY+EE VS
Subjt:  QRWADKAYKKSDLGNERKKARCSIISCKSDCARKDKLLRNCEAKQPNFAIRKGARVQLIKSGKKIAAFVPNDGCLNYMEEKVS

A0A6A3AC41 40S ribosomal protein S233.3e-1867.9Show/hide
Query:  GQRWADKAYKKSDLGNERKKARCSIISCKSDCARKDKLLRNCEAKQPNFAIRKGARVQLIKSGKKIAAFVPNDGCLNYMEE
        GQRWADKAYKKS+LGNE KK        K     K  +    EAKQPN AIRK ARVQLIK+GKKIAAFVPNDGCLNY+EE
Subjt:  GQRWADKAYKKSDLGNERKKARCSIISCKSDCARKDKLLRNCEAKQPNFAIRKGARVQLIKSGKKIAAFVPNDGCLNYMEE

A0A7J8NRM7 Uncharacterized protein1.9e-1867.47Show/hide
Query:  QRWADKAYKKSDLGNERKKARCSIISCKSDCARKDKLLRNCEAKQPNFAIRKGARVQLIKSGKKIAAFVPNDGCLNYMEEKVS
        QRWADKAYKKS+LGNE KK        K     K  +    EAKQPN AIRK ARVQLIK+GKKIAAFVPNDGCLNY+EE VS
Subjt:  QRWADKAYKKSDLGNERKKARCSIISCKSDCARKDKLLRNCEAKQPNFAIRKGARVQLIKSGKKIAAFVPNDGCLNYMEEKVS

SwissProt top hitse value%identityAlignment
P46297 40S ribosomal protein S232.2e-1966.25Show/hide
Query:  QRWADKAYKKSDLGNERKKARCSIISCKSDCARKDKLLRNCEAKQPNFAIRKGARVQLIKSGKKIAAFVPNDGCLNYMEE
        QRWADK+YKKS LGNE KK        K     K  +    EAKQPN AIRK ARVQLIK+GKKIAAFVPNDGCLNY+EE
Subjt:  QRWADKAYKKSDLGNERKKARCSIISCKSDCARKDKLLRNCEAKQPNFAIRKGARVQLIKSGKKIAAFVPNDGCLNYMEE

P49201 40S ribosomal protein S23-22.9e-1964.63Show/hide
Query:  MGQRWADKAYKKSDLGNERKKARCSIISCKSDCARKDKLLRNCEAKQPNFAIRKGARVQLIKSGKKIAAFVPNDGCLNYMEE
        + QRWADK YKKS LGNE KK        K     K  +    EAKQPN AIRK ARVQLIK+GKKIAAFVPNDGCLNY+EE
Subjt:  MGQRWADKAYKKSDLGNERKKARCSIISCKSDCARKDKLLRNCEAKQPNFAIRKGARVQLIKSGKKIAAFVPNDGCLNYMEE

P90707 40S ribosomal protein S233.6e-1457.5Show/hide
Query:  QRWADKAYKKSDLGNERKKARCSIISCKSDCARKDKLLRNCEAKQPNFAIRKGARVQLIKSGKKIAAFVPNDGCLNYMEE
        QRW DK YKK+ LG  R KA     +  +     +K+    EAKQPN AIRK  RVQLIK+GKKI AFVPNDGCLN++EE
Subjt:  QRWADKAYKKSDLGNERKKARCSIISCKSDCARKDKLLRNCEAKQPNFAIRKGARVQLIKSGKKIAAFVPNDGCLNYMEE

Q9M5Z9 40S ribosomal protein S232.2e-1966.25Show/hide
Query:  QRWADKAYKKSDLGNERKKARCSIISCKSDCARKDKLLRNCEAKQPNFAIRKGARVQLIKSGKKIAAFVPNDGCLNYMEE
        QRWADK+YKKS LGNE KK        K     K  +    EAKQPN AIRK ARVQLIK+GKKIAAFVPNDGCLNY+EE
Subjt:  QRWADKAYKKSDLGNERKKARCSIISCKSDCARKDKLLRNCEAKQPNFAIRKGARVQLIKSGKKIAAFVPNDGCLNYMEE

Q9SF35 40S ribosomal protein S23-11.9e-1865Show/hide
Query:  QRWADKAYKKSDLGNERKKARCSIISCKSDCARKDKLLRNCEAKQPNFAIRKGARVQLIKSGKKIAAFVPNDGCLNYMEE
        QRWADK YKKS+ GNE KK      +C S            EAKQPN AIRK ARVQLIK+GKKIAAFVPNDGCLNY+EE
Subjt:  QRWADKAYKKSDLGNERKKARCSIISCKSDCARKDKLLRNCEAKQPNFAIRKGARVQLIKSGKKIAAFVPNDGCLNYMEE

Arabidopsis top hitse value%identityAlignment
AT3G09680.1 Ribosomal protein S12/S23 family protein1.3e-1965Show/hide
Query:  QRWADKAYKKSDLGNERKKARCSIISCKSDCARKDKLLRNCEAKQPNFAIRKGARVQLIKSGKKIAAFVPNDGCLNYMEE
        QRWADK YKKS+ GNE KK      +C S            EAKQPN AIRK ARVQLIK+GKKIAAFVPNDGCLNY+EE
Subjt:  QRWADKAYKKSDLGNERKKARCSIISCKSDCARKDKLLRNCEAKQPNFAIRKGARVQLIKSGKKIAAFVPNDGCLNYMEE

AT5G02960.1 Ribosomal protein S12/S23 family protein2.0e-2064.63Show/hide
Query:  MGQRWADKAYKKSDLGNERKKARCSIISCKSDCARKDKLLRNCEAKQPNFAIRKGARVQLIKSGKKIAAFVPNDGCLNYMEE
        + QRWADK YKKS LGNE KK        K     K  +    EAKQPN AIRK ARVQLIK+GKKIAAFVPNDGCLNY+EE
Subjt:  MGQRWADKAYKKSDLGNERKKARCSIISCKSDCARKDKLLRNCEAKQPNFAIRKGARVQLIKSGKKIAAFVPNDGCLNYMEE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTCTTCTTAACATGGATATGTTTGCCTTTCTTTGTCTCTATCCGATTATCTGCATGGGGCAGAGGTGGGCAGATAAGGCGTATAAGAAATCTGATCTTGGTAATGA
GCGGAAAAAGGCCCGTTGCAGTATCATCTCATGCAAAAGCGATTGTGCTAGAAAAGATAAGTTATTGAGGAATTGTGAAGCCAAGCAGCCGAATTTTGCTATTAGGAAAG
GTGCTCGTGTTCAACTGATTAAAAGTGGGAAGAAGATTGCTGCTTTTGTACCTAATGATGGTTGCTTGAATTATATGGAGGAAAAGGTAAGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTTCTTCTTAACATGGATATGTTTGCCTTTCTTTGTCTCTATCCGATTATCTGCATGGGGCAGAGGTGGGCAGATAAGGCGTATAAGAAATCTGATCTTGGTAATGA
GCGGAAAAAGGCCCGTTGCAGTATCATCTCATGCAAAAGCGATTGTGCTAGAAAAGATAAGTTATTGAGGAATTGTGAAGCCAAGCAGCCGAATTTTGCTATTAGGAAAG
GTGCTCGTGTTCAACTGATTAAAAGTGGGAAGAAGATTGCTGCTTTTGTACCTAATGATGGTTGCTTGAATTATATGGAGGAAAAGGTAAGTTAA
Protein sequenceShow/hide protein sequence
MVLLNMDMFAFLCLYPIICMGQRWADKAYKKSDLGNERKKARCSIISCKSDCARKDKLLRNCEAKQPNFAIRKGARVQLIKSGKKIAAFVPNDGCLNYMEEKVS