CuGenDBv2

Gene ID	Spg039978
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	general transcription factor 3C polypeptide 6-like
Genome location	scaffold10:46485917..46490027
RNA-Seq Expression	Spg039978
Synteny	Spg039978
Gene Ontology terms	GO:0006383 - transcription by RNA polymerase III (biological process) GO:0000127 - transcription factor TFIIIC complex (cellular component) GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR019481 - Transcription factor TFIIIC, triple barrel domain IPR042771 - TFIIIC subunit GTF3C6-like

Homology

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GenBank top hits

e value

%identity

Alignment

XP_022133708.1 uncharacterized protein LOC111006225 [Momordica charantia]

7.3e-54

87.79

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Query:  MKRTTIDSVSDGEEEYVLLDLGDISLLDIPPNAPYVLSGLDTMNPVLTICDKIKMVGEYEETIGTCLTFAEEEVSVV--EEEVGPSETNRLTAEAVEPEQ
        M++TTID  SDGEE+YVLLDLGD+SLLDIPPNAPYVLSGLDTMNPVLTICDKIKMVGEYEETIGTCLTFAEEEVSVV  EEE GPSET   TAEAV P +
Subjt:  MKRTTIDSVSDGEEEYVLLDLGDISLLDIPPNAPYVLSGLDTMNPVLTICDKIKMVGEYEETIGTCLTFAEEEVSVV--EEEVGPSETNRLTAEAVEPEQ

Query:  TPRKELKPIASVHKILKFKLLPDSAVPNSTS
         PRKELKPIASVHKILKFKLLPDSAVPNSTS
Subjt:  TPRKELKPIASVHKILKFKLLPDSAVPNSTS

XP_022939121.1 uncharacterized protein LOC111445121, partial [Cucurbita moschata]

2.2e-50

79.1

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Query:  MKRTTIDSVSDGEEEYVLLDLGDISLLDIPPNAPYVLSGLDTMNPVLTICDKIKMVGEYEETIGTCLTFAEEEVSVVEEEVGPSETNRLTAEAVEPEQTP
        M++  IDS SDGEEEYVL+DLGD+SLLDIPPNAPYVLSGLDTMNP+LTICDKIKM+GEYEETIGTCLTFAEEEVS+VEEE  PSETNR + +AVEP Q P
Subjt:  MKRTTIDSVSDGEEEYVLLDLGDISLLDIPPNAPYVLSGLDTMNPVLTICDKIKMVGEYEETIGTCLTFAEEEVSVVEEEVGPSETNRLTAEAVEPEQTP

Query:  RKELKPIASVHKILKFKLLP-----DSAVPNSTS
        R++LKP+ASVHKILKFKLL      DSAVP+STS
Subjt:  RKELKPIASVHKILKFKLLP-----DSAVPNSTS

XP_022993830.1 uncharacterized protein LOC111489725 [Cucurbita maxima]

1.3e-50

80.92

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Query:  MKRTTIDSVSDGEEEYVLLDLGDISLLDIPPNAPYVLSGLDTMNPVLTICDKIKMVGEYEETIGTCLTFAEEEVSVVEEEVGPSETNRLTAEAVEPEQTP
        M++  IDS SDGEEEYVL+DLGD+SLLDIPPNAPYVLSGLDTMNP+LTICDKIKM+GEYEETIGTCLTFAEEEVS+VEEE  PS+TNR + +AVEP Q P
Subjt:  MKRTTIDSVSDGEEEYVLLDLGDISLLDIPPNAPYVLSGLDTMNPVLTICDKIKMVGEYEETIGTCLTFAEEEVSVVEEEVGPSETNRLTAEAVEPEQTP

Query:  RKELKPIASVHKILKFKLLP--DSAVPNSTS
        RK+LKP+ASVHKILKFKLL   DSAVP+STS
Subjt:  RKELKPIASVHKILKFKLLP--DSAVPNSTS

XP_023550663.1 uncharacterized protein LOC111808744 isoform X1 [Cucurbita pepo subsp. pepo]

5.8e-51

80.6

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Query:  MKRTTIDSVSDGEEEYVLLDLGDISLLDIPPNAPYVLSGLDTMNPVLTICDKIKMVGEYEETIGTCLTFAEEEVSVVEEEVGPSETNRLTAEAVEPEQTP
        M++  IDS SDGEEEYVLLDLGD+SLLDIPPNAPYVLSGLDTMNP+LTICDKIKM+GEYEETIGTCLTFAEEEVS+VEEE  PSETNR + +AVEP Q P
Subjt:  MKRTTIDSVSDGEEEYVLLDLGDISLLDIPPNAPYVLSGLDTMNPVLTICDKIKMVGEYEETIGTCLTFAEEEVSVVEEEVGPSETNRLTAEAVEPEQTP

Query:  RKELKPIASVHKILKFKLLP-----DSAVPNSTS
        RK+LKP+ASVHKILKFKLL      DSAVP+STS
Subjt:  RKELKPIASVHKILKFKLLP-----DSAVPNSTS

XP_038885696.1 uncharacterized protein LOC120075999 [Benincasa hispida]

2.9e-50

82.95

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Query:  MKRTTIDSVSDGEEEYVLLDLGDISLLDIPPNAPYVLSGLDTMNPVLTICDKIKMVGEYEETIGTCLTFAEEEVSVVEEEVGPSETNRLTAEAVEPEQTP
        M++ TIDS  D EEEYVLLDLGD+SLLDIPPNAPYVLSGLDTMNP+LTICDKIKM+GEYEETIGTCLTFAEEEV VVEEE  PSE+NR + EA EP+Q P
Subjt:  MKRTTIDSVSDGEEEYVLLDLGDISLLDIPPNAPYVLSGLDTMNPVLTICDKIKMVGEYEETIGTCLTFAEEEVSVVEEEVGPSETNRLTAEAVEPEQTP

Query:  RKELKPIASVHKILKFKLLPDSAVPNSTS
        RKELKP+ASVHKILKFKLL DSAVPNS S
Subjt:  RKELKPIASVHKILKFKLLPDSAVPNSTS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LML8 TFIIIC_sub6 domain-containing protein

2.1e-46

79.84

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Query:  MKRTTIDSVSDGEEEYVLLDLGDISLLDIPPNAPYVLSGLDTMNPVLTICDKIKMVGEYEETIGTCLTFAEEEVSVVEEEVGPSETNRLTAEAVEPEQTP
        M++ TIDS SD EEEYVLLDLGD+SLLDIPPNAPYVLSGLDTMNPVLTICDK KM+GEYEETIGTCLTFAEEEV VVEEE  PSET R + E VEPEQ  
Subjt:  MKRTTIDSVSDGEEEYVLLDLGDISLLDIPPNAPYVLSGLDTMNPVLTICDKIKMVGEYEETIGTCLTFAEEEVSVVEEEVGPSETNRLTAEAVEPEQTP

Query:  RKELKPIASVHKILKFKLLPDSAVPNSTS
        +KELK +A VHKILKFKLL DS VP+S S
Subjt:  RKELKPIASVHKILKFKLLPDSAVPNSTS

A0A1S4DTV8 general transcription factor 3C polypeptide 6-like

1.3e-45

78.29

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Query:  MKRTTIDSVSDGEEEYVLLDLGDISLLDIPPNAPYVLSGLDTMNPVLTICDKIKMVGEYEETIGTCLTFAEEEVSVVEEEVGPSETNRLTAEAVEPEQTP
        M++ TIDS S+ EEEYVLLDLGD+SLLDIPPNAPYVLSGLDTMNPVLTICDK KM+GEYEETIGTCLTFAEEEV VVEEE  PSETN  + EA EP+Q  
Subjt:  MKRTTIDSVSDGEEEYVLLDLGDISLLDIPPNAPYVLSGLDTMNPVLTICDKIKMVGEYEETIGTCLTFAEEEVSVVEEEVGPSETNRLTAEAVEPEQTP

Query:  RKELKPIASVHKILKFKLLPDSAVPNSTS
        RKELK  A VHKILKFKLL DS VP+  S
Subjt:  RKELKPIASVHKILKFKLLPDSAVPNSTS

A0A6J1BZW5 uncharacterized protein LOC111006225

3.5e-54

87.79

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Query:  MKRTTIDSVSDGEEEYVLLDLGDISLLDIPPNAPYVLSGLDTMNPVLTICDKIKMVGEYEETIGTCLTFAEEEVSVV--EEEVGPSETNRLTAEAVEPEQ
        M++TTID  SDGEE+YVLLDLGD+SLLDIPPNAPYVLSGLDTMNPVLTICDKIKMVGEYEETIGTCLTFAEEEVSVV  EEE GPSET   TAEAV P +
Subjt:  MKRTTIDSVSDGEEEYVLLDLGDISLLDIPPNAPYVLSGLDTMNPVLTICDKIKMVGEYEETIGTCLTFAEEEVSVV--EEEVGPSETNRLTAEAVEPEQ

Query:  TPRKELKPIASVHKILKFKLLPDSAVPNSTS
         PRKELKPIASVHKILKFKLLPDSAVPNSTS
Subjt:  TPRKELKPIASVHKILKFKLLPDSAVPNSTS

A0A6J1FF13 uncharacterized protein LOC111445121

1.1e-50

79.1

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Query:  MKRTTIDSVSDGEEEYVLLDLGDISLLDIPPNAPYVLSGLDTMNPVLTICDKIKMVGEYEETIGTCLTFAEEEVSVVEEEVGPSETNRLTAEAVEPEQTP
        M++  IDS SDGEEEYVL+DLGD+SLLDIPPNAPYVLSGLDTMNP+LTICDKIKM+GEYEETIGTCLTFAEEEVS+VEEE  PSETNR + +AVEP Q P
Subjt:  MKRTTIDSVSDGEEEYVLLDLGDISLLDIPPNAPYVLSGLDTMNPVLTICDKIKMVGEYEETIGTCLTFAEEEVSVVEEEVGPSETNRLTAEAVEPEQTP

Query:  RKELKPIASVHKILKFKLLP-----DSAVPNSTS
        R++LKP+ASVHKILKFKLL      DSAVP+STS
Subjt:  RKELKPIASVHKILKFKLLP-----DSAVPNSTS

A0A6J1JTZ1 uncharacterized protein LOC111489725

6.2e-51

80.92

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Query:  MKRTTIDSVSDGEEEYVLLDLGDISLLDIPPNAPYVLSGLDTMNPVLTICDKIKMVGEYEETIGTCLTFAEEEVSVVEEEVGPSETNRLTAEAVEPEQTP
        M++  IDS SDGEEEYVL+DLGD+SLLDIPPNAPYVLSGLDTMNP+LTICDKIKM+GEYEETIGTCLTFAEEEVS+VEEE  PS+TNR + +AVEP Q P
Subjt:  MKRTTIDSVSDGEEEYVLLDLGDISLLDIPPNAPYVLSGLDTMNPVLTICDKIKMVGEYEETIGTCLTFAEEEVSVVEEEVGPSETNRLTAEAVEPEQTP

Query:  RKELKPIASVHKILKFKLLP--DSAVPNSTS
        RK+LKP+ASVHKILKFKLL   DSAVP+STS
Subjt:  RKELKPIASVHKILKFKLLP--DSAVPNSTS

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G80745.1 Transcription factor TFIIIC, tau55-related protein

3.6e-19

47.27

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Query:  EEEYVLLDLGDISL-LDIPPNAPYVLSGLDTMNPVLTICDKIKMVGEYEETIGTCLTFAEEEVSVVEEEVGPSETNRLTAEAVEPEQTPRKE-LKPIASV
        E+E+V++DL D+S  +DIP +APY LSGLDT+NPVLTI  K+K+VGEY  TIGTCL F+++                         QTP+K+ ++P+A +
Subjt:  EEEYVLLDLGDISL-LDIPPNAPYVLSGLDTMNPVLTICDKIKMVGEYEETIGTCLTFAEEEVSVVEEEVGPSETNRLTAEAVEPEQTPRKE-LKPIASV

Query:  HKILKFKLLP
        HKILKF+L P
Subjt:  HKILKFKLLP

AT3G15420.1 Transcription factor TFIIIC, tau55-related protein

1.1e-20

52.78

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Query:  EEEYVLLDLGDISL-LDIPPNAPYVLSGLDTMNPVLTICDKIKMVGEYEETIGTCLTFAEEEVSVVEEEVGPSETNRLTAEAVEPEQTPRKE-LKPIASV
        EEE+V++DL ++S  ++IP +APY LSGLDT+NPVLTI  KIK+VGEY ETIGTCL F+E      +EEV  SE            Q P K+ ++P+A +
Subjt:  EEEYVLLDLGDISL-LDIPPNAPYVLSGLDTMNPVLTICDKIKMVGEYEETIGTCLTFAEEEVSVVEEEVGPSETNRLTAEAVEPEQTPRKE-LKPIASV

Query:  HKILKFKL
        HKILKF+L
Subjt:  HKILKFKL

Sequences

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CDS sequence

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ATGAAGAGAACTACAATTGATTCTGTCTCTGATGGCGAGGAAGAATATGTATTGCTTGATCTTGGCGATATATCGCTGCTTGACATTCCACCCAATGCTCCATATGTTCT
ATCTGGTTTGGACACCATGAATCCAGTGTTGACTATATGTGACAAAATTAAGATGGTTGGAGAGTACGAAGAAACAATAGGCACATGTCTTACCTTCGCAGAAGAAGAAG
TCTCTGTGGTTGAAGAAGAAGTTGGGCCATCTGAAACAAATCGTCTCACAGCAGAAGCAGTTGAACCAGAACAAACTCCAAGGAAGGAGTTGAAACCCATTGCTTCTGTA
CATAAGATCCTTAAATTTAAATTGTTGCCTGATTCTGCTGTTCCAAACTCAACATCTTAG

mRNA sequence

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Protein sequence

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MKRTTIDSVSDGEEEYVLLDLGDISLLDIPPNAPYVLSGLDTMNPVLTICDKIKMVGEYEETIGTCLTFAEEEVSVVEEEVGPSETNRLTAEAVEPEQTPRKELKPIASV
HKILKFKLLPDSAVPNSTS

Spg039978 (gene) of Sponge gourd (cylindrica) v1 genome