CuGenDBv2

Gene ID	Spg040055
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	nuclear pore complex protein NUP160
Genome location	scaffold10:25029045..25030612
RNA-Seq Expression	Spg040055
Synteny	Spg040055
Gene Ontology terms	GO:0006913 - nucleocytoplasmic transport (biological process) GO:0033036 - macromolecule localization (biological process) GO:0043170 - macromolecule metabolic process (biological process) GO:0071702 - organic substance transport (biological process) GO:0071705 - nitrogen compound transport (biological process) GO:0005643 - nuclear pore (cellular component)
InterPro domains	IPR021717 - Nucleoporin Nup120/160

Homology

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GenBank top hits

e value

%identity

Alignment

XP_022928856.1 nuclear pore complex protein NUP160 [Cucurbita moschata]

8.4e-18

90.57

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Query:  KVKLAGAVQDMVISEVHGRQFLFVLHSDGVLQVWDLSCHSRVLNHSMNIATLA
        +VKLAGAV DMVISEV GRQFLFVLHSDGVL+VWDLSCHSRVLNHSMNIAT+A
Subjt:  KVKLAGAVQDMVISEVHGRQFLFVLHSDGVLQVWDLSCHSRVLNHSMNIATLA

XP_038907016.1 nuclear pore complex protein NUP160 isoform X1 [Benincasa hispida]

1.3e-18

94.34

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Query:  KVKLAGAVQDMVISEVHGRQFLFVLHSDGVLQVWDLSCHSRVLNHSMNIATLA
        +VKLAGAVQDMVISEV GRQFLFVLHSDGVL+VWDLSCHSRVLNHSMNIATLA
Subjt:  KVKLAGAVQDMVISEVHGRQFLFVLHSDGVLQVWDLSCHSRVLNHSMNIATLA

XP_038907017.1 nuclear pore complex protein NUP160 isoform X2 [Benincasa hispida]

1.3e-18

94.34

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Query:  KVKLAGAVQDMVISEVHGRQFLFVLHSDGVLQVWDLSCHSRVLNHSMNIATLA
        +VKLAGAVQDMVISEV GRQFLFVLHSDGVL+VWDLSCHSRVLNHSMNIATLA
Subjt:  KVKLAGAVQDMVISEVHGRQFLFVLHSDGVLQVWDLSCHSRVLNHSMNIATLA

XP_038907018.1 nuclear pore complex protein NUP160 isoform X3 [Benincasa hispida]

1.3e-18

94.34

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Query:  KVKLAGAVQDMVISEVHGRQFLFVLHSDGVLQVWDLSCHSRVLNHSMNIATLA
        +VKLAGAVQDMVISEV GRQFLFVLHSDGVL+VWDLSCHSRVLNHSMNIATLA
Subjt:  KVKLAGAVQDMVISEVHGRQFLFVLHSDGVLQVWDLSCHSRVLNHSMNIATLA

XP_038907019.1 nuclear pore complex protein NUP160 isoform X4 [Benincasa hispida]

1.3e-18

94.34

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Query:  KVKLAGAVQDMVISEVHGRQFLFVLHSDGVLQVWDLSCHSRVLNHSMNIATLA
        +VKLAGAVQDMVISEV GRQFLFVLHSDGVL+VWDLSCHSRVLNHSMNIATLA
Subjt:  KVKLAGAVQDMVISEVHGRQFLFVLHSDGVLQVWDLSCHSRVLNHSMNIATLA

TrEMBL top hits

e value

%identity

Alignment

A0A1S3C4Y2 nuclear pore complex protein NUP160 isoform X2

6.9e-18

90.57

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Query:  KVKLAGAVQDMVISEVHGRQFLFVLHSDGVLQVWDLSCHSRVLNHSMNIATLA
        +VKLAGAVQDMVISEV GRQFLFVLHSDG L+VWDLSCHSRVLNHSMNIAT+A
Subjt:  KVKLAGAVQDMVISEVHGRQFLFVLHSDGVLQVWDLSCHSRVLNHSMNIATLA

A0A1S3C516 nuclear pore complex protein NUP160 isoform X5

6.9e-18

90.57

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Query:  KVKLAGAVQDMVISEVHGRQFLFVLHSDGVLQVWDLSCHSRVLNHSMNIATLA
        +VKLAGAVQDMVISEV GRQFLFVLHSDG L+VWDLSCHSRVLNHSMNIAT+A
Subjt:  KVKLAGAVQDMVISEVHGRQFLFVLHSDGVLQVWDLSCHSRVLNHSMNIATLA

A0A5D3B8G5 Nuclear pore complex protein NUP160 isoform X5

6.9e-18

90.57

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Query:  KVKLAGAVQDMVISEVHGRQFLFVLHSDGVLQVWDLSCHSRVLNHSMNIATLA
        +VKLAGAVQDMVISEV GRQFLFVLHSDG L+VWDLSCHSRVLNHSMNIAT+A
Subjt:  KVKLAGAVQDMVISEVHGRQFLFVLHSDGVLQVWDLSCHSRVLNHSMNIATLA

A0A6J1ELG7 nuclear pore complex protein NUP160

4.0e-18

90.57

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Query:  KVKLAGAVQDMVISEVHGRQFLFVLHSDGVLQVWDLSCHSRVLNHSMNIATLA
        +VKLAGAV DMVISEV GRQFLFVLHSDGVL+VWDLSCHSRVLNHSMNIAT+A
Subjt:  KVKLAGAVQDMVISEVHGRQFLFVLHSDGVLQVWDLSCHSRVLNHSMNIATLA

A0A6J1HYU1 nuclear pore complex protein NUP160

4.0e-18

90.57

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Query:  KVKLAGAVQDMVISEVHGRQFLFVLHSDGVLQVWDLSCHSRVLNHSMNIATLA
        +VKLAGAV DMVISEV GRQFLFVLHSDGVL+VWDLSCHSRVLNHSMNIAT+A
Subjt:  KVKLAGAVQDMVISEVHGRQFLFVLHSDGVLQVWDLSCHSRVLNHSMNIATLA

SwissProt top hits

e value

%identity

Alignment

Q9C811 Nuclear pore complex protein NUP160

4.3e-09

53.85

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Query:  LAGAVQDMVISEVHGRQFLFVLHSDGVLQVWDLSCHSRVLNHSMNIATLAGI
        +  AVQD+ ISEVHGR +L VLH+DG L+VWD+  +SRVL  S+    L G+
Subjt:  LAGAVQDMVISEVHGRQFLFVLHSDGVLQVWDLSCHSRVLNHSMNIATLAGI

Arabidopsis top hits

e value

%identity

Alignment

AT1G33410.1 SUPPRESSOR OF AUXIN RESISTANCE1

3.1e-10

53.85

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Query:  LAGAVQDMVISEVHGRQFLFVLHSDGVLQVWDLSCHSRVLNHSMNIATLAGI
        +  AVQD+ ISEVHGR +L VLH+DG L+VWD+  +SRVL  S+    L G+
Subjt:  LAGAVQDMVISEVHGRQFLFVLHSDGVLQVWDLSCHSRVLNHSMNIATLAGI

AT1G33410.2 SUPPRESSOR OF AUXIN RESISTANCE1

3.1e-10

53.85

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Query:  LAGAVQDMVISEVHGRQFLFVLHSDGVLQVWDLSCHSRVLNHSMNIATLAGI
        +  AVQD+ ISEVHGR +L VLH+DG L+VWD+  +SRVL  S+    L G+
Subjt:  LAGAVQDMVISEVHGRQFLFVLHSDGVLQVWDLSCHSRVLNHSMNIATLAGI

Sequences

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CDS sequence

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ATGAGAGAGAAAAATCCAACGCTCAGATACCAACTTGATGCACTCAAGGTCAAGTTGGCAGGAGCCGTGCAAGATATGGTAATATCTGAGGTCCATGGAAGACAATTTCT
GTTTGTTCTTCATTCTGATGGAGTCTTACAAGTGTGGGATCTTTCATGTCATAGTAGGGTACTTAATCACTCCATGAATATTGCAACTTTGGCAGGTATTGAGATGGATA
AAGAATGA

mRNA sequence

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Protein sequence

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MREKNPTLRYQLDALKVKLAGAVQDMVISEVHGRQFLFVLHSDGVLQVWDLSCHSRVLNHSMNIATLAGIEMDKE

Spg040055 (gene) of Sponge gourd (cylindrica) v1 genome