; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0000016 (gene) of Snake gourd v1 genome

Gene IDTan0000016
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionCCHC-type domain-containing protein
Genome locationLG02:39600148..39619981
RNA-Seq ExpressionTan0000016
SyntenyTan0000016
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0005488 - binding (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]6.9e-1236.25Show/hide
Query:  PRGNRSSVRDKVLPKAISYRVHTGHFLLSTLSVLRDHNAVVSIGRAPLRQRRWNKRW--------------------LYWVCPTQRRLSYSTGSS-----
        PRGNR S++ + + K +        F LSTLSVL D++AVVS G+APLRQRRW  R                     +  + PT    S S  S+     
Subjt:  PRGNRSSVRDKVLPKAISYRVHTGHFLLSTLSVLRDHNAVVSIGRAPLRQRRWNKRW--------------------LYWVCPTQRRLSYSTGSS-----

Query:  --------------------TSLIFCTWV---NNVFWLHAIFRAKLAGSTGGGVTTWYQS
                              +++  W+   ++V WLHAIFRAK AG  GGGVTTWYQS
Subjt:  --------------------TSLIFCTWV---NNVFWLHAIFRAKLAGSTGGGVTTWYQS

KAA0065516.1 uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa]3.4e-1140.41Show/hide
Query:  PRGNRSSVRDKVLPKAISYRVHTGHFLLSTLSVLRDHNAVVSIG------------RAPLRQRRWNKRWLYWVCPTQRR---------------------
        PRGNRSS++   L K +        F LSTLSVLRD++AVVS G            RAPL  RR +KRWLYW CPT RR                     
Subjt:  PRGNRSSVRDKVLPKAISYRVHTGHFLLSTLSVLRDHNAVVSIG------------RAPLRQRRWNKRWLYWVCPTQRR---------------------

Query:  ---LSYSTGSSTSLIFCTWV---NNVFWLHAIFRAKLAGSTGGGVT
           L  S  SS S      +   ++V WLH +FRAK  G  GG VT
Subjt:  ---LSYSTGSSTSLIFCTWV---NNVFWLHAIFRAKLAGSTGGGVT

TYJ96574.1 uncharacterized protein E5676_scaffold791G00040 [Cucumis melo var. makuwa]2.6e-1135.15Show/hide
Query:  MVGKLIEFPTTFVKNSPRGNRSSVRDKVLPKAISYRVHTG--------------HFLLSTLSVLRDHNAVVSIG---------------RAPLRQRRWNK
        +V KLI++PTTF+K  P GNR S++   L K +S    T                F LSTLSVLRD+NA V +                + P+  R W+ 
Subjt:  MVGKLIEFPTTFVKNSPRGNRSSVRDKVLPKAISYRVHTG--------------HFLLSTLSVLRDHNAVVSIG---------------RAPLRQRRWNK

Query:  RWLYWVCPTQRRLSYSTGSSTSLIFCTWV--------NNVFWLHAIFRAKLAGSTGGGVTTWYQS
            ++     RL Y      +  +  W         ++V+WLHA+FRAK  G  GGGVTTWYQS
Subjt:  RWLYWVCPTQRRLSYSTGSSTSLIFCTWV--------NNVFWLHAIFRAKLAGSTGGGVTTWYQS

TYJ98800.1 uncharacterized protein E5676_scaffold1625G00140 [Cucumis melo var. makuwa]3.4e-1140.41Show/hide
Query:  PRGNRSSVRDKVLPKAISYRVHTGHFLLSTLSVLRDHNAVVSIG------------RAPLRQRRWNKRWLYWVCPTQRR---------------------
        PRGNRSS++   L K +        F LSTLSVLRD++AVVS G            RAPL  RR +KRWLYW CPT RR                     
Subjt:  PRGNRSSVRDKVLPKAISYRVHTGHFLLSTLSVLRDHNAVVSIG------------RAPLRQRRWNKRWLYWVCPTQRR---------------------

Query:  ---LSYSTGSSTSLIFCTWV---NNVFWLHAIFRAKLAGSTGGGVT
           L  S  SS S      +   ++V WLH +FRAK  G  GG VT
Subjt:  ---LSYSTGSSTSLIFCTWV---NNVFWLHAIFRAKLAGSTGGGVT

TYK03091.1 reverse transcriptase [Cucumis melo var. makuwa]6.9e-1236.25Show/hide
Query:  PRGNRSSVRDKVLPKAISYRVHTGHFLLSTLSVLRDHNAVVSIGRAPLRQRRWNKRW--------------------LYWVCPTQRRLSYSTGSS-----
        PRGNR S++ + + K +        F LSTLSVL D++AVVS G+APLRQRRW  R                     +  + PT    S S  S+     
Subjt:  PRGNRSSVRDKVLPKAISYRVHTGHFLLSTLSVLRDHNAVVSIGRAPLRQRRWNKRW--------------------LYWVCPTQRRLSYSTGSS-----

Query:  --------------------TSLIFCTWV---NNVFWLHAIFRAKLAGSTGGGVTTWYQS
                              +++  W+   ++V WLHAIFRAK AG  GGGVTTWYQS
Subjt:  --------------------TSLIFCTWV---NNVFWLHAIFRAKLAGSTGGGVTTWYQS

TrEMBL top hitse value%identityAlignment
A0A5A7T7M6 Reverse transcriptase3.3e-1236.25Show/hide
Query:  PRGNRSSVRDKVLPKAISYRVHTGHFLLSTLSVLRDHNAVVSIGRAPLRQRRWNKRW--------------------LYWVCPTQRRLSYSTGSS-----
        PRGNR S++ + + K +        F LSTLSVL D++AVVS G+APLRQRRW  R                     +  + PT    S S  S+     
Subjt:  PRGNRSSVRDKVLPKAISYRVHTGHFLLSTLSVLRDHNAVVSIGRAPLRQRRWNKRW--------------------LYWVCPTQRRLSYSTGSS-----

Query:  --------------------TSLIFCTWV---NNVFWLHAIFRAKLAGSTGGGVTTWYQS
                              +++  W+   ++V WLHAIFRAK AG  GGGVTTWYQS
Subjt:  --------------------TSLIFCTWV---NNVFWLHAIFRAKLAGSTGGGVTTWYQS

A0A5A7VGQ5 Uncharacterized protein1.7e-1140.41Show/hide
Query:  PRGNRSSVRDKVLPKAISYRVHTGHFLLSTLSVLRDHNAVVSIG------------RAPLRQRRWNKRWLYWVCPTQRR---------------------
        PRGNRSS++   L K +        F LSTLSVLRD++AVVS G            RAPL  RR +KRWLYW CPT RR                     
Subjt:  PRGNRSSVRDKVLPKAISYRVHTGHFLLSTLSVLRDHNAVVSIG------------RAPLRQRRWNKRWLYWVCPTQRR---------------------

Query:  ---LSYSTGSSTSLIFCTWV---NNVFWLHAIFRAKLAGSTGGGVT
           L  S  SS S      +   ++V WLH +FRAK  G  GG VT
Subjt:  ---LSYSTGSSTSLIFCTWV---NNVFWLHAIFRAKLAGSTGGGVT

A0A5D3BC77 CCHC-type domain-containing protein1.3e-1135.15Show/hide
Query:  MVGKLIEFPTTFVKNSPRGNRSSVRDKVLPKAISYRVHTG--------------HFLLSTLSVLRDHNAVVSIG---------------RAPLRQRRWNK
        +V KLI++PTTF+K  P GNR S++   L K +S    T                F LSTLSVLRD+NA V +                + P+  R W+ 
Subjt:  MVGKLIEFPTTFVKNSPRGNRSSVRDKVLPKAISYRVHTG--------------HFLLSTLSVLRDHNAVVSIG---------------RAPLRQRRWNK

Query:  RWLYWVCPTQRRLSYSTGSSTSLIFCTWV--------NNVFWLHAIFRAKLAGSTGGGVTTWYQS
            ++     RL Y      +  +  W         ++V+WLHA+FRAK  G  GGGVTTWYQS
Subjt:  RWLYWVCPTQRRLSYSTGSSTSLIFCTWV--------NNVFWLHAIFRAKLAGSTGGGVTTWYQS

A0A5D3BG85 Uncharacterized protein1.7e-1140.41Show/hide
Query:  PRGNRSSVRDKVLPKAISYRVHTGHFLLSTLSVLRDHNAVVSIG------------RAPLRQRRWNKRWLYWVCPTQRR---------------------
        PRGNRSS++   L K +        F LSTLSVLRD++AVVS G            RAPL  RR +KRWLYW CPT RR                     
Subjt:  PRGNRSSVRDKVLPKAISYRVHTGHFLLSTLSVLRDHNAVVSIG------------RAPLRQRRWNKRWLYWVCPTQRR---------------------

Query:  ---LSYSTGSSTSLIFCTWV---NNVFWLHAIFRAKLAGSTGGGVT
           L  S  SS S      +   ++V WLH +FRAK  G  GG VT
Subjt:  ---LSYSTGSSTSLIFCTWV---NNVFWLHAIFRAKLAGSTGGGVT

A0A5D3BTP3 Reverse transcriptase3.3e-1236.25Show/hide
Query:  PRGNRSSVRDKVLPKAISYRVHTGHFLLSTLSVLRDHNAVVSIGRAPLRQRRWNKRW--------------------LYWVCPTQRRLSYSTGSS-----
        PRGNR S++ + + K +        F LSTLSVL D++AVVS G+APLRQRRW  R                     +  + PT    S S  S+     
Subjt:  PRGNRSSVRDKVLPKAISYRVHTGHFLLSTLSVLRDHNAVVSIGRAPLRQRRWNKRW--------------------LYWVCPTQRRLSYSTGSS-----

Query:  --------------------TSLIFCTWV---NNVFWLHAIFRAKLAGSTGGGVTTWYQS
                              +++  W+   ++V WLHAIFRAK AG  GGGVTTWYQS
Subjt:  --------------------TSLIFCTWV---NNVFWLHAIFRAKLAGSTGGGVTTWYQS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTGGAAAGCTTATTGAATTTCCTACAACTTTCGTGAAGAATTCGCCAAGAGGAAATAGGTCGAGTGTACGAGACAAGGTTCTACCCAAGGCTATATCGTACCGTGT
CCACACAGGTCATTTTCTGTTGTCGACGTTGAGTGTACTCCGTGACCACAATGCTGTCGTGAGTATTGGGCGGGCCCCACTACGACAAAGACGATGGAATAAACGTTGGT
TGTACTGGGTGTGTCCTACACAACGTAGATTGTCATATTCTACTGGAAGCTCCACGAGCTTGATATTTTGTACGTGGGTAAACAATGTTTTTTGGCTTCACGCGATCTTC
CGGGCTAAGTTAGCAGGTAGTACGGGAGGGGGTGTGACAACTTGGTATCAGAGCAGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTTGGAAAGCTTATTGAATTTCCTACAACTTTCGTGAAGAATTCGCCAAGAGGAAATAGGTCGAGTGTACGAGACAAGGTTCTACCCAAGGCTATATCGTACCGTGT
CCACACAGGTCATTTTCTGTTGTCGACGTTGAGTGTACTCCGTGACCACAATGCTGTCGTGAGTATTGGGCGGGCCCCACTACGACAAAGACGATGGAATAAACGTTGGT
TGTACTGGGTGTGTCCTACACAACGTAGATTGTCATATTCTACTGGAAGCTCCACGAGCTTGATATTTTGTACGTGGGTAAACAATGTTTTTTGGCTTCACGCGATCTTC
CGGGCTAAGTTAGCAGGTAGTACGGGAGGGGGTGTGACAACTTGGTATCAGAGCAGTTAG
Protein sequenceShow/hide protein sequence
MVGKLIEFPTTFVKNSPRGNRSSVRDKVLPKAISYRVHTGHFLLSTLSVLRDHNAVVSIGRAPLRQRRWNKRWLYWVCPTQRRLSYSTGSSTSLIFCTWVNNVFWLHAIF
RAKLAGSTGGGVTTWYQSS