; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0000101 (gene) of Snake gourd v1 genome

Gene IDTan0000101
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRNA-binding protein 2
Genome locationLG01:79515505..79516581
RNA-Seq ExpressionTan0000101
SyntenyTan0000101
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8647163.1 hypothetical protein Csa_018814 [Cucumis sativus]2.7e-4663.1Show/hide
Query:  MHNYLASDDRGGPRAVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTLGEMGMGRPVA------NRMPGPSIPDPIV------------PNGRNIEYENHLF
        MHNYL SDDRGGPR+VKDTQTIGSAYDRYLQSVQLSSFTSGEVPT GEMGMGRPVA      NRMPGP +PDPIV            PNGRN+EY NHL 
Subjt:  MHNYLASDDRGGPRAVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTLGEMGMGRPVA------NRMPGPSIPDPIV------------PNGRNIEYENHLF

Query:  VDSINKHGLETLPLPPDASNTF--------------IYIFRPFVGYKQLKIV---------NPLILCF
        VDS+++ G ET+PLPPDASNT                +IFRPFVGYK+L++V         +PLILCF
Subjt:  VDSINKHGLETLPLPPDASNTF--------------IYIFRPFVGYKQLKIV---------NPLILCF

XP_008441534.1 PREDICTED: RNA-binding protein 2 [Cucumis melo]5.4e-4764.29Show/hide
Query:  MHNYLASDDRGGPRAVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTLGEMGMGRPVA------NRMPGPSIPDPIV------------PNGRNIEYENHLF
        MHNYLASDDRGGPR+VKDTQTIGSAYDRYLQSVQLSSFTSGEVPT GEMGMGRPVA      NRMPGP +PDPIV            PNGRNIEY NHL 
Subjt:  MHNYLASDDRGGPRAVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTLGEMGMGRPVA------NRMPGPSIPDPIV------------PNGRNIEYENHLF

Query:  VDSINKHGLETLPLPPDASNTF--------------IYIFRPFVGYKQLKIV---------NPLILCF
        VDS+++ G ET+PLPPDASNT                +IFRPFVGYK+L++V         +PLILCF
Subjt:  VDSINKHGLETLPLPPDASNTF--------------IYIFRPFVGYKQLKIV---------NPLILCF

XP_031743537.1 RNA-binding protein 2 isoform X3 [Cucumis sativus]2.7e-4663.1Show/hide
Query:  MHNYLASDDRGGPRAVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTLGEMGMGRPVA------NRMPGPSIPDPIV------------PNGRNIEYENHLF
        MHNYL SDDRGGPR+VKDTQTIGSAYDRYLQSVQLSSFTSGEVPT GEMGMGRPVA      NRMPGP +PDPIV            PNGRN+EY NHL 
Subjt:  MHNYLASDDRGGPRAVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTLGEMGMGRPVA------NRMPGPSIPDPIV------------PNGRNIEYENHLF

Query:  VDSINKHGLETLPLPPDASNTF--------------IYIFRPFVGYKQLKIV---------NPLILCF
        VDS+++ G ET+PLPPDASNT                +IFRPFVGYK+L++V         +PLILCF
Subjt:  VDSINKHGLETLPLPPDASNTF--------------IYIFRPFVGYKQLKIV---------NPLILCF

XP_031743540.1 RNA-binding protein 2 isoform X6 [Cucumis sativus]2.7e-4663.1Show/hide
Query:  MHNYLASDDRGGPRAVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTLGEMGMGRPVA------NRMPGPSIPDPIV------------PNGRNIEYENHLF
        MHNYL SDDRGGPR+VKDTQTIGSAYDRYLQSVQLSSFTSGEVPT GEMGMGRPVA      NRMPGP +PDPIV            PNGRN+EY NHL 
Subjt:  MHNYLASDDRGGPRAVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTLGEMGMGRPVA------NRMPGPSIPDPIV------------PNGRNIEYENHLF

Query:  VDSINKHGLETLPLPPDASNTF--------------IYIFRPFVGYKQLKIV---------NPLILCF
        VDS+++ G ET+PLPPDASNT                +IFRPFVGYK+L++V         +PLILCF
Subjt:  VDSINKHGLETLPLPPDASNTF--------------IYIFRPFVGYKQLKIV---------NPLILCF

XP_031743541.1 RNA-binding protein 2 isoform X7 [Cucumis sativus]2.7e-4663.1Show/hide
Query:  MHNYLASDDRGGPRAVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTLGEMGMGRPVA------NRMPGPSIPDPIV------------PNGRNIEYENHLF
        MHNYL SDDRGGPR+VKDTQTIGSAYDRYLQSVQLSSFTSGEVPT GEMGMGRPVA      NRMPGP +PDPIV            PNGRN+EY NHL 
Subjt:  MHNYLASDDRGGPRAVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTLGEMGMGRPVA------NRMPGPSIPDPIV------------PNGRNIEYENHLF

Query:  VDSINKHGLETLPLPPDASNTF--------------IYIFRPFVGYKQLKIV---------NPLILCF
        VDS+++ G ET+PLPPDASNT                +IFRPFVGYK+L++V         +PLILCF
Subjt:  VDSINKHGLETLPLPPDASNTF--------------IYIFRPFVGYKQLKIV---------NPLILCF

TrEMBL top hitse value%identityAlignment
A0A0A0KCN5 RRM domain-containing protein1.3e-4663.1Show/hide
Query:  MHNYLASDDRGGPRAVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTLGEMGMGRPVA------NRMPGPSIPDPIV------------PNGRNIEYENHLF
        MHNYL SDDRGGPR+VKDTQTIGSAYDRYLQSVQLSSFTSGEVPT GEMGMGRPVA      NRMPGP +PDPIV            PNGRN+EY NHL 
Subjt:  MHNYLASDDRGGPRAVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTLGEMGMGRPVA------NRMPGPSIPDPIV------------PNGRNIEYENHLF

Query:  VDSINKHGLETLPLPPDASNTF--------------IYIFRPFVGYKQLKIV---------NPLILCF
        VDS+++ G ET+PLPPDASNT                +IFRPFVGYK+L++V         +PLILCF
Subjt:  VDSINKHGLETLPLPPDASNTF--------------IYIFRPFVGYKQLKIV---------NPLILCF

A0A1S3B4F0 RNA-binding protein 22.6e-4764.29Show/hide
Query:  MHNYLASDDRGGPRAVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTLGEMGMGRPVA------NRMPGPSIPDPIV------------PNGRNIEYENHLF
        MHNYLASDDRGGPR+VKDTQTIGSAYDRYLQSVQLSSFTSGEVPT GEMGMGRPVA      NRMPGP +PDPIV            PNGRNIEY NHL 
Subjt:  MHNYLASDDRGGPRAVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTLGEMGMGRPVA------NRMPGPSIPDPIV------------PNGRNIEYENHLF

Query:  VDSINKHGLETLPLPPDASNTF--------------IYIFRPFVGYKQLKIV---------NPLILCF
        VDS+++ G ET+PLPPDASNT                +IFRPFVGYK+L++V         +PLILCF
Subjt:  VDSINKHGLETLPLPPDASNTF--------------IYIFRPFVGYKQLKIV---------NPLILCF

A0A6J1CKA2 RNA-binding protein 2-like6.5e-4662.5Show/hide
Query:  MHNYLASDDRGGPRAVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTLGEMGMGRPVAN------RMPGPSIPDPIV------------PNGRNIEYENHLF
        MHNYL SDDRGGPRAVKDTQTIGSAYDRYLQSVQLSSF SGEVPT G+MGM RPVAN      RMPGPSIPDP+V            PNGRNIEY NHL 
Subjt:  MHNYLASDDRGGPRAVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTLGEMGMGRPVAN------RMPGPSIPDPIV------------PNGRNIEYENHLF

Query:  VDSINKHGLETLPLPPDASNTF--------------IYIFRPFVGYKQLKIV---------NPLILCF
        +DS+ + G ET+PLPPDASNT                +IFRPFVGYK+L++V         +PLILCF
Subjt:  VDSINKHGLETLPLPPDASNTF--------------IYIFRPFVGYKQLKIV---------NPLILCF

A0A6J1E3U2 RNA-binding protein 2-like8.4e-4660.23Show/hide
Query:  MHNYLASDDRGGPRAVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTLGEMGMGRPVAN------RMPGPSIPDPIV------------PNGRNIEYENHLF
        MHN+LASDDR GP AVKDTQ IGSAYDRYLQSVQLSS  SGEVPTLGEMGMGRP+AN      RMPGPSIPDP+V            PNGRNIEY NHL 
Subjt:  MHNYLASDDRGGPRAVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTLGEMGMGRPVAN------RMPGPSIPDPIV------------PNGRNIEYENHLF

Query:  VDSINKHGLETLPLPPDASNTF--------------IYIFRPFVGYKQLKIV---------NPLILCFSENLFALC
        V+S+N+ G ET+PLPPDASNT                +IFRPFVGYK+L++V         +PLILCF +   A C
Subjt:  VDSINKHGLETLPLPPDASNTF--------------IYIFRPFVGYKQLKIV---------NPLILCFSENLFALC

A0A6J1JRD4 RNA-binding protein 2-like3.2e-4559.66Show/hide
Query:  MHNYLASDDRGGPRAVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTLGEMGMGRPVAN------RMPGPSIPDPIV------------PNGRNIEYENHLF
        MH++L+SDDR GP AVKDTQ IGSAYDRYLQSVQLSS  SGEVPTLGEMGMGRP+AN      RMPGPSIPDP+V            PNGRNIEY NHL 
Subjt:  MHNYLASDDRGGPRAVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTLGEMGMGRPVAN------RMPGPSIPDPIV------------PNGRNIEYENHLF

Query:  VDSINKHGLETLPLPPDASNTF--------------IYIFRPFVGYKQLKIV---------NPLILCFSENLFALC
        V+SIN+ G ET+PLPPDASNT                +IFRPFVGYK+L++V         +PLILCF +   A C
Subjt:  VDSINKHGLETLPLPPDASNTF--------------IYIFRPFVGYKQLKIV---------NPLILCFSENLFALC

SwissProt top hitse value%identityAlignment
A1A6K6 Nuclear speckle RNA-binding protein A3.9e-0835.21Show/hide
Query:  VKDTQTIGSAYDRYLQSVQLSSFTSGEVPTLGEMGMG-----RPVANRM--PGPSIPDPIVPNGRNIEYENHLFVDSINKHGLETLPLPPDASNTF----
        V DT+TIGSAYDRYLQSVQ     S  +   G  G G     + + + M   G  +P    PNG  I ++    V   N        LP DASNT     
Subjt:  VKDTQTIGSAYDRYLQSVQLSSFTSGEVPTLGEMGMG-----RPVANRM--PGPSIPDPIVPNGRNIEYENHLFVDSINKHGLETLPLPPDASNTF----

Query:  ----------IYIFRPFVGYKQLKIV---------NPLILCF
                   +IFRPFVGY+++++V         +P++LCF
Subjt:  ----------IYIFRPFVGYKQLKIV---------NPLILCF

F4HWF9 Nuclear speckle RNA-binding protein B1.1e-2140.49Show/hide
Query:  MHNYLASD-DRGGPRAVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTLGEMGMGRP-VANRMPGP-----------SIPDPIVPNGRNIEYENHLFVDSIN
        MH+YL+ D DRG P +VKDT++IGSAYDRYLQS+Q     S E      +GM R   +N MPGP           S+P    PNGR++ +     +DS+ 
Subjt:  MHNYLASD-DRGGPRAVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTLGEMGMGRP-VANRMPGP-----------SIPDPIVPNGRNIEYENHLFVDSIN

Query:  KHGLETLPLPPDASNTFI--------------YIFRPFVGYKQLKIV---------NPLILCF
        + G E  PLPPD SNT                +IFRPFVGY+++++V         +P +LCF
Subjt:  KHGLETLPLPPDASNTFI--------------YIFRPFVGYKQLKIV---------NPLILCF

G7ID19 RNA-binding protein 24.8e-2237.2Show/hide
Query:  MHNYLASDDRGGPRAVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTLGEMGMGRPVANRMPGPSIPDP--------------IVPNGRNIEYENHLFVDSI
        +HNY+A ++  G + + DT+ +GSAYDR+LQS  L+SF SGE   +G +G  R V   +PG S+ DP              +  NGR++ +   L +D++
Subjt:  MHNYLASDDRGGPRAVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTLGEMGMGRPVANRMPGPSIPDP--------------IVPNGRNIEYENHLFVDSI

Query:  NKHGLETLPLPPDASNTF--------------IYIFRPFVGYKQLKIV---------NPLILCF
        ++ G ET+PLP DAS+T                +IFRPFVGY+++++V         +PLILCF
Subjt:  NKHGLETLPLPPDASNTF--------------IYIFRPFVGYKQLKIV---------NPLILCF

Q8H0P8 RNA-binding protein 12.2e-2240.12Show/hide
Query:  MHNYLASDDRGGPRAVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTLGEMGMGRPVANRMPGPSIPDP-------------IVPNGRNIEYENHLFVDSIN
        MH     +DR G   VKD++TIGSAYDRYLQ  Q+ SFTSGE  T+G +G+ R +   +P  S+ DP             + PNGR + Y     +D ++
Subjt:  MHNYLASDDRGGPRAVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTLGEMGMGRPVANRMPGPSIPDP-------------IVPNGRNIEYENHLFVDSIN

Query:  KHGLETLPLPPDASNTF--------------IYIFRPFVGYKQLKIV--------NPLILCF
        +HG E   LPPDAS T                +IFRPFVGY+++++V        +PLILCF
Subjt:  KHGLETLPLPPDASNTF--------------IYIFRPFVGYKQLKIV--------NPLILCF

Arabidopsis top hitse value%identityAlignment
AT1G21320.1 nucleotide binding;nucleic acid binding7.6e-2340.49Show/hide
Query:  MHNYLASD-DRGGPRAVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTLGEMGMGRP-VANRMPGP-----------SIPDPIVPNGRNIEYENHLFVDSIN
        MH+YL+ D DRG P +VKDT++IGSAYDRYLQS+Q     S E      +GM R   +N MPGP           S+P    PNGR++ +     +DS+ 
Subjt:  MHNYLASD-DRGGPRAVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTLGEMGMGRP-VANRMPGP-----------SIPDPIVPNGRNIEYENHLFVDSIN

Query:  KHGLETLPLPPDASNTFI--------------YIFRPFVGYKQLKIV---------NPLILCF
        + G E  PLPPD SNT                +IFRPFVGY+++++V         +P +LCF
Subjt:  KHGLETLPLPPDASNTFI--------------YIFRPFVGYKQLKIV---------NPLILCF

AT1G21320.2 nucleotide binding;nucleic acid binding7.6e-2340.49Show/hide
Query:  MHNYLASD-DRGGPRAVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTLGEMGMGRP-VANRMPGP-----------SIPDPIVPNGRNIEYENHLFVDSIN
        MH+YL+ D DRG P +VKDT++IGSAYDRYLQS+Q     S E      +GM R   +N MPGP           S+P    PNGR++ +     +DS+ 
Subjt:  MHNYLASD-DRGGPRAVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTLGEMGMGRP-VANRMPGP-----------SIPDPIVPNGRNIEYENHLFVDSIN

Query:  KHGLETLPLPPDASNTFI--------------YIFRPFVGYKQLKIV---------NPLILCF
        + G E  PLPPD SNT                +IFRPFVGY+++++V         +P +LCF
Subjt:  KHGLETLPLPPDASNTFI--------------YIFRPFVGYKQLKIV---------NPLILCF

AT1G76940.1 RNA-binding (RRM/RBD/RNP motifs) family protein2.8e-0935.21Show/hide
Query:  VKDTQTIGSAYDRYLQSVQLSSFTSGEVPTLGEMGMG-----RPVANRM--PGPSIPDPIVPNGRNIEYENHLFVDSINKHGLETLPLPPDASNTF----
        V DT+TIGSAYDRYLQSVQ     S  +   G  G G     + + + M   G  +P    PNG  I ++    V   N        LP DASNT     
Subjt:  VKDTQTIGSAYDRYLQSVQLSSFTSGEVPTLGEMGMG-----RPVANRM--PGPSIPDPIVPNGRNIEYENHLFVDSINKHGLETLPLPPDASNTF----

Query:  ----------IYIFRPFVGYKQLKIV---------NPLILCF
                   +IFRPFVGY+++++V         +P++LCF
Subjt:  ----------IYIFRPFVGYKQLKIV---------NPLILCF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCACAATTATCTAGCAAGTGATGATCGTGGTGGTCCTCGGGCTGTGAAAGATACACAAACAATTGGATCTGCATATGATCGTTATCTCCAAAGTGTTCAACTTTCTTC
TTTTACTTCTGGAGAAGTACCTACCCTTGGGGAAATGGGTATGGGAAGGCCTGTTGCAAACAGAATGCCTGGGCCTTCAATTCCTGATCCTATTGTACCAAATGGTCGAA
ATATTGAGTATGAGAATCATCTTTTTGTAGACTCGATAAACAAACACGGACTTGAAACTTTGCCTCTTCCTCCTGATGCCTCCAACACTTTTATATATATTTTCCGCCCC
TTTGTGGGGTATAAACAATTGAAAATTGTGAACCCTCTTATATTATGTTTTTCAGAAAACTTATTTGCTTTATGTCCAGGTCCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGCACAATTATCTAGCAAGTGATGATCGTGGTGGTCCTCGGGCTGTGAAAGATACACAAACAATTGGATCTGCATATGATCGTTATCTCCAAAGTGTTCAACTTTCTTC
TTTTACTTCTGGAGAAGTACCTACCCTTGGGGAAATGGGTATGGGAAGGCCTGTTGCAAACAGAATGCCTGGGCCTTCAATTCCTGATCCTATTGTACCAAATGGTCGAA
ATATTGAGTATGAGAATCATCTTTTTGTAGACTCGATAAACAAACACGGACTTGAAACTTTGCCTCTTCCTCCTGATGCCTCCAACACTTTTATATATATTTTCCGCCCC
TTTGTGGGGTATAAACAATTGAAAATTGTGAACCCTCTTATATTATGTTTTTCAGAAAACTTATTTGCTTTATGTCCAGGTCCTTAG
Protein sequenceShow/hide protein sequence
MHNYLASDDRGGPRAVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTLGEMGMGRPVANRMPGPSIPDPIVPNGRNIEYENHLFVDSINKHGLETLPLPPDASNTFIYIFRP
FVGYKQLKIVNPLILCFSENLFALCPGP