CuGenDBv2

Gene ID	Tan0000103
Organism	Trichosanthes anguina (Snake gourd v1)
Description	DNA-directed RNA polymerase subunit beta
Genome location	LG02:92155616..92155960
RNA-Seq Expression	Tan0000103
Synteny	Tan0000103
Gene Ontology terms	GO:0006351 - transcription, DNA-templated (biological process) GO:0009561 - megagametogenesis (biological process) GO:0005736 - RNA polymerase I complex (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0003677 - DNA binding (molecular function) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function) GO:0032549 - ribonucleoside binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAE8647278.1 hypothetical protein Csa_003919, partial [Cucumis sativus]

2.4e-22

85.29

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Query:  MVVKFPENQDYEALRELFRHHIESFDHLVDAGLETLLNSIKPVEIYDSFTNKKLRNILLMILIFFFFV
        MVVKF EN+DYEALRELFRHHIESFDHLVDAGLETL+NSIKPVEIYDSFTNKKLRNIL+M L    F+
Subjt:  MVVKFPENQDYEALRELFRHHIESFDHLVDAGLETLLNSIKPVEIYDSFTNKKLRNILLMILIFFFFV

KAG6585275.1 DNA-directed RNA polymerase I subunit 2, partial [Cucurbita argyrosperma subsp. sororia]

9.9e-21

94.55

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Query:  MVVKFPENQDYEALRELFRHHIESFDHLVDAGLETLLNSIKPVEIYDSFTNKKLR
        MVVKF ENQDYEALRELFRHHIESFDHLVDAGLETL+NSIKPVEIYDSFTN+KLR
Subjt:  MVVKFPENQDYEALRELFRHHIESFDHLVDAGLETLLNSIKPVEIYDSFTNKKLR

KAG7020194.1 DNA-directed RNA polymerase I subunit 2 [Cucurbita argyrosperma subsp. argyrosperma]

9.9e-21

94.55

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Query:  MVVKFPENQDYEALRELFRHHIESFDHLVDAGLETLLNSIKPVEIYDSFTNKKLR
        MVVKF ENQDYEALRELFRHHIESFDHLVDAGLETL+NSIKPVEIYDSFTN+KLR
Subjt:  MVVKFPENQDYEALRELFRHHIESFDHLVDAGLETLLNSIKPVEIYDSFTNKKLR

XP_004146776.1 DNA-directed RNA polymerase I subunit 2 [Cucumis sativus]

1.3e-20

94.55

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Query:  MVVKFPENQDYEALRELFRHHIESFDHLVDAGLETLLNSIKPVEIYDSFTNKKLR
        MVVKF EN+DYEALRELFRHHIESFDHLVDAGLETL+NSIKPVEIYDSFTNKKLR
Subjt:  MVVKFPENQDYEALRELFRHHIESFDHLVDAGLETLLNSIKPVEIYDSFTNKKLR

XP_008445376.1 PREDICTED: DNA-directed RNA polymerase I subunit 2 [Cucumis melo]

9.9e-21

94.55

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Query:  MVVKFPENQDYEALRELFRHHIESFDHLVDAGLETLLNSIKPVEIYDSFTNKKLR
        MVVKF EN+DYEALRELFRHHIESFDHLVDAGLETL+NSIKPVEIYDSFTNKKLR
Subjt:  MVVKFPENQDYEALRELFRHHIESFDHLVDAGLETLLNSIKPVEIYDSFTNKKLR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KFX3 Uncharacterized protein

2.6e-27

65.79

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Query:  MVVKFPENQDYEALRELFRHHIESFDHLVDAGLETLLNSIKPVEIYDSFTNKKLRNILLMIL-----------------------IFFFFVGLISAACLL
        MVVKF EN+DYEALRELFRHHIESFDHLVDAGLETL+NSIKPVEIYDSFTNKKLRNIL+M L                         FF  GLIS+ACLL
Subjt:  MVVKFPENQDYEALRELFRHHIESFDHLVDAGLETLLNSIKPVEIYDSFTNKKLRNILLMIL-----------------------IFFFFVGLISAACLL

Query:  PSPLAGYFGLLSLN
         S LA YF  +SLN
Subjt:  PSPLAGYFGLLSLN

A0A1S3BCJ8 DNA-directed RNA polymerase subunit beta

4.8e-21

94.55

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Query:  MVVKFPENQDYEALRELFRHHIESFDHLVDAGLETLLNSIKPVEIYDSFTNKKLR
        MVVKF EN+DYEALRELFRHHIESFDHLVDAGLETL+NSIKPVEIYDSFTNKKLR
Subjt:  MVVKFPENQDYEALRELFRHHIESFDHLVDAGLETLLNSIKPVEIYDSFTNKKLR

A0A6J1BRB2 DNA-directed RNA polymerase subunit beta

3.1e-20

90.91

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Query:  MVVKFPENQDYEALRELFRHHIESFDHLVDAGLETLLNSIKPVEIYDSFTNKKLR
        MVVKF EN DYEALRELFRHHIESFDHLVDAGLET+LNS+KPVE+YDSFTNKKLR
Subjt:  MVVKFPENQDYEALRELFRHHIESFDHLVDAGLETLLNSIKPVEIYDSFTNKKLR

A0A6J1GI72 DNA-directed RNA polymerase subunit beta

1.1e-20

94.55

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Query:  MVVKFPENQDYEALRELFRHHIESFDHLVDAGLETLLNSIKPVEIYDSFTNKKLR
        MVVKF ENQDYEALRELFRHHIESFDHLVDAGLETL+NSIKPVEIYDSFTN+KLR
Subjt:  MVVKFPENQDYEALRELFRHHIESFDHLVDAGLETLLNSIKPVEIYDSFTNKKLR

A0A6J1KKK5 DNA-directed RNA polymerase subunit beta

4.1e-20

90.91

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Query:  MVVKFPENQDYEALRELFRHHIESFDHLVDAGLETLLNSIKPVEIYDSFTNKKLR
        MVVKF ENQDYEALRELFRHHIES+DHLVDAGLETL+NSIKPVEIYDSFT++KLR
Subjt:  MVVKFPENQDYEALRELFRHHIESFDHLVDAGLETLLNSIKPVEIYDSFTNKKLR

SwissProt top hits

e value

%identity

Alignment

F4I366 DNA-directed RNA polymerase I subunit 2

9.4e-06

42.37

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Query:  PENQDYEALRELFRHHIESFDHLVDAGLETLLNSIKPVEIYDSFTNKKLRNILLMILIF
        P  +D++ L  L  HHIESFD++   GL+ + N IKPV +YD  T  +L   L   L+F
Subjt:  PENQDYEALRELFRHHIESFDHLVDAGLETLLNSIKPVEIYDSFTNKKLRNILLMILIF

Arabidopsis top hits

e value

%identity

Alignment

AT1G29940.1 nuclear RNA polymerase A2

6.6e-07

42.37

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Query:  PENQDYEALRELFRHHIESFDHLVDAGLETLLNSIKPVEIYDSFTNKKLRNILLMILIF
        P  +D++ L  L  HHIESFD++   GL+ + N IKPV +YD  T  +L   L   L+F
Subjt:  PENQDYEALRELFRHHIESFDHLVDAGLETLLNSIKPVEIYDSFTNKKLRNILLMILIF

Sequences

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CDS sequence

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ATGGTGGTGAAATTTCCCGAGAACCAAGACTATGAGGCGCTGCGCGAGCTGTTCAGACACCATATAGAATCGTTTGATCACCTCGTCGATGCGGGATTGGAGACGCTTTT
GAACAGCATCAAACCCGTGGAAATTTACGACTCCTTCACCAACAAAAAGCTGAGAAATATCCTACTTATGATTCTTATTTTTTTTTTTTTTGTGGGTTTAATTTCTGCCG
CATGTTTATTGCCTTCTCCTCTTGCTGGTTACTTCGGACTTCTCTCTTTAAACTGCTGA

mRNA sequence

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Protein sequence

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MVVKFPENQDYEALRELFRHHIESFDHLVDAGLETLLNSIKPVEIYDSFTNKKLRNILLMILIFFFFVGLISAACLLPSPLAGYFGLLSLNC

Tan0000103 (gene) of Snake gourd v1 genome