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Tan0000109 (gene) of Snake gourd v1 genome

Gene IDTan0000109
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRibosome biogenesis NEP1-like protein
Genome locationLG06:18911206..18911996
RNA-Seq ExpressionTan0000109
SyntenyTan0000109
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN33694.1 hypothetical protein [Cucumis melo subsp. melo]2.5e-5178.08Show/hide
Query:  MEGKRRLASSTTSASGVENNAANSSSSKSGGSSGESEYMKSEYAPIYIVMGFVGVALTIATHTAKQQLMHSPVVNFSKKKRESVPEVEDPDTVINSADKF
        ++G RR ASSTT+ S    NA++SSSS S G SG SEYMK EYAPIYIVMG V V ++IATHTAKQQL+HSP+VN SKKKRES+PEVEDPDTVI SADKF
Subjt:  MEGKRRLASSTTSASGVENNAANSSSSKSGGSSGESEYMKSEYAPIYIVMGFVGVALTIATHTAKQQLMHSPVVNFSKKKRESVPEVEDPDTVINSADKF

Query:  INKSFLRKVAHIQDDTNTLTDPVHPDPFTRPRNAETLKTAGVNPAR
        INKSFLRKVAHIQDDT TL DPVH DPFTRPRNAETLKTAGV+P R
Subjt:  INKSFLRKVAHIQDDTNTLTDPVHPDPFTRPRNAETLKTAGVNPAR

KAA0039866.1 putative Ribosome biogenesis protein NEP1-like [Cucumis melo var. makuwa]1.0e-5278.77Show/hide
Query:  MEGKRRLASSTTSASGVENNAANSSSSKSGGSSGESEYMKSEYAPIYIVMGFVGVALTIATHTAKQQLMHSPVVNFSKKKRESVPEVEDPDTVINSADKF
        ++G RR ASSTT+ S   N +++SSSS S G SGESEYMK EYAPIYIVMG V V ++IATHTAKQQL+HSP+VN SKKKRES+PEVEDPDTVI SADKF
Subjt:  MEGKRRLASSTTSASGVENNAANSSSSKSGGSSGESEYMKSEYAPIYIVMGFVGVALTIATHTAKQQLMHSPVVNFSKKKRESVPEVEDPDTVINSADKF

Query:  INKSFLRKVAHIQDDTNTLTDPVHPDPFTRPRNAETLKTAGVNPAR
        INKSFLRKVAHIQDDT TL DPVHPDPFTRPRNAETLKTAGV+P R
Subjt:  INKSFLRKVAHIQDDTNTLTDPVHPDPFTRPRNAETLKTAGVNPAR

XP_004140656.2 uncharacterized protein LOC101206372 [Cucumis sativus]2.2e-5573.17Show/hide
Query:  FRPSLTNNVWKSML--RTMEGKRRLASSTTSASGVENNAANSSSSKSGGSSGESEYMKSEYAPIYIVMGFVGVALTIATHTAKQQLMHSPVVNFSKKKRE
        FR SL N +WKSML    ++G RR +SSTT+ S      A+S SS S G SG SEYMK EYAPIYIVMG V V ++IATHTAKQQL+HSP+VN SKKKRE
Subjt:  FRPSLTNNVWKSML--RTMEGKRRLASSTTSASGVENNAANSSSSKSGGSSGESEYMKSEYAPIYIVMGFVGVALTIATHTAKQQLMHSPVVNFSKKKRE

Query:  SVPEVEDPDTVINSADKFINKSFLRKVAHIQDDTNTLTDPVHPDPFTRPRNAETLKTAGVNPAR
        S+PEVEDPDTVI SADKFINKSFLRKVAHIQ DT TL+DPVHPDPFTRPRNAETLKTAG++P R
Subjt:  SVPEVEDPDTVINSADKFINKSFLRKVAHIQDDTNTLTDPVHPDPFTRPRNAETLKTAGVNPAR

XP_008459927.1 PREDICTED: uncharacterized protein LOC103498899 [Cucumis melo]1.3e-5575.61Show/hide
Query:  FRPSLTNNVWKSML--RTMEGKRRLASSTTSASGVENNAANSSSSKSGGSSGESEYMKSEYAPIYIVMGFVGVALTIATHTAKQQLMHSPVVNFSKKKRE
        FR SL N +WKSML    ++G RR ASSTT+ S    NA++SSSS S G SG SEYMK EYAPIYIVMG V V ++IATHTAKQQL+HSP+VN SKKKRE
Subjt:  FRPSLTNNVWKSML--RTMEGKRRLASSTTSASGVENNAANSSSSKSGGSSGESEYMKSEYAPIYIVMGFVGVALTIATHTAKQQLMHSPVVNFSKKKRE

Query:  SVPEVEDPDTVINSADKFINKSFLRKVAHIQDDTNTLTDPVHPDPFTRPRNAETLKTAGVNPAR
        S+PEVEDPDTVI SADKFINKSFLRKVAHIQDDT TL DPVH DPFTRPRNAETLKTAGV+P R
Subjt:  SVPEVEDPDTVINSADKFINKSFLRKVAHIQDDTNTLTDPVHPDPFTRPRNAETLKTAGVNPAR

XP_038906484.1 uncharacterized protein LOC120092464 [Benincasa hispida]2.9e-5572.46Show/hide
Query:  FRPSLTNNVWKSML--RTMEGKRRLASSTT--SASGVEN-NAANSSSSKSGGSSGESEYMKSEYAPIYIVMGFVGVALTIATHTAKQQLMHSPVVNFSKK
        F  SLTN VWK+ML    ++GKRRLASSTT  +A+ ++  ++++SSSS S G S  SEYMK EYAPIYIV+G V VA++I THTAKQQL+HSPVVNFSKK
Subjt:  FRPSLTNNVWKSML--RTMEGKRRLASSTT--SASGVEN-NAANSSSSKSGGSSGESEYMKSEYAPIYIVMGFVGVALTIATHTAKQQLMHSPVVNFSKK

Query:  KRESVPEVEDPDTVINSADKFINKSFLRKVAHIQDDTNTLTDPVHPDPFTRPRNAETLKTAGVNPAR
        KRES+PEV+DPDT+INSA+KFINKSFLRKVAHIQ+DT TL DPVHP+PFTRPRNAETLKTAGV+P R
Subjt:  KRESVPEVEDPDTVINSADKFINKSFLRKVAHIQDDTNTLTDPVHPDPFTRPRNAETLKTAGVNPAR

TrEMBL top hitse value%identityAlignment
A0A0A0KC39 Uncharacterized protein1.1e-5573.17Show/hide
Query:  FRPSLTNNVWKSML--RTMEGKRRLASSTTSASGVENNAANSSSSKSGGSSGESEYMKSEYAPIYIVMGFVGVALTIATHTAKQQLMHSPVVNFSKKKRE
        FR SL N +WKSML    ++G RR +SSTT+ S      A+S SS S G SG SEYMK EYAPIYIVMG V V ++IATHTAKQQL+HSP+VN SKKKRE
Subjt:  FRPSLTNNVWKSML--RTMEGKRRLASSTTSASGVENNAANSSSSKSGGSSGESEYMKSEYAPIYIVMGFVGVALTIATHTAKQQLMHSPVVNFSKKKRE

Query:  SVPEVEDPDTVINSADKFINKSFLRKVAHIQDDTNTLTDPVHPDPFTRPRNAETLKTAGVNPAR
        S+PEVEDPDTVI SADKFINKSFLRKVAHIQ DT TL+DPVHPDPFTRPRNAETLKTAG++P R
Subjt:  SVPEVEDPDTVINSADKFINKSFLRKVAHIQDDTNTLTDPVHPDPFTRPRNAETLKTAGVNPAR

A0A1S3CBE5 uncharacterized protein LOC1034988996.3e-5675.61Show/hide
Query:  FRPSLTNNVWKSML--RTMEGKRRLASSTTSASGVENNAANSSSSKSGGSSGESEYMKSEYAPIYIVMGFVGVALTIATHTAKQQLMHSPVVNFSKKKRE
        FR SL N +WKSML    ++G RR ASSTT+ S    NA++SSSS S G SG SEYMK EYAPIYIVMG V V ++IATHTAKQQL+HSP+VN SKKKRE
Subjt:  FRPSLTNNVWKSML--RTMEGKRRLASSTTSASGVENNAANSSSSKSGGSSGESEYMKSEYAPIYIVMGFVGVALTIATHTAKQQLMHSPVVNFSKKKRE

Query:  SVPEVEDPDTVINSADKFINKSFLRKVAHIQDDTNTLTDPVHPDPFTRPRNAETLKTAGVNPAR
        S+PEVEDPDTVI SADKFINKSFLRKVAHIQDDT TL DPVH DPFTRPRNAETLKTAGV+P R
Subjt:  SVPEVEDPDTVINSADKFINKSFLRKVAHIQDDTNTLTDPVHPDPFTRPRNAETLKTAGVNPAR

A0A5D3DLZ1 Putative Ribosome biogenesis protein NEP1-like5.0e-5378.77Show/hide
Query:  MEGKRRLASSTTSASGVENNAANSSSSKSGGSSGESEYMKSEYAPIYIVMGFVGVALTIATHTAKQQLMHSPVVNFSKKKRESVPEVEDPDTVINSADKF
        ++G RR ASSTT+ S   N +++SSSS S G SGESEYMK EYAPIYIVMG V V ++IATHTAKQQL+HSP+VN SKKKRES+PEVEDPDTVI SADKF
Subjt:  MEGKRRLASSTTSASGVENNAANSSSSKSGGSSGESEYMKSEYAPIYIVMGFVGVALTIATHTAKQQLMHSPVVNFSKKKRESVPEVEDPDTVINSADKF

Query:  INKSFLRKVAHIQDDTNTLTDPVHPDPFTRPRNAETLKTAGVNPAR
        INKSFLRKVAHIQDDT TL DPVHPDPFTRPRNAETLKTAGV+P R
Subjt:  INKSFLRKVAHIQDDTNTLTDPVHPDPFTRPRNAETLKTAGVNPAR

A0A6J1D5L1 uncharacterized protein LOC111017496 isoform X28.3e-4869.88Show/hide
Query:  MAFRPSLTNNVWKSML----RTMEGKRRLASSTTSASGVENNAANSSSSKSGGSSGESEYMKSEYAPIYIVMGFVGVALTIATHTAKQQLMHSPVVNFSK
        MAFR +L    WKSML      +EGKR  ASSTT        A++SSSSK       SEYMK EYAPIYIVMG V VA+TI THTAKQQL+HSPVV  SK
Subjt:  MAFRPSLTNNVWKSML----RTMEGKRRLASSTTSASGVENNAANSSSSKSGGSSGESEYMKSEYAPIYIVMGFVGVALTIATHTAKQQLMHSPVVNFSK

Query:  KKRESVPEVEDPDTVINSADKFINKSFLRKVAHIQDDTNTLTDPVHPDPFTRPRNAETLKTAGVNP
        KKRES+PEV+DPDTVI SADKF+NKSFLRKVAHIQD   TL DP HPDPFTRPRNAETLKTAGV+P
Subjt:  KKRESVPEVEDPDTVINSADKFINKSFLRKVAHIQDDTNTLTDPVHPDPFTRPRNAETLKTAGVNP

E5GB52 Uncharacterized protein1.2e-5178.08Show/hide
Query:  MEGKRRLASSTTSASGVENNAANSSSSKSGGSSGESEYMKSEYAPIYIVMGFVGVALTIATHTAKQQLMHSPVVNFSKKKRESVPEVEDPDTVINSADKF
        ++G RR ASSTT+ S    NA++SSSS S G SG SEYMK EYAPIYIVMG V V ++IATHTAKQQL+HSP+VN SKKKRES+PEVEDPDTVI SADKF
Subjt:  MEGKRRLASSTTSASGVENNAANSSSSKSGGSSGESEYMKSEYAPIYIVMGFVGVALTIATHTAKQQLMHSPVVNFSKKKRESVPEVEDPDTVINSADKF

Query:  INKSFLRKVAHIQDDTNTLTDPVHPDPFTRPRNAETLKTAGVNPAR
        INKSFLRKVAHIQDDT TL DPVH DPFTRPRNAETLKTAGV+P R
Subjt:  INKSFLRKVAHIQDDTNTLTDPVHPDPFTRPRNAETLKTAGVNPAR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G63060.1 unknown protein9.4e-2855.77Show/hide
Query:  EYAPIYIVMGFVGVALTIATHTAKQQLMHSPVVNFSKKKRESVPEVEDPDTVINSADKFINKSFLRKVAHIQDDTNT-LTDPVHPDPFTRPRNAETLKTA
        E+AP+ I+ GFVG+A+ +A H+ KQQLMH+P ++  K +R +V EV+DP+  ++SADKFINKS+LRKV  IQD +   L+DP  P+PFT PRNAETL + 
Subjt:  EYAPIYIVMGFVGVALTIATHTAKQQLMHSPVVNFSKKKRESVPEVEDPDTVINSADKFINKSFLRKVAHIQDDTNT-LTDPVHPDPFTRPRNAETLKTA

Query:  GVNP
        GV P
Subjt:  GVNP

AT5G07330.1 unknown protein1.2e-1935.42Show/hide
Query:  RRLASSTTSASGVENNAANSSSSKSGG--SSGESEYMKSEYAPIYIVMGFVGVALTIATHTAKQQLMHSPVVNFSKKKRESVPEVEDPDTVINSADKFIN
        +RL + T + +   + A ++++++ GG  ++  +   K ++ P+Y+ +G + +++T   +TA   L  +P V  +KK RE+VPE+EDPD V+N AD+F N
Subjt:  RRLASSTTSASGVENNAANSSSSKSGG--SSGESEYMKSEYAPIYIVMGFVGVALTIATHTAKQQLMHSPVVNFSKKKRESVPEVEDPDTVINSADKFIN

Query:  KSFLRKVAHIQ--DDTNTLTDPVHPDPFTRPRNAETLKTAGVNP
        +S+ RK+AH+Q  D  + ++DP+  D F     A TLK  GV+P
Subjt:  KSFLRKVAHIQ--DDTNTLTDPVHPDPFTRPRNAETLKTAGVNP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTTCAGACCCTCTCTCACAAATAATGTGTGGAAATCAATGCTTAGGACTATGGAAGGGAAGCGTCGTTTAGCTTCGTCTACCACCAGCGCTTCGGGCGTTGAAAA
TAATGCTGCGAATTCGTCTTCTTCTAAGTCGGGCGGTTCGAGTGGGGAAAGCGAGTACATGAAGAGTGAGTACGCACCAATCTACATTGTGATGGGGTTTGTGGGGGTTG
CTTTGACGATCGCAACCCACACGGCGAAGCAGCAGTTGATGCATTCGCCGGTGGTCAACTTCAGCAAGAAGAAGAGAGAGAGCGTTCCGGAGGTGGAGGATCCCGACACC
GTCATTAATTCCGCCGATAAATTTATCAACAAATCCTTTCTTAGGAAGGTCGCTCACATCCAGGACGACACCAACACCCTCACTGATCCCGTCCACCCTGACCCTTTTAC
CAGGCCTCGTAATGCCGAGACTCTCAAAACGGCTGGGGTGAATCCTGCCCGACATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTTCAGACCCTCTCTCACAAATAATGTGTGGAAATCAATGCTTAGGACTATGGAAGGGAAGCGTCGTTTAGCTTCGTCTACCACCAGCGCTTCGGGCGTTGAAAA
TAATGCTGCGAATTCGTCTTCTTCTAAGTCGGGCGGTTCGAGTGGGGAAAGCGAGTACATGAAGAGTGAGTACGCACCAATCTACATTGTGATGGGGTTTGTGGGGGTTG
CTTTGACGATCGCAACCCACACGGCGAAGCAGCAGTTGATGCATTCGCCGGTGGTCAACTTCAGCAAGAAGAAGAGAGAGAGCGTTCCGGAGGTGGAGGATCCCGACACC
GTCATTAATTCCGCCGATAAATTTATCAACAAATCCTTTCTTAGGAAGGTCGCTCACATCCAGGACGACACCAACACCCTCACTGATCCCGTCCACCCTGACCCTTTTAC
CAGGCCTCGTAATGCCGAGACTCTCAAAACGGCTGGGGTGAATCCTGCCCGACATTGA
Protein sequenceShow/hide protein sequence
MAFRPSLTNNVWKSMLRTMEGKRRLASSTTSASGVENNAANSSSSKSGGSSGESEYMKSEYAPIYIVMGFVGVALTIATHTAKQQLMHSPVVNFSKKKRESVPEVEDPDT
VINSADKFINKSFLRKVAHIQDDTNTLTDPVHPDPFTRPRNAETLKTAGVNPARH