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Tan0000149 (gene) of Snake gourd v1 genome

Gene IDTan0000149
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionGDT1 family protein
Genome locationLG05:78603016..78607885
RNA-Seq ExpressionTan0000149
SyntenyTan0000149
Gene Ontology termsGO:0032468 - Golgi calcium ion homeostasis (biological process)
GO:0032472 - Golgi calcium ion transport (biological process)
GO:0070588 - calcium ion transmembrane transport (biological process)
GO:0071421 - manganese ion transmembrane transport (biological process)
GO:0005794 - Golgi apparatus (cellular component)
GO:0009507 - chloroplast (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0005384 - manganese ion transmembrane transporter activity (molecular function)
GO:0015085 - calcium ion transmembrane transporter activity (molecular function)
InterPro domainsIPR001727 - Gdt1 family


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0049183.1 GDT1-like protein 2 [Cucumis melo var. makuwa]9.4e-2096.36Show/hide
Query:  LPIGEYAAVTLLLFFGLKSIKDAWDLPSSVPKQGDESPPELDEYVEAEELVKEKV
        LPIGEYAAVTLLLFFGLK+IKDAWDLPSSVPKQGDES PELDEYVEAEELVKEKV
Subjt:  LPIGEYAAVTLLLFFGLKSIKDAWDLPSSVPKQGDESPPELDEYVEAEELVKEKV
XP_008438406.1 PREDICTED: GDT1-like protein 2, chloroplastic [Cucumis melo]9.4e-2096.36Show/hide
Query:  LPIGEYAAVTLLLFFGLKSIKDAWDLPSSVPKQGDESPPELDEYVEAEELVKEKV
        LPIGEYAAVTLLLFFGLK+IKDAWDLPSSVPKQGDES PELDEYVEAEELVKEKV
Subjt:  LPIGEYAAVTLLLFFGLKSIKDAWDLPSSVPKQGDESPPELDEYVEAEELVKEKV
XP_022974902.1 protein PAM71-homolog, chloroplastic-like [Cucurbita maxima]2.7e-1994.55Show/hide
Query:  LPIGEYAAVTLLLFFGLKSIKDAWDLPSSVPKQGDESPPELDEYVEAEELVKEKV
        LPIGEYAAVTLLLFFGLKSIKDAW+LPSSVPKQ +ESPPELDEYVEAEELVKEKV
Subjt:  LPIGEYAAVTLLLFFGLKSIKDAWDLPSSVPKQGDESPPELDEYVEAEELVKEKV
XP_038900282.1 protein PAM71-homolog, chloroplastic isoform X1 [Benincasa hispida]5.5e-2096.36Show/hide
Query:  LPIGEYAAVTLLLFFGLKSIKDAWDLPSSVPKQGDESPPELDEYVEAEELVKEKV
        LPIGEYAAVTLLLFFGLKSIKDAWDLPSS+PKQGDES PELDEYVEAEELVKEKV
Subjt:  LPIGEYAAVTLLLFFGLKSIKDAWDLPSSVPKQGDESPPELDEYVEAEELVKEKV
XP_038900287.1 protein PAM71-homolog, chloroplastic isoform X2 [Benincasa hispida]5.5e-2096.36Show/hide
Query:  LPIGEYAAVTLLLFFGLKSIKDAWDLPSSVPKQGDESPPELDEYVEAEELVKEKV
        LPIGEYAAVTLLLFFGLKSIKDAWDLPSS+PKQGDES PELDEYVEAEELVKEKV
Subjt:  LPIGEYAAVTLLLFFGLKSIKDAWDLPSSVPKQGDESPPELDEYVEAEELVKEKV
TrEMBL top hitse value%identityAlignment
A0A1S3AWY0 GDT1 family protein4.6e-2096.36Show/hide
Query:  LPIGEYAAVTLLLFFGLKSIKDAWDLPSSVPKQGDESPPELDEYVEAEELVKEKV
        LPIGEYAAVTLLLFFGLK+IKDAWDLPSSVPKQGDES PELDEYVEAEELVKEKV
Subjt:  LPIGEYAAVTLLLFFGLKSIKDAWDLPSSVPKQGDESPPELDEYVEAEELVKEKV
A0A5A7TZZ5 GDT1 family protein4.6e-2096.36Show/hide
Query:  LPIGEYAAVTLLLFFGLKSIKDAWDLPSSVPKQGDESPPELDEYVEAEELVKEKV
        LPIGEYAAVTLLLFFGLK+IKDAWDLPSSVPKQGDES PELDEYVEAEELVKEKV
Subjt:  LPIGEYAAVTLLLFFGLKSIKDAWDLPSSVPKQGDESPPELDEYVEAEELVKEKV
A0A6J1G9C7 GDT1 family protein1.3e-1994.55Show/hide
Query:  LPIGEYAAVTLLLFFGLKSIKDAWDLPSSVPKQGDESPPELDEYVEAEELVKEKV
        LPIGEYAAVTLLLFFGLKSIKDAW+LPSSVPKQ +ESPPELDEYVEAEELVKEKV
Subjt:  LPIGEYAAVTLLLFFGLKSIKDAWDLPSSVPKQGDESPPELDEYVEAEELVKEKV
A0A6J1IBI9 GDT1 family protein1.3e-1994.55Show/hide
Query:  LPIGEYAAVTLLLFFGLKSIKDAWDLPSSVPKQGDESPPELDEYVEAEELVKEKV
        LPIGEYAAVTLLLFFGLKSIKDAW+LPSSVPKQ +ESPPELDEYVEAEELVKEKV
Subjt:  LPIGEYAAVTLLLFFGLKSIKDAWDLPSSVPKQGDESPPELDEYVEAEELVKEKV
A0A6J1IBK7 GDT1 family protein1.3e-1994.55Show/hide
Query:  LPIGEYAAVTLLLFFGLKSIKDAWDLPSSVPKQGDESPPELDEYVEAEELVKEKV
        LPIGEYAAVTLLLFFGLKSIKDAW+LPSSVPKQ +ESPPELDEYVEAEELVKEKV
Subjt:  LPIGEYAAVTLLLFFGLKSIKDAWDLPSSVPKQGDESPPELDEYVEAEELVKEKV
SwissProt top hitse value%identityAlignment
Q2R2Z4 GDT1-like protein 2, chloroplastic3.5e-0961.82Show/hide
Query:  LPIGEYAAVTLLLFFGLKSIKDAWDLPSSVPKQGDESPPELDEYVEAEELVKEKV
        LPIGEYAA+ LL FFG KSIKDAW LP +      +   E  E  EAEELVKEKV
Subjt:  LPIGEYAAVTLLLFFGLKSIKDAWDLPSSVPKQGDESPPELDEYVEAEELVKEKV
Q9T0H9 Protein PAM71-homolog, chloroplastic1.2e-1474.07Show/hide
Query:  LPIGEYAAVTLLLFFGLKSIKDAWDLPSSVPKQGDESPPELDEYVEAEELVKEK
        LPIGEYAA+ LL+FFGLKSIKDAWDLP    K G+E+  EL EY EAEELVKEK
Subjt:  LPIGEYAAVTLLLFFGLKSIKDAWDLPSSVPKQGDESPPELDEYVEAEELVKEK
Arabidopsis top hitse value%identityAlignment
AT4G13590.1 Uncharacterized protein family (UPF0016)8.8e-1674.07Show/hide
Query:  LPIGEYAAVTLLLFFGLKSIKDAWDLPSSVPKQGDESPPELDEYVEAEELVKEK
        LPIGEYAA+ LL+FFGLKSIKDAWDLP    K G+E+  EL EY EAEELVKEK
Subjt:  LPIGEYAAVTLLLFFGLKSIKDAWDLPSSVPKQGDESPPELDEYVEAEELVKEK
AT4G13590.2 Uncharacterized protein family (UPF0016)8.8e-1674.07Show/hide
Query:  LPIGEYAAVTLLLFFGLKSIKDAWDLPSSVPKQGDESPPELDEYVEAEELVKEK
        LPIGEYAA+ LL+FFGLKSIKDAWDLP    K G+E+  EL EY EAEELVKEK
Subjt:  LPIGEYAAVTLLLFFGLKSIKDAWDLPSSVPKQGDESPPELDEYVEAEELVKEK

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAATGGAAAGTTTGTCAAATGCTTTACCAATTGGAGAATATGCGGCGGTGACTCTTCTATTGTTCTTTGGTCTCAAGTCCATTAAAGATGCATGGGATCTTCCTTC
GAGTGTTCCTAAACAGGGTGATGAGAGTCCGCCAGAACTTGATGAATATGTCGAAGCAGAGGAGCTTGTTAAAGAAAAGGTAATACTCAACTACTTGGCGGGTGACAAAG
GTGTTGCAGAATTATGGTGA
mRNA sequenceShow/hide mRNA sequence
AAAAAAATCATTTGCGTGCGTATACTCTCGTTACGCTTTTCTAAAATCACAAGAGCAACTTTCCACTTTCCCCAAATTTCTCACATGCGAGGGGGAAATTTTCACTATTT
CCTCACCGTGATTCCTCTGATTTCCCTCTAACTCTTCGCTTCCCATTTCCCTCTTGCTCTTCCCCTCTCATTTTTCTTTGGTTCTTACCTTTTGTTTTCTCTCTCGTGTT
CTCATCATTTTTTTGTATCTCCTACAGCCCAAAATACGATCTGCAAAAGTGAAGATTTACTCCTCTCTCATCGCCTTTTTGCTTTGCCTCTCATCTCTCCGTCTCATGTG
TCACCAAGAATTCAGCTCTATCGAATAGATATATTGGCTTGCTGATATTCCACCTGTGAATAGATTTGCACAAAACATAATTACAGAAAGATGAGAATGGAAAGTTTGTC
AAATGCTTTACCAATTGGAGAATATGCGGCGGTGACTCTTCTATTGTTCTTTGGTCTCAAGTCCATTAAAGATGCATGGGATCTTCCTTCGAGTGTTCCTAAACAGGGTG
ATGAGAGTCCGCCAGAACTTGATGAATATGTCGAAGCAGAGGAGCTTGTTAAAGAAAAGGTAATACTCAACTACTTGGCGGGTGACAAAGGTGTTGCAGAATTATGGTGA
CTTTTTCAAAGTTTTGGTCATAATGTTGCCAATAAGTTTCATGTTTTAACCCTTTATAGTGTGTTAGGTTAATGAATGTAAGTTCTCTTGTATTGTAAACTTGCTTGAAG
TGTTAGTTGAGTTTATGGCTTAGGATCGTTACAATAGTTCTTGTAATTTTTGAATTGTTGACATGAGGTTTGATAAGTTCTTGTAATTTTACAATTGTTCATGAGCTTAC
GTTCAATATAATTTATTGGAATGCAA
Protein sequenceShow/hide protein sequence
MRMESLSNALPIGEYAAVTLLLFFGLKSIKDAWDLPSSVPKQGDESPPELDEYVEAEELVKEKVILNYLAGDKGVAELW