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Tan0000150 (gene) of Snake gourd v1 genome

Gene IDTan0000150
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRetrotransposable element Tf2
Genome locationLG02:79691631..79693691
RNA-Seq ExpressionTan0000150
SyntenyTan0000150
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025901.1 hypothetical protein E6C27_scaffold34G001890 [Cucumis melo var. makuwa]9.6e-1847.79Show/hide
Query:  SPTTSSSSQQGSSIPTTFYNFPHAGIKEVKQWFADNGYLQDMSKKKNVEFLNSKSKLLATLAQTTTEADLQKILNQVTLIASSSSPQNSEVEEND-----
        SP ++          T  Y+F HA IK +K+WF +NGYLQD+ + KNV+FLN KSKLLATLAQ TT+AD Q++L      ++SS   +S ++E++     
Subjt:  SPTTSSSSQQGSSIPTTFYNFPHAGIKEVKQWFADNGYLQDMSKKKNVEFLNSKSKLLATLAQTTTEADLQKILNQVTLIASSSSPQNSEVEEND-----

Query:  EYDINDPFLDSQP
        EYD+++PFLDSQP
Subjt:  EYDINDPFLDSQP

KAA0034823.1 hypothetical protein E6C27_scaffold213G00570 [Cucumis melo var. makuwa]1.4e-1653.68Show/hide
Query:  YNFPHAGIKEVKQWFADNGYLQDMSKKKNVEFLNSKSKLLATLAQTTTEADLQKILNQVTLIASSSSPQNSEVEEND-----EYDINDPFLDSQP
        YNF HA IK +K+WFA+N YLQD+ ++KNVEFLN KSKLL  LAQ TT+AD Q++L+     +SSS   +S ++E++     EYD++D  LDSQP
Subjt:  YNFPHAGIKEVKQWFADNGYLQDMSKKKNVEFLNSKSKLLATLAQTTTEADLQKILNQVTLIASSSSPQNSEVEEND-----EYDINDPFLDSQP

KAA0049709.1 hypothetical protein E6C27_scaffold76G00530 [Cucumis melo var. makuwa]2.6e-1542.6Show/hide
Query:  MSVDQYAMDLDFTQVNRPRTKSASIQIRDSMESLTPPPRPSTSLIRPI-VVTPMRLSVSPTTSSSSQQGSSIPTTFYNFPHAGIKEVKQWFADNGYLQDM
        MS DQYAMDL FT V R R++S+SI+I    ES T PP+PST+LIRP   V  MR  VSP   SS+++ S+ PTT                    Y Q +
Subjt:  MSVDQYAMDLDFTQVNRPRTKSASIQIRDSMESLTPPPRPSTSLIRPI-VVTPMRLSVSPTTSSSSQQGSSIPTTFYNFPHAGIKEVKQWFADNGYLQDM

Query:  SKKKNVEFLNSKSKLLATLAQTTTEADLQKILNQVTLIASSSSPQNSEVEEND-----EYDINDPFLDS
        +  K       +SKLLA LAQ TT+AD Q++L+     +SSS   +S ++E++     EYD++DP+LDS
Subjt:  SKKKNVEFLNSKSKLLATLAQTTTEADLQKILNQVTLIASSSSPQNSEVEEND-----EYDINDPFLDS

KAA0059031.1 polyprotein [Cucumis melo var. makuwa]2.1e-1243.09Show/hide
Query:  PPRPSTSLIRPIVVTPMRLSVSPTTSSSSQQGSSIPTTF---------------------------------YNFPHAGIKEVKQWFADNGYLQDMSKKK
        PPRPS +LIR    + + + + P  S SS + SS P+T                                  YNF HA IK +K+WFADNGYLQD+ ++K
Subjt:  PPRPSTSLIRPIVVTPMRLSVSPTTSSSSQQGSSIPTTF---------------------------------YNFPHAGIKEVKQWFADNGYLQDMSKKK

Query:  NVEFLNSKSKLLATLAQTTTEAD
        N+EFLN KSKLLA LAQ TT+AD
Subjt:  NVEFLNSKSKLLATLAQTTTEAD

TYJ98361.1 hypothetical protein E5676_scaffold232G00950 [Cucumis melo var. makuwa]1.2e-2343.3Show/hide
Query:  MSVDQYAMDLDFTQVNRPRTKSASIQIRDSMESLTPPPRPSTSLIRPI-VVTPMRLSVSPTTSSSSQQGSSIPTTFYN--------FPHAGIKE------
        MSVDQYAMDL +T V + R+KS+ I IR  MES T PPRPS +LI P   V  MR S SP   SS+++ S++PTT+           P   IK       
Subjt:  MSVDQYAMDLDFTQVNRPRTKSASIQIRDSMESLTPPPRPSTSLIRPI-VVTPMRLSVSPTTSSSSQQGSSIPTTFYN--------FPHAGIKE------

Query:  ------VKQWFADNGYLQDMSKKKNVEFLNSKSKLLATLAQTTTEADLQKILNQVTLIASSSSPQNSEVEEND-----EYDINDPFLDSQPFRP
              ++  +  NG LQD+ ++KN +FLN K K LA L Q T +AD Q++L+     +SSS P  S ++E++     EYD++DPFLDSQP  P
Subjt:  ------VKQWFADNGYLQDMSKKKNVEFLNSKSKLLATLAQTTTEADLQKILNQVTLIASSSSPQNSEVEEND-----EYDINDPFLDSQPFRP

TrEMBL top hitse value%identityAlignment
A0A5A7SNT5 Uncharacterized protein4.6e-1847.79Show/hide
Query:  SPTTSSSSQQGSSIPTTFYNFPHAGIKEVKQWFADNGYLQDMSKKKNVEFLNSKSKLLATLAQTTTEADLQKILNQVTLIASSSSPQNSEVEEND-----
        SP ++          T  Y+F HA IK +K+WF +NGYLQD+ + KNV+FLN KSKLLATLAQ TT+AD Q++L      ++SS   +S ++E++     
Subjt:  SPTTSSSSQQGSSIPTTFYNFPHAGIKEVKQWFADNGYLQDMSKKKNVEFLNSKSKLLATLAQTTTEADLQKILNQVTLIASSSSPQNSEVEEND-----

Query:  EYDINDPFLDSQP
        EYD+++PFLDSQP
Subjt:  EYDINDPFLDSQP

A0A5A7SWC0 Uncharacterized protein6.7e-1753.68Show/hide
Query:  YNFPHAGIKEVKQWFADNGYLQDMSKKKNVEFLNSKSKLLATLAQTTTEADLQKILNQVTLIASSSSPQNSEVEEND-----EYDINDPFLDSQP
        YNF HA IK +K+WFA+N YLQD+ ++KNVEFLN KSKLL  LAQ TT+AD Q++L+     +SSS   +S ++E++     EYD++D  LDSQP
Subjt:  YNFPHAGIKEVKQWFADNGYLQDMSKKKNVEFLNSKSKLLATLAQTTTEADLQKILNQVTLIASSSSPQNSEVEEND-----EYDINDPFLDSQP

A0A5A7U8A0 Uncharacterized protein1.3e-1542.6Show/hide
Query:  MSVDQYAMDLDFTQVNRPRTKSASIQIRDSMESLTPPPRPSTSLIRPI-VVTPMRLSVSPTTSSSSQQGSSIPTTFYNFPHAGIKEVKQWFADNGYLQDM
        MS DQYAMDL FT V R R++S+SI+I    ES T PP+PST+LIRP   V  MR  VSP   SS+++ S+ PTT                    Y Q +
Subjt:  MSVDQYAMDLDFTQVNRPRTKSASIQIRDSMESLTPPPRPSTSLIRPI-VVTPMRLSVSPTTSSSSQQGSSIPTTFYNFPHAGIKEVKQWFADNGYLQDM

Query:  SKKKNVEFLNSKSKLLATLAQTTTEADLQKILNQVTLIASSSSPQNSEVEEND-----EYDINDPFLDS
        +  K       +SKLLA LAQ TT+AD Q++L+     +SSS   +S ++E++     EYD++DP+LDS
Subjt:  SKKKNVEFLNSKSKLLATLAQTTTEADLQKILNQVTLIASSSSPQNSEVEEND-----EYDINDPFLDS

A0A5A7UZX0 Polyprotein1.0e-1243.09Show/hide
Query:  PPRPSTSLIRPIVVTPMRLSVSPTTSSSSQQGSSIPTTF---------------------------------YNFPHAGIKEVKQWFADNGYLQDMSKKK
        PPRPS +LIR    + + + + P  S SS + SS P+T                                  YNF HA IK +K+WFADNGYLQD+ ++K
Subjt:  PPRPSTSLIRPIVVTPMRLSVSPTTSSSSQQGSSIPTTF---------------------------------YNFPHAGIKEVKQWFADNGYLQDMSKKK

Query:  NVEFLNSKSKLLATLAQTTTEAD
        N+EFLN KSKLLA LAQ TT+AD
Subjt:  NVEFLNSKSKLLATLAQTTTEAD

A0A5D3BI61 Uncharacterized protein5.6e-2443.3Show/hide
Query:  MSVDQYAMDLDFTQVNRPRTKSASIQIRDSMESLTPPPRPSTSLIRPI-VVTPMRLSVSPTTSSSSQQGSSIPTTFYN--------FPHAGIKE------
        MSVDQYAMDL +T V + R+KS+ I IR  MES T PPRPS +LI P   V  MR S SP   SS+++ S++PTT+           P   IK       
Subjt:  MSVDQYAMDLDFTQVNRPRTKSASIQIRDSMESLTPPPRPSTSLIRPI-VVTPMRLSVSPTTSSSSQQGSSIPTTFYN--------FPHAGIKE------

Query:  ------VKQWFADNGYLQDMSKKKNVEFLNSKSKLLATLAQTTTEADLQKILNQVTLIASSSSPQNSEVEEND-----EYDINDPFLDSQPFRP
              ++  +  NG LQD+ ++KN +FLN K K LA L Q T +AD Q++L+     +SSS P  S ++E++     EYD++DPFLDSQP  P
Subjt:  ------VKQWFADNGYLQDMSKKKNVEFLNSKSKLLATLAQTTTEADLQKILNQVTLIASSSSPQNSEVEEND-----EYDINDPFLDSQPFRP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCGTCGATCAATACGCAATGGATCTGGACTTCACTCAAGTGAATCGCCCAAGAACCAAAAGTGCATCGATTCAAATAAGAGATTCAATGGAGTCATTAACTCCACC
ACCGAGGCCATCAACCTCTCTCATACGACCTATTGTCGTTACACCAATGAGACTTTCCGTCTCACCTACTACTTCATCTTCATCTCAACAGGGATCTTCAATCCCTACAA
CTTTTTACAACTTTCCTCACGCAGGAATCAAAGAAGTGAAGCAATGGTTTGCCGATAATGGCTACCTCCAAGACATGTCAAAGAAGAAAAATGTGGAGTTCCTCAATTCC
AAATCAAAGCTGTTAGCTACCTTAGCACAAACAACAACAGAGGCAGACTTACAGAAAATATTAAATCAAGTTACTTTAATAGCATCTTCGTCTTCTCCACAAAACTCTGA
AGTAGAGGAAAATGATGAATATGATATCAATGATCCATTCCTAGATTCCCAACCATTCCGTCCGCTGGTTGGTAAAGGTTGTGTTCCCGACAATAAGAGTAAGTCCGTTG
GTAAGCTCTTGTTCCCCAGTAACTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGCGTCGATCAATACGCAATGGATCTGGACTTCACTCAAGTGAATCGCCCAAGAACCAAAAGTGCATCGATTCAAATAAGAGATTCAATGGAGTCATTAACTCCACC
ACCGAGGCCATCAACCTCTCTCATACGACCTATTGTCGTTACACCAATGAGACTTTCCGTCTCACCTACTACTTCATCTTCATCTCAACAGGGATCTTCAATCCCTACAA
CTTTTTACAACTTTCCTCACGCAGGAATCAAAGAAGTGAAGCAATGGTTTGCCGATAATGGCTACCTCCAAGACATGTCAAAGAAGAAAAATGTGGAGTTCCTCAATTCC
AAATCAAAGCTGTTAGCTACCTTAGCACAAACAACAACAGAGGCAGACTTACAGAAAATATTAAATCAAGTTACTTTAATAGCATCTTCGTCTTCTCCACAAAACTCTGA
AGTAGAGGAAAATGATGAATATGATATCAATGATCCATTCCTAGATTCCCAACCATTCCGTCCGCTGGTTGGTAAAGGTTGTGTTCCCGACAATAAGAGTAAGTCCGTTG
GTAAGCTCTTGTTCCCCAGTAACTAG
Protein sequenceShow/hide protein sequence
MSVDQYAMDLDFTQVNRPRTKSASIQIRDSMESLTPPPRPSTSLIRPIVVTPMRLSVSPTTSSSSQQGSSIPTTFYNFPHAGIKEVKQWFADNGYLQDMSKKKNVEFLNS
KSKLLATLAQTTTEADLQKILNQVTLIASSSSPQNSEVEENDEYDINDPFLDSQPFRPLVGKGCVPDNKSKSVGKLLFPSN