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Tan0000166 (gene) of Snake gourd v1 genome

Gene IDTan0000166
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionLysM domain-containing protein
Genome locationLG01:2566380..2567304
RNA-Seq ExpressionTan0000166
SyntenyTan0000166
Gene Ontology termsGO:0006468 - protein phosphorylation (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0004672 - protein kinase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
InterPro domainsIPR018392 - LysM domain
IPR036779 - LysM domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6576752.1 hypothetical protein SDJN03_24326, partial [Cucurbita argyrosperma subsp. sororia]2.4e-3878.07Show/hide
Query:  RATPP--RPLIDVVSWYCALGLLGLILIGSIRDSSFSSAAT---AGMLRGNLLTERRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGL
        R  PP  R LIDVVSWYCAL LLGLILIGSIR++S SSA+      MLRGNLLT  R CDEIYVVGEGETLHTISDKCGDP+IVERNPHIHDPDDVFPGL
Subjt:  RATPP--RPLIDVVSWYCALGLLGLILIGSIRDSSFSSAAT---AGMLRGNLLTERRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGL

Query:  VIKIISSSKPTNFG
        VIKIISS  P   G
Subjt:  VIKIISSSKPTNFG

KGN57357.2 hypothetical protein Csa_009741 [Cucumis sativus]8.1e-3975.44Show/hide
Query:  SISRSSYRATPPRPLIDVVSWYCALGLLGLILIGSIRDSSFSSAATAGMLRGNLLTERRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFP
        S+ RS    +  RPLIDVVSWYCA+GLLGLILIGSIR++  SS+    +LRGNL+T  RPCDEIYVVGEGETLHTISDKCGDP+IVERNPHIHDPDDVFP
Subjt:  SISRSSYRATPPRPLIDVVSWYCALGLLGLILIGSIRDSSFSSAATAGMLRGNLLTERRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFP

Query:  GLVIKIISSSKPTN
        GLVIKII+SS   N
Subjt:  GLVIKIISSSKPTN

XP_004150301.1 uncharacterized protein LOC101210054 [Cucumis sativus]8.1e-3975.44Show/hide
Query:  SISRSSYRATPPRPLIDVVSWYCALGLLGLILIGSIRDSSFSSAATAGMLRGNLLTERRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFP
        S+ RS    +  RPLIDVVSWYCA+GLLGLILIGSIR++  SS+    +LRGNL+T  RPCDEIYVVGEGETLHTISDKCGDP+IVERNPHIHDPDDVFP
Subjt:  SISRSSYRATPPRPLIDVVSWYCALGLLGLILIGSIRDSSFSSAATAGMLRGNLLTERRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFP

Query:  GLVIKIISSSKPTN
        GLVIKII+SS   N
Subjt:  GLVIKIISSSKPTN

XP_008439155.1 PREDICTED: uncharacterized protein LOC103484036 [Cucumis melo]7.4e-4077.68Show/hide
Query:  SRSSYRATPPRPLIDVVSWYCALGLLGLILIGSIRDSSFSSAATAGMLRGNLLTERRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGL
        SR    ++  RPLIDVVSWYCA+GLLGLILIGSIR++S SS      LRGNL+T  RPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGL
Subjt:  SRSSYRATPPRPLIDVVSWYCALGLLGLILIGSIRDSSFSSAATAGMLRGNLLTERRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGL

Query:  VIKIISSSKPTN
        VIKII+SS   N
Subjt:  VIKIISSSKPTN

XP_022157015.1 uncharacterized protein LOC111023841 [Momordica charantia]3.1e-3876.15Show/hide
Query:  ATPPRPLIDVVSWYCALGLLGLILIGSIRDSSFSS-AATAGMLRGNLLTERRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKII
        A   RP  DVVSWYCA+G+L LILIGSIR+S++S+ AA  G L    L   RPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKII
Subjt:  ATPPRPLIDVVSWYCALGLLGLILIGSIRDSSFSS-AATAGMLRGNLLTERRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKII

Query:  SSSKPTNFG
        SSS P+N G
Subjt:  SSSKPTNFG

TrEMBL top hitse value%identityAlignment
A0A0A0L5R9 LysM domain-containing protein3.9e-3975.44Show/hide
Query:  SISRSSYRATPPRPLIDVVSWYCALGLLGLILIGSIRDSSFSSAATAGMLRGNLLTERRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFP
        S+ RS    +  RPLIDVVSWYCA+GLLGLILIGSIR++  SS+    +LRGNL+T  RPCDEIYVVGEGETLHTISDKCGDP+IVERNPHIHDPDDVFP
Subjt:  SISRSSYRATPPRPLIDVVSWYCALGLLGLILIGSIRDSSFSSAATAGMLRGNLLTERRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFP

Query:  GLVIKIISSSKPTN
        GLVIKII+SS   N
Subjt:  GLVIKIISSSKPTN

A0A1S3AXP2 uncharacterized protein LOC1034840363.6e-4077.68Show/hide
Query:  SRSSYRATPPRPLIDVVSWYCALGLLGLILIGSIRDSSFSSAATAGMLRGNLLTERRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGL
        SR    ++  RPLIDVVSWYCA+GLLGLILIGSIR++S SS      LRGNL+T  RPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGL
Subjt:  SRSSYRATPPRPLIDVVSWYCALGLLGLILIGSIRDSSFSSAATAGMLRGNLLTERRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGL

Query:  VIKIISSSKPTN
        VIKII+SS   N
Subjt:  VIKIISSSKPTN

A0A5A7VAP9 Peptidoglycan-binding LysM domain-containing protein3.6e-4077.68Show/hide
Query:  SRSSYRATPPRPLIDVVSWYCALGLLGLILIGSIRDSSFSSAATAGMLRGNLLTERRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGL
        SR    ++  RPLIDVVSWYCA+GLLGLILIGSIR++S SS      LRGNL+T  RPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGL
Subjt:  SRSSYRATPPRPLIDVVSWYCALGLLGLILIGSIRDSSFSSAATAGMLRGNLLTERRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGL

Query:  VIKIISSSKPTN
        VIKII+SS   N
Subjt:  VIKIISSSKPTN

A0A6J1DRZ3 uncharacterized protein LOC1110238411.5e-3876.15Show/hide
Query:  ATPPRPLIDVVSWYCALGLLGLILIGSIRDSSFSS-AATAGMLRGNLLTERRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKII
        A   RP  DVVSWYCA+G+L LILIGSIR+S++S+ AA  G L    L   RPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKII
Subjt:  ATPPRPLIDVVSWYCALGLLGLILIGSIRDSSFSS-AATAGMLRGNLLTERRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKII

Query:  SSSKPTNFG
        SSS P+N G
Subjt:  SSSKPTNFG

A0A6J1J769 uncharacterized protein LOC1114831841.5e-3876.99Show/hide
Query:  RATPP--RPLIDVVSWYCALGLLGLILIGSIRDSSFSSAATAG--MLRGNLLTERRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLV
        R  PP  R LIDVVSWYCA+ +LGLILIGSIR++S S++A  G  MLRGNLLT  R CDEIYVVGEGETLHTISDKCGDP+IVERNPHIHDPDDVFPGLV
Subjt:  RATPP--RPLIDVVSWYCALGLLGLILIGSIRDSSFSSAATAG--MLRGNLLTERRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLV

Query:  IKIISSSKPTNFG
        IKIISS  P   G
Subjt:  IKIISSSKPTNFG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G52790.1 peptidoglycan-binding LysM domain-containing protein1.8e-2050Show/hide
Query:  VSWYCALGLLGLILIGSIRDSSFSSAATAGMLRGNLL----TERRP-CDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISS
        +SWYCA+    ++L+ S + +   S       + +++    + RRP CDEIY V EGETL TIS+KCGDP+IVE NPHIHD DD+FPGL+I+I  S
Subjt:  VSWYCALGLLGLILIGSIRDSSFSSAATAGMLRGNLL----TERRP-CDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISS

AT4G25433.1 peptidoglycan-binding LysM domain-containing protein2.4e-2556.25Show/hide
Query:  DVVSWYCALGLLGLILIGSIRDSS------FSSAATAGMLRGNLLTERRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKI
        + V+ YC + LL L L GS+++S+      +       + RG  + E RPC+E+YVVGEG+TLH+IS+KCGDPFIVERNPHIHDPDDVFPGL+IK+
Subjt:  DVVSWYCALGLLGLILIGSIRDSS------FSSAATAGMLRGNLLTERRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKI

AT5G62150.1 peptidoglycan-binding LysM domain-containing protein5.8e-2762.22Show/hide
Query:  DVVSWYCALGLLGLILIGSIRDSSFSSAATAGMLRGNLLTERRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKI
        D+ +W  A+ LL LIL+ S+R+++ S++     +RG+  +  +PC+EIY+VGEGETLHTI DKCGDPFIVERNPHIHDPDDVFPGLV+KI
Subjt:  DVVSWYCALGLLGLILIGSIRDSSFSSAATAGMLRGNLLTERRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGCCGCCGCCTCTATTTCCAGAAGCAGCTACAGAGCTACGCCACCACGCCCCCTAATCGACGTCGTTTCGTGGTACTGCGCCCTGGGCCTTTTGGGCCTGATTTT
GATCGGCTCCATCAGAGACAGCTCCTTCTCCTCCGCGGCCACCGCCGGGATGCTCAGAGGGAACTTGCTGACGGAGCGGCGGCCGTGCGACGAGATTTATGTCGTCGGAG
AAGGAGAAACGCTTCACACGATTAGCGACAAGTGCGGTGACCCGTTTATCGTGGAGCGGAACCCGCATATCCATGACCCGGATGACGTCTTCCCCGGTTTGGTCATCAAA
ATTATCTCCTCTTCCAAGCCTACCAATTTCGGATGA
mRNA sequenceShow/hide mRNA sequence
TTAGAAGGAGTTGGAAGGGTGATTTTGCAGTTGAGAGAATTAGTTGAGACGACTTCAAAAACCAATCCAAAAATTAGAACTCAAGTCGTGGTAAGGTAAGCTCTGCTCAA
CGTCCTCCCCAATTCAAAATCCTCTTTTAATGTTTCTCTCTCCCCTCTCATAAATGATAAAACAAAATCATTTCTATAAATAACTAATTCTGAATTCTCTCCTTCTCCAT
TTTATTTTACACTTTCCCTACCATTCACCATGGCCGCCGCCGCCTCTATTTCCAGAAGCAGCTACAGAGCTACGCCACCACGCCCCCTAATCGACGTCGTTTCGTGGTAC
TGCGCCCTGGGCCTTTTGGGCCTGATTTTGATCGGCTCCATCAGAGACAGCTCCTTCTCCTCCGCGGCCACCGCCGGGATGCTCAGAGGGAACTTGCTGACGGAGCGGCG
GCCGTGCGACGAGATTTATGTCGTCGGAGAAGGAGAAACGCTTCACACGATTAGCGACAAGTGCGGTGACCCGTTTATCGTGGAGCGGAACCCGCATATCCATGACCCGG
ATGACGTCTTCCCCGGTTTGGTCATCAAAATTATCTCCTCTTCCAAGCCTACCAATTTCGGATGATTTCTTTTTCTTTCTTTTTTACCTTTTCCTTTTGAATAAAATAAA
TTCTGAGAAATAATAATATAAACTCTTCGGAGTTTCAGGCCATTTTATACCCCTCCAAAAAAAAAAAAATTTAACTCAAAATTTTAGAATCTGTTTATAATTTCCGAGAC
AGACATAGTTATATATGTATATGTGATATATCGAGGTTTAATTTGTGTTTTTTTCTTTTTTCTTTAAGGATATAGAGGTAAAAGATGGCGGATCTTCGCTCGCATGTATA
TCATAATTAATATAAATATTTGAGAGGAAGAATGTTTATTTGTAA
Protein sequenceShow/hide protein sequence
MAAAASISRSSYRATPPRPLIDVVSWYCALGLLGLILIGSIRDSSFSSAATAGMLRGNLLTERRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIK
IISSSKPTNFG