; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0000240 (gene) of Snake gourd v1 genome

Gene IDTan0000240
OrganismTrichosanthes anguina (Snake gourd v1)
Description50S ribosomal protein 5, chloroplastic
Genome locationLG03:59861118..59862870
RNA-Seq ExpressionTan0000240
SyntenyTan0000240
Gene Ontology termsGO:0032544 - plastid translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0009536 - plastid (cellular component)
InterPro domainsIPR040307 - 50S ribosomal protein 5, chloroplastic


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7013851.1 50S ribosomal protein 5, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]6.9e-5986.62Show/hide
Query:  MAFLLCSNPISTSLHSSPF--SPSPSPSCFPTNSAAPNSMFLMKPIGFQPKNF-GVRLRNPSFVENTATLIAKAASEIDATGETDSSEPQPPAEAKKEDV
        MAFLLCSNP+S SLHSS F  SPSPSPSCFP N A  NSM LMKP GFQPK+F GVRLRNPSFVENT + I KAASEIDATGETDS+EP+P AEAKKEDV
Subjt:  MAFLLCSNPISTSLHSSPF--SPSPSPSCFPTNSAAPNSMFLMKPIGFQPKNF-GVRLRNPSFVENTATLIAKAASEIDATGETDSSEPQPPAEAKKEDV

Query:  PVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV
         VDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV
Subjt:  PVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV

XP_022154476.1 50S ribosomal protein 5, chloroplastic [Momordica charantia]1.1e-6187.9Show/hide
Query:  MAFLLCSNPISTSLHSSPF--SPSPSPSCFPTNSAAPNSMFLMKPIGFQPKNF-GVRLRNPSFVENTATLIAKAASEIDATGETDSSEPQPPAEAKKEDV
        MAFLLCSNP+STSL+SSPF  SPSPSPSCFPT SAAP+S+ LM+P+GFQPK F GVRLRN SFVENTA+LI KA SEID TGETDS+EPQPPAEAKKEDV
Subjt:  MAFLLCSNPISTSLHSSPF--SPSPSPSCFPTNSAAPNSMFLMKPIGFQPKNF-GVRLRNPSFVENTATLIAKAASEIDATGETDSSEPQPPAEAKKEDV

Query:  PVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV
        PVDKLPLESKLQERLEQK RMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV
Subjt:  PVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV

XP_022949869.1 50S ribosomal protein 5 alpha, chloroplastic-like [Cucurbita moschata]2.8e-6086.79Show/hide
Query:  MAFLLCSNPISTSLHSSPF----SPSPSPSCFPTNSAAPNSMFLMKPIGFQPKNF-GVRLRNPSFVENTATLIAKAASEIDATGETDSSEPQPPAEAKKE
        MAFLLCSNP+S SLHSS F    SPSPSPSCFP N AA NSM LMKP GFQPK+F GVRLRNPSFVENT + I KAASEIDATGETDS+EP+PPAEAKKE
Subjt:  MAFLLCSNPISTSLHSSPF----SPSPSPSCFPTNSAAPNSMFLMKPIGFQPKNF-GVRLRNPSFVENTATLIAKAASEIDATGETDSSEPQPPAEAKKE

Query:  DVPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV
        DV VDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV
Subjt:  DVPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV

XP_023543496.1 50S ribosomal protein 5 alpha, chloroplastic-like [Cucurbita pepo subsp. pepo]1.1e-5986.16Show/hide
Query:  MAFLLCSNPISTSLHSSPF----SPSPSPSCFPTNSAAPNSMFLMKPIGFQPKNF-GVRLRNPSFVENTATLIAKAASEIDATGETDSSEPQPPAEAKKE
        MAFLLCSNP+S SLHSS F    SPSPSPSCFP N AA NSM LMKP GFQPK+F GVRLRNPSFVENT +   KAASEIDATGETDS+EP+P AEAKKE
Subjt:  MAFLLCSNPISTSLHSSPF----SPSPSPSCFPTNSAAPNSMFLMKPIGFQPKNF-GVRLRNPSFVENTATLIAKAASEIDATGETDSSEPQPPAEAKKE

Query:  DVPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV
        DVPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV
Subjt:  DVPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV

XP_038881132.1 50S ribosomal protein 5, chloroplastic [Benincasa hispida]4.0e-5986.54Show/hide
Query:  AFLLCSNPISTSLHSSPFS--PSPSPSCFPTNSAAPNSMFLMKPIGFQPKNF-GVRLRNPSFVENTATLIAKAASEIDATGETDSSEPQPPAEAKKEDVP
        +FLLCSNP+STSLHS PFS  PSPSPSCFP  SAAP+ M LMKPIGFQPK+F GVRL  PSFVEN A+LI KAASEIDA G+TDSSE QPPAEAKKEDVP
Subjt:  AFLLCSNPISTSLHSSPFS--PSPSPSCFPTNSAAPNSMFLMKPIGFQPKNF-GVRLRNPSFVENTATLIAKAASEIDATGETDSSEPQPPAEAKKEDVP

Query:  VDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV
        VDKLPLESKLQERLEQKARMKLAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKNV
Subjt:  VDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV

TrEMBL top hitse value%identityAlignment
A0A0A0L3F4 Uncharacterized protein4.5e-5684.42Show/hide
Query:  AFLLCSNPISTSLHSSPFSPSPSPSCFPTNSAAPNSMFLMKPIGFQPKNF-GVRLRNPSFVENTATLIAKAASEIDATGETDSSEPQPPAEAKKEDVPVD
        +FLL SNP+STS H   FS SPSPSCFP  SA P+SM LMKPIGFQPK+F GVRLRN SFVENTA+L+ KAASE DATGETDSS+ QP AEAKKEDVPVD
Subjt:  AFLLCSNPISTSLHSSPFSPSPSPSCFPTNSAAPNSMFLMKPIGFQPKNF-GVRLRNPSFVENTATLIAKAASEIDATGETDSSEPQPPAEAKKEDVPVD

Query:  KLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV
        KLPLESKLQERLEQKARMKLAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKNV
Subjt:  KLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV

A0A1S3C2X0 50S ribosomal protein 5, chloroplastic8.0e-5381.17Show/hide
Query:  AFLLCSNPISTSLHSSPFSPSPSPSCFPTNSAAPNSMFLMKPIGFQPKNF-GVRLRNPSFVENTATLIAKAASEIDATGETDSSEPQPPAEAKKEDVPVD
        +FLLCSNP+STS H S   P     CFP  SA P+SM LMKPIGFQPK F GVRLRN  FVENTA+L+ KAASE DATGE DSSE QP AEAKKEDVPVD
Subjt:  AFLLCSNPISTSLHSSPFSPSPSPSCFPTNSAAPNSMFLMKPIGFQPKNF-GVRLRNPSFVENTATLIAKAASEIDATGETDSSEPQPPAEAKKEDVPVD

Query:  KLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV
        KLPLESKLQERLEQKARMKLAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKNV
Subjt:  KLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV

A0A6J1DNT9 50S ribosomal protein 5, chloroplastic5.5e-6287.9Show/hide
Query:  MAFLLCSNPISTSLHSSPF--SPSPSPSCFPTNSAAPNSMFLMKPIGFQPKNF-GVRLRNPSFVENTATLIAKAASEIDATGETDSSEPQPPAEAKKEDV
        MAFLLCSNP+STSL+SSPF  SPSPSPSCFPT SAAP+S+ LM+P+GFQPK F GVRLRN SFVENTA+LI KA SEID TGETDS+EPQPPAEAKKEDV
Subjt:  MAFLLCSNPISTSLHSSPF--SPSPSPSCFPTNSAAPNSMFLMKPIGFQPKNF-GVRLRNPSFVENTATLIAKAASEIDATGETDSSEPQPPAEAKKEDV

Query:  PVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV
        PVDKLPLESKLQERLEQK RMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV
Subjt:  PVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV

A0A6J1GE62 50S ribosomal protein 5 alpha, chloroplastic-like1.4e-6086.79Show/hide
Query:  MAFLLCSNPISTSLHSSPF----SPSPSPSCFPTNSAAPNSMFLMKPIGFQPKNF-GVRLRNPSFVENTATLIAKAASEIDATGETDSSEPQPPAEAKKE
        MAFLLCSNP+S SLHSS F    SPSPSPSCFP N AA NSM LMKP GFQPK+F GVRLRNPSFVENT + I KAASEIDATGETDS+EP+PPAEAKKE
Subjt:  MAFLLCSNPISTSLHSSPF----SPSPSPSCFPTNSAAPNSMFLMKPIGFQPKNF-GVRLRNPSFVENTATLIAKAASEIDATGETDSSEPQPPAEAKKE

Query:  DVPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV
        DV VDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV
Subjt:  DVPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV

A0A6J1HS41 50S ribosomal protein 5 alpha, chloroplastic-like7.4e-5985.99Show/hide
Query:  MAFLLCSNPISTSLHSSPF--SPSPSPSCFPTNSAAPNSMFLMKPIGFQPKNF-GVRLRNPSFVENTATLIAKAASEIDATGETDSSEPQPPAEAKKEDV
        MAFLLCSNP+S SLHSS    SPSPSPSCFP N +A NSM LMKP GFQPK+F GVRLRNPSFVENT + I KAASEID TGETDS+EP+P AEAKKEDV
Subjt:  MAFLLCSNPISTSLHSSPF--SPSPSPSCFPTNSAAPNSMFLMKPIGFQPKNF-GVRLRNPSFVENTATLIAKAASEIDATGETDSSEPQPPAEAKKEDV

Query:  PVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV
        PVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV
Subjt:  PVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV

SwissProt top hitse value%identityAlignment
P11891 50S ribosomal protein 5, chloroplastic9.2e-1445.86Show/hide
Query:  LLCSNPISTSLHSSPFSPSPSPSCFPTNSAAPNSMFLMKPIGFQPKNF--GVRLRNPSFVE--NTATLIAKAASEIDATGETDSSEPQPPAEAKKED--V
        LLC N  +T+  +S  S  P P+  P +            IG  P N   G R+  P   +    +  IA AA+  D+       E    +E+KKE   V
Subjt:  LLCSNPISTSLHSSPFSPSPSPSCFPTNSAAPNSMFLMKPIGFQPKNF--GVRLRNPSFVE--NTATLIAKAASEIDATGETDSSEPQPPAEAKKED--V

Query:  PVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV
         VDKLPLESKL+ER E+  +MKLAKKIRL+RKRLV+KR LRKKG WPPSKMKKL+ V
Subjt:  PVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV

P27684 50S ribosomal protein 5 alpha, chloroplastic1.8e-1445.45Show/hide
Query:  SPSPSPSCFP--TNSAAPNSMFLMK----PIGFQPKNFGVRL--RNPSFVENTATLIAKAASEIDATGETDSSEPQPPAEAKKEDVPVDKLPLESKLQER
        SP  S S  P  T+ A  +S F +K     +   P +FG RL    P   +   T++A     + A  E  + E    ++ ++ ++ V  LPLESKLQ +
Subjt:  SPSPSPSCFP--TNSAAPNSMFLMK----PIGFQPKNFGVRL--RNPSFVENTATLIAKAASEIDATGETDSSEPQPPAEAKKEDVPVDKLPLESKLQER

Query:  LEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV
        LEQK +MK+AKKIRLRR RL+RKR LRK+G WPPSKMKKLKNV
Subjt:  LEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV

Q9LER7 50S ribosomal protein 5, chloroplastic1.6e-1347.44Show/hide
Query:  LLCSNPISTSLHSSPFSPSPSPSCFPTNSAAPNSMFLMKPIGFQPKNFGVRLRNPSFVENTATLIAKAASEIDATGETDSSEPQPPAEAKK--EDVPVDK
        LLC N    SL S     S S S    + +  + +  +KP   + KN  V L   S   +   ++ KAA    A+G  D +EP+   E K     VPVDK
Subjt:  LLCSNPISTSLHSSPFSPSPSPSCFPTNSAAPNSMFLMKPIGFQPKNFGVRLRNPSFVENTATLIAKAASEIDATGETDSSEPQPPAEAKK--EDVPVDK

Query:  LPLESKLQER---LEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV
        LPLESK  +    LE + +MKLAKKIRLRRKRLVRKR +RKKGRWPPSKMKK KNV
Subjt:  LPLESKLQER---LEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV

Arabidopsis top hitse value%identityAlignment
AT3G56910.1 plastid-specific 50S ribosomal protein 51.1e-1447.44Show/hide
Query:  LLCSNPISTSLHSSPFSPSPSPSCFPTNSAAPNSMFLMKPIGFQPKNFGVRLRNPSFVENTATLIAKAASEIDATGETDSSEPQPPAEAKK--EDVPVDK
        LLC N    SL S     S S S    + +  + +  +KP   + KN  V L   S   +   ++ KAA    A+G  D +EP+   E K     VPVDK
Subjt:  LLCSNPISTSLHSSPFSPSPSPSCFPTNSAAPNSMFLMKPIGFQPKNFGVRLRNPSFVENTATLIAKAASEIDATGETDSSEPQPPAEAKK--EDVPVDK

Query:  LPLESKLQER---LEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV
        LPLESK  +    LE + +MKLAKKIRLRRKRLVRKR +RKKGRWPPSKMKK KNV
Subjt:  LPLESKLQER---LEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTTTCTTCTCTGCTCCAATCCCATCTCCACCTCTCTCCATTCATCTCCATTTTCGCCGTCGCCGTCGCCGTCGTGTTTTCCGACGAATTCCGCGGCCCCGAATTC
TATGTTTCTCATGAAGCCTATTGGGTTTCAGCCAAAAAATTTCGGAGTTCGACTTCGTAACCCCTCATTTGTTGAAAATACTGCGACATTGATTGCCAAAGCTGCATCTG
AGATTGATGCGACTGGAGAAACGGATAGTAGTGAACCACAGCCCCCTGCAGAAGCTAAAAAGGAAGATGTTCCAGTTGACAAACTTCCATTAGAATCAAAGCTGCAAGAG
AGGCTAGAGCAGAAGGCAAGGATGAAGCTAGCAAAAAAGATTAGGCTGCGAAGGAAGCGGCTTGTTCGGAAACGCCATTTGAGGAAAAAGGGACGATGGCCTCCTTCAAA
GATGAAGAAGTTGAAGAATGTTTGA
mRNA sequenceShow/hide mRNA sequence
GGTTCTCTTCTCAGACCAGAGAAAAACACCATGGCTTTTCTTCTCTGCTCCAATCCCATCTCCACCTCTCTCCATTCATCTCCATTTTCGCCGTCGCCGTCGCCGTCGTG
TTTTCCGACGAATTCCGCGGCCCCGAATTCTATGTTTCTCATGAAGCCTATTGGGTTTCAGCCAAAAAATTTCGGAGTTCGACTTCGTAACCCCTCATTTGTTGAAAATA
CTGCGACATTGATTGCCAAAGCTGCATCTGAGATTGATGCGACTGGAGAAACGGATAGTAGTGAACCACAGCCCCCTGCAGAAGCTAAAAAGGAAGATGTTCCAGTTGAC
AAACTTCCATTAGAATCAAAGCTGCAAGAGAGGCTAGAGCAGAAGGCAAGGATGAAGCTAGCAAAAAAGATTAGGCTGCGAAGGAAGCGGCTTGTTCGGAAACGCCATTT
GAGGAAAAAGGGACGATGGCCTCCTTCAAAGATGAAGAAGTTGAAGAATGTTTGATAATCTTTAGCTCCTTCAGTTCTTGCTGGTTTAGAGGTGACCCCACTTCTCCTCA
TTGCTTCCAATTTATTGTGTCTAATTTCTTTATACTTTTATGAAAATGTACTTGATTTCTTATATATCTGAAAGAATTCAGTGAGTAATGGAATATGCAAATTGTGCTAG
ATTTTAACGACTAATGTTAAGGATAATCTGTACAGTTCAACAAACTGAATACTTGATTTAGATTTTCATCAGTAGATCCTCTGATCTCTC
Protein sequenceShow/hide protein sequence
MAFLLCSNPISTSLHSSPFSPSPSPSCFPTNSAAPNSMFLMKPIGFQPKNFGVRLRNPSFVENTATLIAKAASEIDATGETDSSEPQPPAEAKKEDVPVDKLPLESKLQE
RLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV