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Tan0000319 (gene) of Snake gourd v1 genome

Gene IDTan0000319
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionCCHC-type domain-containing protein
Genome locationLG06:12246966..12248399
RNA-Seq ExpressionTan0000319
SyntenyTan0000319
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR025836 - Zinc knuckle CX2CX4HX4C
IPR036875 - Zinc finger, CCHC-type superfamily
IPR040256 - Uncharacterized protein At4g02000-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022132681.1 uncharacterized protein LOC111005481 [Momordica charantia]1.1e-1343Show/hide
Query:  KMMARICGNRLGQFQKVDSFDLDFCWGNTLHIRIRIDVTKPLKRGLEVKV-GVMGEETWCPVTYEKLPDFCYRCRRIGHRKREC-PFEVDIDAEGKKFGP
        K MA   GN +G F+ V+S   +FCWG+ L +R+R DV KPL RG+++ + G MG   W P+ YE+LPDF Y C R+ H  ++C    VD  ++  ++GP
Subjt:  KMMARICGNRLGQFQKVDSFDLDFCWGNTLHIRIRIDVTKPLKRGLEVKV-GVMGEETWCPVTYEKLPDFCYRCRRIGHRKREC-PFEVDIDAEGKKFGP

XP_022149484.1 uncharacterized protein LOC111017902 [Momordica charantia]1.3e-1446.91Show/hide
Query:  MARICGNRLGQFQKVDSFDLDFCWGNTLHIRIRIDVTKPLKRGLEVKVGVMGEETWCPVTYEKLPDFCYRCRRIGHRKREC
        MA I G +LG  ++++    D   G  + +R++IDV+KPL+RG+++K    G++ WCP+ YEKLPDFCY C +IGH  REC
Subjt:  MARICGNRLGQFQKVDSFDLDFCWGNTLHIRIRIDVTKPLKRGLEVKVGVMGEETWCPVTYEKLPDFCYRCRRIGHRKREC

XP_031120295.1 uncharacterized protein LOC116023434 [Ipomoea triloba]1.1e-1331.22Show/hide
Query:  GNRLGQFQKVDSFDLDFCWGNTLHIRIRIDVTKPLKRGLEVKVGVMGEETWCPVTYEKLPDFCYRCRRIGHRKRECPFEVDIDAEGKKFGPR----QRRA
        GN LG+F K D  + D  W   + IR+ +DVTKPLK+GL + +   GE+      YE+LP FC+ CRRIGH +R CP +++ +   + +GP      RR 
Subjt:  GNRLGQFQKVDSFDLDFCWGNTLHIRIRIDVTKPLKRGLEVKVGVMGEETWCPVTYEKLPDFCYRCRRIGHRKRECPFEVDIDAEGKKFGPR----QRRA

Query:  EEGDSEGDPNQSPPSTPSVQAS----------SGGSPKIQNKKPKMTGDNESRKFSDDFQIILNAINFSATTTTKEGDKAGFNEHLKAPRKMKKVVVQEV
        +   ++   ++ P  T S  A+            G P+ +    + T  + +    +D      AI F+AT T +E   + FN H+ A   +   + Q  
Subjt:  EEGDSEGDPNQSPPSTPSVQAS----------SGGSPKIQNKKPKMTGDNESRKFSDDFQIILNAINFSATTTTKEGDKAGFNEHLKAPRKMKKVVVQEV

Query:  TKTLG
        T  LG
Subjt:  TKTLG

XP_039815364.1 uncharacterized protein LOC120678302 [Panicum virgatum]2.1e-1534.72Show/hide
Query:  KMMARICGNRLGQFQKVDSFDLDFCWGNTLHIRIRIDVTKPLKRGLEVKVGVMGEETWCPVTYEKLPDFCYRCRRIGHRKREC----------PF--EVD
        K +A   G  LG+F +VD  + +F  G  L +++RI++ KPL+RG+ + VG   +E WCP+TYE LPDFCY C RIGH  + C          PF  E+ 
Subjt:  KMMARICGNRLGQFQKVDSFDLDFCWGNTLHIRIRIDVTKPLKRGLEVKVGVMGEETWCPVTYEKLPDFCYRCRRIGHRKREC----------PF--EVD

Query:  IDAEGKKFGPRQRRAEEGDSEGDPNQSPPSTPSVQASSGG--------SPKIQNKKPKMTGDNESRKFSDDFQIILNAINFSATTTTKEGDKA
             KKFG    R++E    G   +S  S P     SGG        S  +  +K  M G+  S K   D + + +        T ++GDKA
Subjt:  IDAEGKKFGPRQRRAEEGDSEGDPNQSPPSTPSVQASSGG--------SPKIQNKKPKMTGDNESRKFSDDFQIILNAINFSATTTTKEGDKA

XP_039827601.1 uncharacterized protein LOC120689378 [Panicum virgatum]7.8e-1533.68Show/hide
Query:  KMMARICGNRLGQFQKVDSFDLDFCWGNTLHIRIRIDVTKPLKRGLEVKVGVMGEETWCPVTYEKLPDFCYRCRRIGHRKREC----------PF--EVD
        K +A   G  LG+F +VD  +  F  G  L +++RI++ KPL+RG+ + VG   +E WCP+TYE LPDFCY C RIGH  + C          PF  E+ 
Subjt:  KMMARICGNRLGQFQKVDSFDLDFCWGNTLHIRIRIDVTKPLKRGLEVKVGVMGEETWCPVTYEKLPDFCYRCRRIGHRKREC----------PF--EVD

Query:  IDAEGKKFGPRQRRAEEGDSEGDPNQSPPSTPSVQASSGG--------SPKIQNKKPKMTGDNESRKFSDDFQIILNAINFSATTTTKEGDKA
             KKFG    R++E    G   +S  S P     SGG        S  +  +K  M    E  +   D + + +        T ++GDKA
Subjt:  IDAEGKKFGPRQRRAEEGDSEGDPNQSPPSTPSVQASSGG--------SPKIQNKKPKMTGDNESRKFSDDFQIILNAINFSATTTTKEGDKA

TrEMBL top hitse value%identityAlignment
A0A6J1BSZ1 uncharacterized protein LOC1110054815.5e-1443Show/hide
Query:  KMMARICGNRLGQFQKVDSFDLDFCWGNTLHIRIRIDVTKPLKRGLEVKV-GVMGEETWCPVTYEKLPDFCYRCRRIGHRKREC-PFEVDIDAEGKKFGP
        K MA   GN +G F+ V+S   +FCWG+ L +R+R DV KPL RG+++ + G MG   W P+ YE+LPDF Y C R+ H  ++C    VD  ++  ++GP
Subjt:  KMMARICGNRLGQFQKVDSFDLDFCWGNTLHIRIRIDVTKPLKRGLEVKV-GVMGEETWCPVTYEKLPDFCYRCRRIGHRKREC-PFEVDIDAEGKKFGP

A0A6J1D765 uncharacterized protein LOC1110179026.4e-1546.91Show/hide
Query:  MARICGNRLGQFQKVDSFDLDFCWGNTLHIRIRIDVTKPLKRGLEVKVGVMGEETWCPVTYEKLPDFCYRCRRIGHRKREC
        MA I G +LG  ++++    D   G  + +R++IDV+KPL+RG+++K    G++ WCP+ YEKLPDFCY C +IGH  REC
Subjt:  MARICGNRLGQFQKVDSFDLDFCWGNTLHIRIRIDVTKPLKRGLEVKVGVMGEETWCPVTYEKLPDFCYRCRRIGHRKREC

A0A6J1DU55 uncharacterized protein LOC1110231357.1e-1438.97Show/hide
Query:  KMMARICGNRLGQFQKVDSFDLDFCWGNTLHIRIRIDVTKPLKRGLEVKV-GVMGEETWCPVTYEKLPDFCYRCRRIGHRKRECPFEV----DIDAEGKK
        K MA   GN +G F  VD  +  F WG +L IR+ ID+TKPL+RG+++ + G MG   W P+ YE+LPDFCY C  IGH   +C        D      +
Subjt:  KMMARICGNRLGQFQKVDSFDLDFCWGNTLHIRIRIDVTKPLKRGLEVKV-GVMGEETWCPVTYEKLPDFCYRCRRIGHRKRECPFEV----DIDAEGKK

Query:  FGPRQR--RAEEGDSEGDPNQSPPSTPSVQASSGGS
        +GP  R   ++ G  +G   +SP    S  +SS  S
Subjt:  FGPRQR--RAEEGDSEGDPNQSPPSTPSVQASSGGS

A0A7J6FN44 zf-CCHC_4 domain-containing protein2.1e-1345.98Show/hide
Query:  SQTKMMARICGNRLGQFQKVDSFDLDFCWGNTLHIRIRIDVTKPLKRGLEVKVGVMGEETWCPVTYEKLPDFCYRCRRIGHRKRECP
        S+T+ +A+I GN +G+F +V    L+  WG  L +R+ IDV+KPL RG  V    M +E W    YE+LPDFCY C  IGH  R  P
Subjt:  SQTKMMARICGNRLGQFQKVDSFDLDFCWGNTLHIRIRIDVTKPLKRGLEVKVGVMGEETWCPVTYEKLPDFCYRCRRIGHRKRECP

A0A803P119 Uncharacterized protein8.4e-1546.51Show/hide
Query:  SQTKMMARICGNRLGQFQKVDSFDLDFCWGNTLHIRIRIDVTKPLKRGLEVKVGVMGEETWCPVTYEKLPDFCYRCRRIGHRKREC
        S+TK+MA I G+ +G+F KVD   L+  WG  + IRI +DVT+PL RG  +K+  + ++ W  + YEKLPD CY+C R+GH    C
Subjt:  SQTKMMARICGNRLGQFQKVDSFDLDFCWGNTLHIRIRIDVTKPLKRGLEVKVGVMGEETWCPVTYEKLPDFCYRCRRIGHRKREC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGCGTTTGGAAAGTTGGAGAGGAAGTTTTGGCAGGGGATGGGAAATTGGCGCCTTTAGTGCGATCTTATTTACAGATTTCAAGCATCACTATCCTTTCTTATATGGC
AAGGAAAATCTTCGAAATCCCCGAGCATTGGAGAGCTTTGGAATTCTGGCTGCTATTTAAAGGAATTTGGACCCTTCTTCTAAACACATCCTGGGCTAGTATTCACCTAA
TAATGGAATCAATTCAGTTAGGAATGTTGGTCGAGAAGCTGAAGCTCACCTCAGAAGAGAAACAAACAATTTTGGTTCCTGATGATGATATAGATGAAAGTCAGACTAAG
ATGATGGCACGGATATGTGGTAACCGACTAGGACAATTCCAAAAGGTGGACTCCTTCGATTTAGACTTCTGCTGGGGGAACACTCTTCACATCAGAATCAGGATTGATGT
TACAAAGCCATTGAAAAGAGGGTTGGAGGTGAAAGTCGGAGTGATGGGCGAGGAAACATGGTGTCCGGTGACCTACGAAAAGCTCCCGGATTTCTGTTACAGATGCAGGA
GAATTGGCCATAGAAAACGGGAATGCCCTTTCGAAGTTGATATTGATGCTGAGGGAAAGAAATTCGGACCTAGGCAACGAAGAGCAGAAGAGGGAGACTCGGAAGGGGAT
CCAAACCAAAGCCCCCCCTCAACCCCCTCGGTTCAGGCGAGCAGCGGTGGCTCACCGAAGATACAAAATAAGAAACCGAAAATGACCGGCGACAATGAATCAAGGAAGTT
TTCCGATGACTTTCAAATTATATTAAATGCTATTAACTTCTCAGCTACAACGACTACAAAGGAAGGAGATAAAGCGGGATTCAATGAGCATTTAAAGGCACCCCGAAAGA
TGAAGAAAGTTGTCGTTCAGGAGGTCACCAAAACGTTAGGGTTTGAGGAGTCAGTTTCGGATGGAAAGTACAAAAATGAAAAGAAGAGGGCGATCATTGAAAGAGACGGT
TGTGGGGCCCACACCAGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTGCGTTTGGAAAGTTGGAGAGGAAGTTTTGGCAGGGGATGGGAAATTGGCGCCTTTAGTGCGATCTTATTTACAGATTTCAAGCATCACTATCCTTTCTTATATGGC
AAGGAAAATCTTCGAAATCCCCGAGCATTGGAGAGCTTTGGAATTCTGGCTGCTATTTAAAGGAATTTGGACCCTTCTTCTAAACACATCCTGGGCTAGTATTCACCTAA
TAATGGAATCAATTCAGTTAGGAATGTTGGTCGAGAAGCTGAAGCTCACCTCAGAAGAGAAACAAACAATTTTGGTTCCTGATGATGATATAGATGAAAGTCAGACTAAG
ATGATGGCACGGATATGTGGTAACCGACTAGGACAATTCCAAAAGGTGGACTCCTTCGATTTAGACTTCTGCTGGGGGAACACTCTTCACATCAGAATCAGGATTGATGT
TACAAAGCCATTGAAAAGAGGGTTGGAGGTGAAAGTCGGAGTGATGGGCGAGGAAACATGGTGTCCGGTGACCTACGAAAAGCTCCCGGATTTCTGTTACAGATGCAGGA
GAATTGGCCATAGAAAACGGGAATGCCCTTTCGAAGTTGATATTGATGCTGAGGGAAAGAAATTCGGACCTAGGCAACGAAGAGCAGAAGAGGGAGACTCGGAAGGGGAT
CCAAACCAAAGCCCCCCCTCAACCCCCTCGGTTCAGGCGAGCAGCGGTGGCTCACCGAAGATACAAAATAAGAAACCGAAAATGACCGGCGACAATGAATCAAGGAAGTT
TTCCGATGACTTTCAAATTATATTAAATGCTATTAACTTCTCAGCTACAACGACTACAAAGGAAGGAGATAAAGCGGGATTCAATGAGCATTTAAAGGCACCCCGAAAGA
TGAAGAAAGTTGTCGTTCAGGAGGTCACCAAAACGTTAGGGTTTGAGGAGTCAGTTTCGGATGGAAAGTACAAAAATGAAAAGAAGAGGGCGATCATTGAAAGAGACGGT
TGTGGGGCCCACACCAGTTAG
Protein sequenceShow/hide protein sequence
MCVWKVGEEVLAGDGKLAPLVRSYLQISSITILSYMARKIFEIPEHWRALEFWLLFKGIWTLLLNTSWASIHLIMESIQLGMLVEKLKLTSEEKQTILVPDDDIDESQTK
MMARICGNRLGQFQKVDSFDLDFCWGNTLHIRIRIDVTKPLKRGLEVKVGVMGEETWCPVTYEKLPDFCYRCRRIGHRKRECPFEVDIDAEGKKFGPRQRRAEEGDSEGD
PNQSPPSTPSVQASSGGSPKIQNKKPKMTGDNESRKFSDDFQIILNAINFSATTTTKEGDKAGFNEHLKAPRKMKKVVVQEVTKTLGFEESVSDGKYKNEKKRAIIERDG
CGAHTS