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Tan0000350 (gene) of Snake gourd v1 genome

Gene IDTan0000350
OrganismTrichosanthes anguina (Snake gourd v1)
Descriptionextensin-like
Genome locationLG02:87899329..87899930
RNA-Seq ExpressionTan0000350
SyntenyTan0000350
Gene Ontology termsGO:0009664 - plant-type cell wall organization (biological process)
GO:0005199 - structural constituent of cell wall (molecular function)
InterPro domainsIPR006706 - Extensin domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GEV24930.1 putative extensin domain-containing protein [Tanacetum cinerariifolium]7.4e-0944.94Show/hide
Query:  YSHSSVAVATSFHHGRHHKSPPPPSAFLFLSPPPPARRFLKAPTPPSAFLFTSPPPPS-------PPSAFLFLSPPPPSAFLFTSPPPP
        Y H    +  S HH   +KSPPPPS +++ SPPPP+    K+P PP  +++ SPPPPS       PP  +++ SPPPPS +++ SPPPP
Subjt:  YSHSSVAVATSFHHGRHHKSPPPPSAFLFLSPPPPARRFLKAPTPPSAFLFTSPPPPS-------PPSAFLFLSPPPPSAFLFTSPPPP

GEX94851.1 extensin-2-like [Tanacetum cinerariifolium]1.8e-0750Show/hide
Query:  HKSPPPPSAFLFLSPPPPARRFLKAPTPPSAFLFTSPPP-------PSPPSAFLFLSPPPPSAFLFTSPPPP
        +KSPPPPS +++ SPPPP   + K+P PPS +++ SPPP       P PPS +++ SPPPPS +++ SPPPP
Subjt:  HKSPPPPSAFLFLSPPPPARRFLKAPTPPSAFLFTSPPP-------PSPPSAFLFLSPPPPSAFLFTSPPPP

KGN62573.1 hypothetical protein Csa_021860 [Cucumis sativus]1.4e-1558.88Show/hide
Query:  MKGLGLLFLLF--ILPLYSHSSV---AVATSFHHGRHHKSPPPPSAFLFLSPPPPARRFLKAPTPPSAFLFTSPPPPSPPSAFLFLSPPPPSAFLFTSPP
        M G+G LFLLF  +L  +SHSSV    +  S        SPPPPSAFL+LSPPPPARRFL+  +PP            PPSAFLFLSPPPPSAFL+TSPP
Subjt:  MKGLGLLFLLF--ILPLYSHSSV---AVATSFHHGRHHKSPPPPSAFLFLSPPPPARRFLKAPTPPSAFLFTSPPPPSPPSAFLFLSPPPPSAFLFTSPP

Query:  PPARPVE
        PPA  VE
Subjt:  PPARPVE

XP_023520927.1 extensin-like [Cucurbita pepo subsp. pepo]1.1e-1245.77Show/hide
Query:  FLLFILPLYSHSSVAVATSF----HHGR----------------HHKSP--------------------PPPSAFLFLSPPPPARRFLKAPTPPSAFLFT
        FLLFI  L+SH  +A+A S+    H GR                  KSP                    PPP AFLFLS PPP R F K+P PP+AFLF 
Subjt:  FLLFILPLYSHSSVAVATSF----HHGR----------------HHKSP--------------------PPPSAFLFLSPPPPARRFLKAPTPPSAFLFT

Query:  SPPPPS-------PPSAFLFLSPPPPSAFLFTSPPPPARPVE
        S  PPS       PP+AFLF SPPPP+AFLF SPPPP +P E
Subjt:  SPPPPS-------PPSAFLFLSPPPPSAFLFTSPPPPARPVE

XP_023909450.1 extensin-3-like [Quercus suber]1.1e-0944Show/hide
Query:  LGLLFLLFILPLYSHSS---VAVATSFHHGRH----HKS-----------------------PPPPSAFLFLSPPPPARRFLKAPTPPSAFLFTSPPPPS
        L  LF  F L LYS+ S   +++  S HHG H    H+S                       PPPPS+F F SPPPP+  +  +P PPS+F F SPP   
Subjt:  LGLLFLLFILPLYSHSS---VAVATSFHHGRH----HKS-----------------------PPPPSAFLFLSPPPPARRFLKAPTPPSAFLFTSPPPPS

Query:  PPSAFLFLSPPPPSAFLFTSPPPPA
        PPS+F F SPPPPS+F F SPPPP+
Subjt:  PPSAFLFLSPPPPSAFLFTSPPPPA

TrEMBL top hitse value%identityAlignment
A0A0A0L0P1 Uncharacterized protein1.3e-0638.18Show/hide
Query:  FILPLYSHSSVAVATSFHHG---------RHHKSPPP-------PSAFLFLSPPPPARRFLKAPTPPSAFLFTSPPPPS-------PPSAFLFLSPPPPS
        F LP + H S      +HH           HHK PPP       P ++++ SPPPP+    K+P PP  +++ SPPPPS       PP  +++ SPPPPS
Subjt:  FILPLYSHSSVAVATSFHHG---------RHHKSPPP-------PSAFLFLSPPPPARRFLKAPTPPSAFLFTSPPPPS-------PPSAFLFLSPPPPS

Query:  AFLFTSPPPP
         +++ SPPPP
Subjt:  AFLFTSPPPP

A0A0A0LLD7 Extensin_2 domain-containing protein6.7e-1658.88Show/hide
Query:  MKGLGLLFLLF--ILPLYSHSSV---AVATSFHHGRHHKSPPPPSAFLFLSPPPPARRFLKAPTPPSAFLFTSPPPPSPPSAFLFLSPPPPSAFLFTSPP
        M G+G LFLLF  +L  +SHSSV    +  S        SPPPPSAFL+LSPPPPARRFL+  +PP            PPSAFLFLSPPPPSAFL+TSPP
Subjt:  MKGLGLLFLLF--ILPLYSHSSV---AVATSFHHGRHHKSPPPPSAFLFLSPPPPARRFLKAPTPPSAFLFTSPPPPSPPSAFLFLSPPPPSAFLFTSPP

Query:  PPARPVE
        PPA  VE
Subjt:  PPARPVE

A0A1S2XBW5 extensin-2-like9.7e-0743.43Show/hide
Query:  YSHSSVAVATS---FHH----GRHHKSPPPPS-----AFLFLSPPPPARRFLKAPTPPSAFLFTSPPP--PSPPSAFLFLSPPPPSAFLFTSPPPPARP
        Y  SS A A S   +HH       +KSPPPPS      +++ SPPPP      +P+PP  +++ SPPP  PSPP  +++ SPPPPS +++ SPPPP+ P
Subjt:  YSHSSVAVATS---FHH----GRHHKSPPPPS-----AFLFLSPPPPARRFLKAPTPPSAFLFTSPPP--PSPPSAFLFLSPPPPSAFLFTSPPPPARP

A0A2U1N7J5 Extensin_2 domain-containing protein1.3e-0640.62Show/hide
Query:  PLYSHSSVAVATSFHHGRHH------------KSPPPPSAFLFLSPPPPARRFLKAPTPPSAFLFTSPPPPSPPSAFLFLSPPPPSAFLFTSPPPP
        P   H    V    H   HH            KSPPPPS + + SPPPP   + K+P PPS + + SPPPP     +++ SPPPPS +++ SPPPP
Subjt:  PLYSHSSVAVATSFHHGRHH------------KSPPPPSAFLFLSPPPPARRFLKAPTPPSAFLFTSPPPPSPPSAFLFLSPPPPSAFLFTSPPPP

A0A6P6FL24 extensin-2-like5.7e-0741.57Show/hide
Query:  HHKSPPPPSAFLFLSPPPPARRFLKAPTPPSAFLFTSPPPP--------SPPSAFLFLSP-----------PPPSAFLFTSPPPPARPV
        ++KSPPPP A+ + SPPPPA  +   P PP  + + SPPPP         PP A+++ SP           PPP A+++ SPPPP+ PV
Subjt:  HHKSPPPPSAFLFLSPPPPARRFLKAPTPPSAFLFTSPPPP--------SPPSAFLFLSP-----------PPPSAFLFTSPPPPARPV

SwissProt top hitse value%identityAlignment
O65375 Leucine-rich repeat extensin-like protein 13.0e-0540.85Show/hide
Query:  SPPPPSAFLFLSPPPPARRFLKAPTPPSAFLFTSPPPP-----SPPSAFLFLSPPPPSAFLFTSPPPPARP
        SP PP  +++ SPPPP   ++ +  PP  ++++SPPPP     SPP  +++ SPPPP  +    PPPP+ P
Subjt:  SPPPPSAFLFLSPPPPARRFLKAPTPPSAFLFTSPPPP-----SPPSAFLFLSPPPPSAFLFTSPPPPARP

Arabidopsis top hitse value%identityAlignment
AT1G12040.1 leucine-rich repeat/extensin 12.1e-0640.85Show/hide
Query:  SPPPPSAFLFLSPPPPARRFLKAPTPPSAFLFTSPPPP-----SPPSAFLFLSPPPPSAFLFTSPPPPARP
        SP PP  +++ SPPPP   ++ +  PP  ++++SPPPP     SPP  +++ SPPPP  +    PPPP+ P
Subjt:  SPPPPSAFLFLSPPPPARRFLKAPTPPSAFLFTSPPPP-----SPPSAFLFLSPPPPSAFLFTSPPPPARP

AT1G26240.1 Proline-rich extensin-like family protein4.8e-0634.91Show/hide
Query:  LLFILPLYS---HSSVAVATS--------FHHGRHHKSPPPPSAFLFLSPPPPARRFLKAPTPPSAFLFTSPPPP------SPPSAFLFLSPPPPSAFLF
        L+ ++ LYS   H+S     S        +    H  S PPP  +++ SPPPP   +   P PP  ++++SPPPP       PP  +++ SPPPP  +++
Subjt:  LLFILPLYS---HSSVAVATS--------FHHGRHHKSPPPPSAFLFLSPPPPARRFLKAPTPPSAFLFTSPPPP------SPPSAFLFLSPPPPSAFLF

Query:  TSPPPP
         SPPPP
Subjt:  TSPPPP

AT1G26250.1 Proline-rich extensin-like family protein2.1e-0644.12Show/hide
Query:  SPPPPSAFLFLSPPPPARRFLKAPTPPSAFLFTSPPPP-----SPPSAFLFLSPPPPSAFLFTSPPPP
        S PPP  +++ SPPPP   +   P PP  ++++SPPPP     SPP      SPPPP  +++ SPPPP
Subjt:  SPPPPSAFLFLSPPPPARRFLKAPTPPSAFLFTSPPPP-----SPPSAFLFLSPPPPSAFLFTSPPPP

AT2G43150.1 Proline-rich extensin-like family protein8.1e-0638.78Show/hide
Query:  PLYSHSSVAVATSFHHGRHHKSPP-----PPSAFLFLSPPPPARRFLKAPTPPSAFLFTSPPPP--SPPSAFLFLSPP-----PPSAFLFTSPPPPAR
        P Y HS      S     ++ SPP     PP  + + SPPPP    +K+P PP  + + SPPPP  SPP  + + SPP     PP  +L++SPPPP +
Subjt:  PLYSHSSVAVATSFHHGRHHKSPP-----PPSAFLFLSPPPPARRFLKAPTPPSAFLFTSPPPP--SPPSAFLFLSPP-----PPSAFLFTSPPPPAR

AT4G08370.1 Proline-rich extensin-like family protein1.3e-0644.78Show/hide
Query:  PPPSAFLFLSPPPPARRFLKAPTPPSAFLFTSPPPP------SPPSAFLFLSPPPPSAFLFTSPPPP
        PPPS +L+ SPPPP   +  +P PP  +++ SPP P       PP  F++ SPPPP+ +++ SPPPP
Subjt:  PPPSAFLFLSPPPPARRFLKAPTPPSAFLFTSPPPP------SPPSAFLFLSPPPPSAFLFTSPPPP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAGGTTTAGGGTTATTGTTTCTTCTATTCATTCTGCCTCTTTACTCTCATTCATCTGTTGCTGTTGCCACATCCTTTCACCATGGCCGTCACCACAAATCTCCGCC
GCCTCCATCTGCCTTCCTCTTCCTCTCTCCGCCGCCTCCTGCGCGTCGCTTCTTAAAAGCTCCGACGCCTCCTTCTGCGTTCCTCTTCACCTCTCCGCCGCCTCCCAGTC
CTCCGTCTGCGTTTCTCTTCCTCTCTCCGCCGCCTCCGTCTGCGTTTCTCTTCACCTCTCCACCTCCTCCGGCGCGGCCGGTGGAGTGA
mRNA sequenceShow/hide mRNA sequence
AAAGAAAAGAAAAAAGAAAAAAGAAAAAGAAAATGAAAGGTTTAGGGTTATTGTTTCTTCTATTCATTCTGCCTCTTTACTCTCATTCATCTGTTGCTGTTGCCACATCC
TTTCACCATGGCCGTCACCACAAATCTCCGCCGCCTCCATCTGCCTTCCTCTTCCTCTCTCCGCCGCCTCCTGCGCGTCGCTTCTTAAAAGCTCCGACGCCTCCTTCTGC
GTTCCTCTTCACCTCTCCGCCGCCTCCCAGTCCTCCGTCTGCGTTTCTCTTCCTCTCTCCGCCGCCTCCGTCTGCGTTTCTCTTCACCTCTCCACCTCCTCCGGCGCGGC
CGGTGGAGTGACTGTACGGCTGATCAACTACGCCGGAGATGAGAAACTAAATGGCGAGGGGGAGATTTATTCCTTGGATCAGTGATGGGCTTGTTTAAGCCCATTAGTAA
CACAGAAATCTAAATTTAAAGTTGTGATGCAAAAACACAGAAATATAAATTGTAAGTTTATTTACGTACTTTTTTTCTTCCCATTTTGTTTGGTTTTGTTTCCCATATAA
TACTTAAACTTGGGTCTTCAAACCACCCGAGGATCCAGAATTTGTATCGAGG
Protein sequenceShow/hide protein sequence
MKGLGLLFLLFILPLYSHSSVAVATSFHHGRHHKSPPPPSAFLFLSPPPPARRFLKAPTPPSAFLFTSPPPPSPPSAFLFLSPPPPSAFLFTSPPPPARPVE