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Tan0000391 (gene) of Snake gourd v1 genome

Gene IDTan0000391
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionReverse transcriptase
Genome locationLG09:5271384..5273523
RNA-Seq ExpressionTan0000391
SyntenyTan0000391
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037805.1 uncharacterized protein E6C27_scaffold918G00190 [Cucumis melo var. makuwa]5.5e-1658.14Show/hide
Query:  ELAKHGPSIDKSNQYDFKNRAGGQASRQMHVSGAYQRQSQRAPSQSARSTARPQTLQESVASVERRTSCSNCGKNHRGQCLVGVNV
        E  +  P I+ S++ DFKNR+GGQASR +     +QRQSQR PSQ  RST R Q  QES+AS  RRT C++CG+NHRGQCLVG  V
Subjt:  ELAKHGPSIDKSNQYDFKNRAGGQASRQMHVSGAYQRQSQRAPSQSARSTARPQTLQESVASVERRTSCSNCGKNHRGQCLVGVNV

KAA0038417.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]1.9e-1659.3Show/hide
Query:  ELAKHGPSIDKSNQYDFKNRAGGQASRQMHVSGAYQRQSQRAPSQSARSTARPQTLQESVASVERRTSCSNCGKNHRGQCLVGVNV
        E  +  P I+ S++ DFKNR+GGQASR +     +QRQSQR PSQ  RST R Q  QESVAS  R+T C++CG+NHRGQCLVGV V
Subjt:  ELAKHGPSIDKSNQYDFKNRAGGQASRQMHVSGAYQRQSQRAPSQSARSTARPQTLQESVASVERRTSCSNCGKNHRGQCLVGVNV

KAA0042138.1 uncharacterized protein E6C27_scaffold67G006260 [Cucumis melo var. makuwa]5.9e-1861.63Show/hide
Query:  ELAKHGPSIDKSNQYDFKNRAGGQASRQMHVSGAYQRQSQRAPSQSARSTARPQTLQESVASVERRTSCSNCGKNHRGQCLVGVNV
        E  K  P I+ S++ DFKNR+GGQASR +     +QRQSQR PSQ  RST R Q  QES+AS  RRTSC+NCG+NHRGQCLVG +V
Subjt:  ELAKHGPSIDKSNQYDFKNRAGGQASRQMHVSGAYQRQSQRAPSQSARSTARPQTLQESVASVERRTSCSNCGKNHRGQCLVGVNV

KAA0053247.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]7.2e-1656.98Show/hide
Query:  ELAKHGPSIDKSNQYDFKNRAGGQASRQMHVSGAYQRQSQRAPSQSARSTARPQTLQESVASVERRTSCSNCGKNHRGQCLVGVNV
        E  +  P I+ S++ DFKNR+GG+ASR M     +QRQSQ  PSQ  RST R Q  QES+AS+ RRT C++CG+NHRGQCLVG  V
Subjt:  ELAKHGPSIDKSNQYDFKNRAGGQASRQMHVSGAYQRQSQRAPSQSARSTARPQTLQESVASVERRTSCSNCGKNHRGQCLVGVNV

KAA0066282.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.2e-1556.98Show/hide
Query:  ELAKHGPSIDKSNQYDFKNRAGGQASRQMHVSGAYQRQSQRAPSQSARSTARPQTLQESVASVERRTSCSNCGKNHRGQCLVGVNV
        E  +  P I+ S++ DFKNR+GGQASR +     +QRQSQR PSQ  RST R Q  QES+AS  RR  C++CG+NHRGQCLVG +V
Subjt:  ELAKHGPSIDKSNQYDFKNRAGGQASRQMHVSGAYQRQSQRAPSQSARSTARPQTLQESVASVERRTSCSNCGKNHRGQCLVGVNV

TrEMBL top hitse value%identityAlignment
A0A5A7T8K4 Retrotrans_gag domain-containing protein2.7e-1658.14Show/hide
Query:  ELAKHGPSIDKSNQYDFKNRAGGQASRQMHVSGAYQRQSQRAPSQSARSTARPQTLQESVASVERRTSCSNCGKNHRGQCLVGVNV
        E  +  P I+ S++ DFKNR+GGQASR +     +QRQSQR PSQ  RST R Q  QES+AS  RRT C++CG+NHRGQCLVG  V
Subjt:  ELAKHGPSIDKSNQYDFKNRAGGQASRQMHVSGAYQRQSQRAPSQSARSTARPQTLQESVASVERRTSCSNCGKNHRGQCLVGVNV

A0A5A7TA17 Putative gag-pol polyprotein9.1e-1759.3Show/hide
Query:  ELAKHGPSIDKSNQYDFKNRAGGQASRQMHVSGAYQRQSQRAPSQSARSTARPQTLQESVASVERRTSCSNCGKNHRGQCLVGVNV
        E  +  P I+ S++ DFKNR+GGQASR +     +QRQSQR PSQ  RST R Q  QESVAS  R+T C++CG+NHRGQCLVGV V
Subjt:  ELAKHGPSIDKSNQYDFKNRAGGQASRQMHVSGAYQRQSQRAPSQSARSTARPQTLQESVASVERRTSCSNCGKNHRGQCLVGVNV

A0A5A7TH36 CCHC-type domain-containing protein2.8e-1861.63Show/hide
Query:  ELAKHGPSIDKSNQYDFKNRAGGQASRQMHVSGAYQRQSQRAPSQSARSTARPQTLQESVASVERRTSCSNCGKNHRGQCLVGVNV
        E  K  P I+ S++ DFKNR+GGQASR +     +QRQSQR PSQ  RST R Q  QES+AS  RRTSC+NCG+NHRGQCLVG +V
Subjt:  ELAKHGPSIDKSNQYDFKNRAGGQASRQMHVSGAYQRQSQRAPSQSARSTARPQTLQESVASVERRTSCSNCGKNHRGQCLVGVNV

A0A5A7UFH6 DNA/RNA polymerases superfamily protein3.5e-1656.98Show/hide
Query:  ELAKHGPSIDKSNQYDFKNRAGGQASRQMHVSGAYQRQSQRAPSQSARSTARPQTLQESVASVERRTSCSNCGKNHRGQCLVGVNV
        E  +  P I+ S++ DFKNR+GG+ASR M     +QRQSQ  PSQ  RST R Q  QES+AS+ RRT C++CG+NHRGQCLVG  V
Subjt:  ELAKHGPSIDKSNQYDFKNRAGGQASRQMHVSGAYQRQSQRAPSQSARSTARPQTLQESVASVERRTSCSNCGKNHRGQCLVGVNV

A0A5A7VD61 Reverse transcriptase5.9e-1656.98Show/hide
Query:  ELAKHGPSIDKSNQYDFKNRAGGQASRQMHVSGAYQRQSQRAPSQSARSTARPQTLQESVASVERRTSCSNCGKNHRGQCLVGVNV
        E  +  P I+ S++ DFKNR+GGQASR +     +QRQSQR PSQ  RST R Q  QES+AS  RR  C++CG+NHRGQCLVG +V
Subjt:  ELAKHGPSIDKSNQYDFKNRAGGQASRQMHVSGAYQRQSQRAPSQSARSTARPQTLQESVASVERRTSCSNCGKNHRGQCLVGVNV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGAGACATTGAGCCCGAGGCTATATAGTATCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGAAAACCTGCCATATTCAATAGAACTAGCAAAGCATGG
TCCAAGTATAGATAAGAGTAATCAATATGACTTTAAAAATCGAGCTGGCGGCCAGGCATCGAGGCAGATGCATGTGAGTGGTGCCTATCAGAGGCAGAGTCAAAGAGCAC
CTAGTCAATCTGCCAGATCCACAGCAAGACCACAGACATTGCAGGAGTCTGTTGCTAGTGTAGAAAGGAGAACTTCATGTTCAAATTGTGGCAAGAATCATCGAGGCCAA
TGTCTTGTTGGTGTCAATGTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGACTGAGACATTGAGCCCGAGGCTATATAGTATCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGAAAACCTGCCATATTCAATAGAACTAGCAAAGCATGG
TCCAAGTATAGATAAGAGTAATCAATATGACTTTAAAAATCGAGCTGGCGGCCAGGCATCGAGGCAGATGCATGTGAGTGGTGCCTATCAGAGGCAGAGTCAAAGAGCAC
CTAGTCAATCTGCCAGATCCACAGCAAGACCACAGACATTGCAGGAGTCTGTTGCTAGTGTAGAAAGGAGAACTTCATGTTCAAATTGTGGCAAGAATCATCGAGGCCAA
TGTCTTGTTGGTGTCAATGTGTGA
Protein sequenceShow/hide protein sequence
MTETLSPRLYSIVCTQVEIELPVPENLPYSIELAKHGPSIDKSNQYDFKNRAGGQASRQMHVSGAYQRQSQRAPSQSARSTARPQTLQESVASVERRTSCSNCGKNHRGQ
CLVGVNV