CuGenDBv2

Gene ID	Tan0000410
Organism	Trichosanthes anguina (Snake gourd v1)
Description	SWIM-type domain-containing protein
Genome location	LG03:56428620..56429131
RNA-Seq Expression	Tan0000410
Synteny	Tan0000410
Gene Ontology terms	GO:0009987 - cellular process (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR001878 - Zinc finger, CCHC-type IPR006564 - Zinc finger, PMZ-type IPR007527 - Zinc finger, SWIM-type IPR036875 - Zinc finger, CCHC-type superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0035755.1 uncharacterized protein E6C27_scaffold403G00270 [Cucumis melo var. makuwa]

6.5e-27

44.2

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Query:  MDIYPINHAEFEVHNQYGRFEVNINDQTCTCKRWTLDLIPCPHACLAIGRWELPLHSFVHEFYHNTTVKKLYSGDVRPIGMSHHHIGARMDTDILVHPPI
        M+IYP++  EFEVH++  +F VNI ++TC+C++W LDLIPC HAC+A+    L LH +  +FY+ + +  LY    RPIG  +         +  + PP 
Subjt:  MDIYPINHAEFEVHNQYGRFEVNINDQTCTCKRWTLDLIPCPHACLAIGRWELPLHSFVHEFYHNTTVKKLYSGDVRPIGMSHHHIGARMDTDILVHPPI

Query:  LKRNAGRPRKKRMKSHRERKQTLKCGRCGQTGHNRRRC
        +KR AGRP+KKR  S  E+K +++C RCG+ GHN R C
Subjt:  LKRNAGRPRKKRMKSHRERKQTLKCGRCGQTGHNRRRC

KAA0047595.1 uncharacterized protein E6C27_scaffold115G00630 [Cucumis melo var. makuwa]

1.9e-26

44.2

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Query:  MDIYPINHAEFEVHNQYGRFEVNINDQTCTCKRWTLDLIPCPHACLAIGRWELPLHSFVHEFYHNTTVKKLYSGDVRPIGMSHHHIGARMDTDILVHPPI
        M+IYP++  EFEVH+   +F VNI ++TC+C++W LDLIPC HAC+A+    L LH + ++FY+ + +  LY    RPIG  +         +  + PP 
Subjt:  MDIYPINHAEFEVHNQYGRFEVNINDQTCTCKRWTLDLIPCPHACLAIGRWELPLHSFVHEFYHNTTVKKLYSGDVRPIGMSHHHIGARMDTDILVHPPI

Query:  LKRNAGRPRKKRMKSHRERKQTLKCGRCGQTGHNRRRC
        +KR AGRP+KKR  S  E+K +++C RCG+ GHN R C
Subjt:  LKRNAGRPRKKRMKSHRERKQTLKCGRCGQTGHNRRRC

TYK09853.1 uncharacterized protein E5676_scaffold39G00210 [Cucumis melo var. makuwa]

6.5e-27

44.2

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Query:  MDIYPINHAEFEVHNQYGRFEVNINDQTCTCKRWTLDLIPCPHACLAIGRWELPLHSFVHEFYHNTTVKKLYSGDVRPIGMSHHHIGARMDTDILVHPPI
        M+IYP++  EFEVH++  +F VNI ++TC+C++W LDLIPC HAC+A+    L LH +  +FY+ + +  LY    RPIG  +         +  + PP 
Subjt:  MDIYPINHAEFEVHNQYGRFEVNINDQTCTCKRWTLDLIPCPHACLAIGRWELPLHSFVHEFYHNTTVKKLYSGDVRPIGMSHHHIGARMDTDILVHPPI

Query:  LKRNAGRPRKKRMKSHRERKQTLKCGRCGQTGHNRRRC
        +KR AGRP+KKR  S  E+K +++C RCG+ GHN R C
Subjt:  LKRNAGRPRKKRMKSHRERKQTLKCGRCGQTGHNRRRC

XP_008442298.1 PREDICTED: uncharacterized protein LOC103486212 [Cucumis melo]

6.5e-27

44.2

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Query:  MDIYPINHAEFEVHNQYGRFEVNINDQTCTCKRWTLDLIPCPHACLAIGRWELPLHSFVHEFYHNTTVKKLYSGDVRPIGMSHHHIGARMDTDILVHPPI
        M+IYP++  EFEVH++  +F VNI ++TC+C++W LDLIPC HAC+A+    L LH +  +FY+ + +  LY    RPIG  +         +  + PP 
Subjt:  MDIYPINHAEFEVHNQYGRFEVNINDQTCTCKRWTLDLIPCPHACLAIGRWELPLHSFVHEFYHNTTVKKLYSGDVRPIGMSHHHIGARMDTDILVHPPI

Query:  LKRNAGRPRKKRMKSHRERKQTLKCGRCGQTGHNRRRC
        +KR AGRP+KKR  S  E+K +++C RCG+ GHN R C
Subjt:  LKRNAGRPRKKRMKSHRERKQTLKCGRCGQTGHNRRRC

XP_022157216.1 uncharacterized protein LOC111023978 [Momordica charantia]

6.7e-32

52.17

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Query:  MDIYPINHAEFEVHNQYGRFEVNINDQTCTCKRWTLDLIPCPHACLAIGRWELPLHSFVHEFYHNTTVKKLYSGDVRPIGMSHHHIGARMDTDILVHPPI
        MDIYP++   ++VHN    F VNI   TC  K+W +D IPC HACLAI R  L LHSFVH+FYH  T++ LYS +V PIG   + +      D  + PP 
Subjt:  MDIYPINHAEFEVHNQYGRFEVNINDQTCTCKRWTLDLIPCPHACLAIGRWELPLHSFVHEFYHNTTVKKLYSGDVRPIGMSHHHIGARMDTDILVHPPI

Query:  LKRNAGRPRKKRMKSHRERKQTLKCGRCGQTGHNRRRC
        +KR+AGRPRKKR+ S  E   T++CGRC + GHNRRRC
Subjt:  LKRNAGRPRKKRMKSHRERKQTLKCGRCGQTGHNRRRC

TrEMBL top hits

e value

%identity

Alignment

A0A1S3B5C9 uncharacterized protein LOC103486212

3.1e-27

44.2

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Query:  MDIYPINHAEFEVHNQYGRFEVNINDQTCTCKRWTLDLIPCPHACLAIGRWELPLHSFVHEFYHNTTVKKLYSGDVRPIGMSHHHIGARMDTDILVHPPI
        M+IYP++  EFEVH++  +F VNI ++TC+C++W LDLIPC HAC+A+    L LH +  +FY+ + +  LY    RPIG  +         +  + PP 
Subjt:  MDIYPINHAEFEVHNQYGRFEVNINDQTCTCKRWTLDLIPCPHACLAIGRWELPLHSFVHEFYHNTTVKKLYSGDVRPIGMSHHHIGARMDTDILVHPPI

Query:  LKRNAGRPRKKRMKSHRERKQTLKCGRCGQTGHNRRRC
        +KR AGRP+KKR  S  E+K +++C RCG+ GHN R C
Subjt:  LKRNAGRPRKKRMKSHRERKQTLKCGRCGQTGHNRRRC

A0A5A7T2S1 Uncharacterized protein

3.1e-27

44.2

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Query:  MDIYPINHAEFEVHNQYGRFEVNINDQTCTCKRWTLDLIPCPHACLAIGRWELPLHSFVHEFYHNTTVKKLYSGDVRPIGMSHHHIGARMDTDILVHPPI
        M+IYP++  EFEVH++  +F VNI ++TC+C++W LDLIPC HAC+A+    L LH +  +FY+ + +  LY    RPIG  +         +  + PP 
Subjt:  MDIYPINHAEFEVHNQYGRFEVNINDQTCTCKRWTLDLIPCPHACLAIGRWELPLHSFVHEFYHNTTVKKLYSGDVRPIGMSHHHIGARMDTDILVHPPI

Query:  LKRNAGRPRKKRMKSHRERKQTLKCGRCGQTGHNRRRC
        +KR AGRP+KKR  S  E+K +++C RCG+ GHN R C
Subjt:  LKRNAGRPRKKRMKSHRERKQTLKCGRCGQTGHNRRRC

A0A5A7U1T3 Uncharacterized protein

9.2e-27

44.2

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Query:  MDIYPINHAEFEVHNQYGRFEVNINDQTCTCKRWTLDLIPCPHACLAIGRWELPLHSFVHEFYHNTTVKKLYSGDVRPIGMSHHHIGARMDTDILVHPPI
        M+IYP++  EFEVH+   +F VNI ++TC+C++W LDLIPC HAC+A+    L LH + ++FY+ + +  LY    RPIG  +         +  + PP 
Subjt:  MDIYPINHAEFEVHNQYGRFEVNINDQTCTCKRWTLDLIPCPHACLAIGRWELPLHSFVHEFYHNTTVKKLYSGDVRPIGMSHHHIGARMDTDILVHPPI

Query:  LKRNAGRPRKKRMKSHRERKQTLKCGRCGQTGHNRRRC
        +KR AGRP+KKR  S  E+K +++C RCG+ GHN R C
Subjt:  LKRNAGRPRKKRMKSHRERKQTLKCGRCGQTGHNRRRC

A0A5D3CDB8 Uncharacterized protein

3.1e-27

44.2

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Query:  MDIYPINHAEFEVHNQYGRFEVNINDQTCTCKRWTLDLIPCPHACLAIGRWELPLHSFVHEFYHNTTVKKLYSGDVRPIGMSHHHIGARMDTDILVHPPI
        M+IYP++  EFEVH++  +F VNI ++TC+C++W LDLIPC HAC+A+    L LH +  +FY+ + +  LY    RPIG  +         +  + PP 
Subjt:  MDIYPINHAEFEVHNQYGRFEVNINDQTCTCKRWTLDLIPCPHACLAIGRWELPLHSFVHEFYHNTTVKKLYSGDVRPIGMSHHHIGARMDTDILVHPPI

Query:  LKRNAGRPRKKRMKSHRERKQTLKCGRCGQTGHNRRRC
        +KR AGRP+KKR  S  E+K +++C RCG+ GHN R C
Subjt:  LKRNAGRPRKKRMKSHRERKQTLKCGRCGQTGHNRRRC

A0A6J1DXB4 uncharacterized protein LOC111023978

3.3e-32

52.17

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Query:  MDIYPINHAEFEVHNQYGRFEVNINDQTCTCKRWTLDLIPCPHACLAIGRWELPLHSFVHEFYHNTTVKKLYSGDVRPIGMSHHHIGARMDTDILVHPPI
        MDIYP++   ++VHN    F VNI   TC  K+W +D IPC HACLAI R  L LHSFVH+FYH  T++ LYS +V PIG   + +      D  + PP 
Subjt:  MDIYPINHAEFEVHNQYGRFEVNINDQTCTCKRWTLDLIPCPHACLAIGRWELPLHSFVHEFYHNTTVKKLYSGDVRPIGMSHHHIGARMDTDILVHPPI

Query:  LKRNAGRPRKKRMKSHRERKQTLKCGRCGQTGHNRRRC
        +KR+AGRPRKKR+ S  E   T++CGRC + GHNRRRC
Subjt:  LKRNAGRPRKKRMKSHRERKQTLKCGRCGQTGHNRRRC

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGATATATACCCCATAAATCATGCTGAATTCGAAGTCCACAACCAATATGGAAGGTTTGAAGTTAACATTAATGATCAAACGTGTACGTGCAAACGGTGGACGCTCGA
TCTCATCCCATGCCCTCATGCATGTCTTGCCATTGGTCGGTGGGAGTTGCCTTTACACTCATTTGTCCATGAGTTCTACCATAACACGACTGTCAAAAAACTTTATAGTG
GAGATGTGCGCCCTATTGGCATGTCTCATCATCACATTGGAGCACGCATGGATACTGACATTTTAGTTCACCCACCTATTCTTAAACGCAATGCTGGAAGACCAAGGAAA
AAAAGGATGAAGTCGCATAGGGAACGGAAGCAAACCCTAAAGTGTGGCAGGTGTGGACAAACAGGCCACAATCGACGGCGTTGCACTAGCCTAAGTTCCAAATGA

mRNA sequence

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Protein sequence

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MDIYPINHAEFEVHNQYGRFEVNINDQTCTCKRWTLDLIPCPHACLAIGRWELPLHSFVHEFYHNTTVKKLYSGDVRPIGMSHHHIGARMDTDILVHPPILKRNAGRPRK
KRMKSHRERKQTLKCGRCGQTGHNRRRCTSLSSK

Tan0000410 (gene) of Snake gourd v1 genome