CuGenDBv2

Gene ID	Tan0000430
Organism	Trichosanthes anguina (Snake gourd v1)
Description	DNA-directed RNA polymerase subunit beta
Genome location	LG01:101587291..101590535
RNA-Seq Expression	Tan0000430
Synteny	Tan0000430
Gene Ontology terms	NA
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004136341.2 uncharacterized protein LOC101205248 isoform X1 [Cucumis sativus]

1.5e-109

95.59

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Query:  MSCCSSLSAAPSSMSLISKRKFTSSVNKPVIVSMNSRFRASAEVPDFLPADWHEAYKKNPLGPSLHFTAEEAIQHQLDALRYNDRPHPDYGIEVMYQFAG
        MSCCSSLSAAPSSMSLI+ RKFTSSVNKP+IVSMNSRFRASAEVPDFLPADWH+A+KK+P+GP LHFTAEEAIQHQLDALRYNDRPH DYGIEVMYQFAG
Subjt:  MSCCSSLSAAPSSMSLISKRKFTSSVNKPVIVSMNSRFRASAEVPDFLPADWHEAYKKNPLGPSLHFTAEEAIQHQLDALRYNDRPHPDYGIEVMYQFAG

Query:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
        FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
Subjt:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG

Query:  GLAY
        GLAY
Subjt:  GLAY

XP_008466381.1 PREDICTED: uncharacterized protein LOC103503805 [Cucumis melo]

7.4e-109

95.1

Show/hide

Query:  MSCCSSLSAAPSSMSLISKRKFTSSVNKPVIVSMNSRFRASAEVPDFLPADWHEAYKKNPLGPSLHFTAEEAIQHQLDALRYNDRPHPDYGIEVMYQFAG
        MSCCSSLSAAPSSMSLI+ RKFTSSVNKPV VSMNSRFR SAEVPDFLPADWH+A+KK+P+GP LHFTAEEAIQHQLDALRYNDRPH DYGIEVMYQFAG
Subjt:  MSCCSSLSAAPSSMSLISKRKFTSSVNKPVIVSMNSRFRASAEVPDFLPADWHEAYKKNPLGPSLHFTAEEAIQHQLDALRYNDRPHPDYGIEVMYQFAG

Query:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
        FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
Subjt:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG

Query:  GLAY
        GLAY
Subjt:  GLAY

XP_022132533.1 uncharacterized protein LOC111005365 isoform X1 [Momordica charantia]

3.1e-107

94.12

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Query:  MSCCSSLSAAPSSMSLISKRKFTSSVNKPVIVSMNSRFRASAEVPDFLPADWHEAYKKNPLGPSLHFTAEEAIQHQLDALRYNDRPHPDYGIEVMYQFAG
        MSCCSSLSAAP+SMSLI+KRKF  +V+KP IVSMNSRFRASAEVPDFLPADW+EA+KKNPLGPSLHFTAEEAIQHQLDALRYND+PH DYGIEVMYQFAG
Subjt:  MSCCSSLSAAPSSMSLISKRKFTSSVNKPVIVSMNSRFRASAEVPDFLPADWHEAYKKNPLGPSLHFTAEEAIQHQLDALRYNDRPHPDYGIEVMYQFAG

Query:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
        FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILS LFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
Subjt:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG

Query:  GLAY
        GLAY
Subjt:  GLAY

XP_022981205.1 uncharacterized protein LOC111480415 isoform X1 [Cucurbita maxima]

3.1e-107

94.61

Show/hide

Query:  MSCCSSLSAAPSSMSLISKRKFTSSVNKPVIVSMNSRFRASAEVPDFLPADWHEAYKKNPLGPSLHFTAEEAIQHQLDALRYNDRPHPDYGIEVMYQFAG
        MSCCSSLSAAP+SMSLISKRKFT SVNK VIVSMNSRFRASAEVPDFLPADWH+A+KKNPLGPSLHFTAEEAIQ QLDALRYNDRPH DYGIEVMYQFAG
Subjt:  MSCCSSLSAAPSSMSLISKRKFTSSVNKPVIVSMNSRFRASAEVPDFLPADWHEAYKKNPLGPSLHFTAEEAIQHQLDALRYNDRPHPDYGIEVMYQFAG

Query:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
        F+PL+RSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSL VEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTES+LNDGDAFSG
Subjt:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG

Query:  GLAY
        GLAY
Subjt:  GLAY

XP_038898556.1 uncharacterized protein LOC120086152 [Benincasa hispida]

8.1e-108

94.61

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Query:  MSCCSSLSAAPSSMSLISKRKFTSSVNKPVIVSMNSRFRASAEVPDFLPADWHEAYKKNPLGPSLHFTAEEAIQHQLDALRYNDRPHPDYGIEVMYQFAG
        MSCCSSLSAAP+SMSLI+ RKFTSSVNKPVIVSM SRFRASAEVPDFLPADWH+A+KK+P+GP LHFTAEEAIQHQLDALRYNDRPH DYGIEVMYQFAG
Subjt:  MSCCSSLSAAPSSMSLISKRKFTSSVNKPVIVSMNSRFRASAEVPDFLPADWHEAYKKNPLGPSLHFTAEEAIQHQLDALRYNDRPHPDYGIEVMYQFAG

Query:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
        FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEEN FKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
Subjt:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG

Query:  GLAY
        GLAY
Subjt:  GLAY

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LED5 Uncharacterized protein

7.2e-110

95.59

Show/hide

Query:  MSCCSSLSAAPSSMSLISKRKFTSSVNKPVIVSMNSRFRASAEVPDFLPADWHEAYKKNPLGPSLHFTAEEAIQHQLDALRYNDRPHPDYGIEVMYQFAG
        MSCCSSLSAAPSSMSLI+ RKFTSSVNKP+IVSMNSRFRASAEVPDFLPADWH+A+KK+P+GP LHFTAEEAIQHQLDALRYNDRPH DYGIEVMYQFAG
Subjt:  MSCCSSLSAAPSSMSLISKRKFTSSVNKPVIVSMNSRFRASAEVPDFLPADWHEAYKKNPLGPSLHFTAEEAIQHQLDALRYNDRPHPDYGIEVMYQFAG

Query:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
        FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
Subjt:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG

Query:  GLAY
        GLAY
Subjt:  GLAY

A0A1S3CR52 uncharacterized protein LOC103503805

3.6e-109

95.1

Show/hide

Query:  MSCCSSLSAAPSSMSLISKRKFTSSVNKPVIVSMNSRFRASAEVPDFLPADWHEAYKKNPLGPSLHFTAEEAIQHQLDALRYNDRPHPDYGIEVMYQFAG
        MSCCSSLSAAPSSMSLI+ RKFTSSVNKPV VSMNSRFR SAEVPDFLPADWH+A+KK+P+GP LHFTAEEAIQHQLDALRYNDRPH DYGIEVMYQFAG
Subjt:  MSCCSSLSAAPSSMSLISKRKFTSSVNKPVIVSMNSRFRASAEVPDFLPADWHEAYKKNPLGPSLHFTAEEAIQHQLDALRYNDRPHPDYGIEVMYQFAG

Query:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
        FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
Subjt:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG

Query:  GLAY
        GLAY
Subjt:  GLAY

A0A5D3E6H6 Uncharacterized protein

3.6e-109

95.1

Show/hide

Query:  MSCCSSLSAAPSSMSLISKRKFTSSVNKPVIVSMNSRFRASAEVPDFLPADWHEAYKKNPLGPSLHFTAEEAIQHQLDALRYNDRPHPDYGIEVMYQFAG
        MSCCSSLSAAPSSMSLI+ RKFTSSVNKPV VSMNSRFR SAEVPDFLPADWH+A+KK+P+GP LHFTAEEAIQHQLDALRYNDRPH DYGIEVMYQFAG
Subjt:  MSCCSSLSAAPSSMSLISKRKFTSSVNKPVIVSMNSRFRASAEVPDFLPADWHEAYKKNPLGPSLHFTAEEAIQHQLDALRYNDRPHPDYGIEVMYQFAG

Query:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
        FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
Subjt:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG

Query:  GLAY
        GLAY
Subjt:  GLAY

A0A6J1BWI6 uncharacterized protein LOC111005365 isoform X1

1.5e-107

94.12

Show/hide

Query:  MSCCSSLSAAPSSMSLISKRKFTSSVNKPVIVSMNSRFRASAEVPDFLPADWHEAYKKNPLGPSLHFTAEEAIQHQLDALRYNDRPHPDYGIEVMYQFAG
        MSCCSSLSAAP+SMSLI+KRKF  +V+KP IVSMNSRFRASAEVPDFLPADW+EA+KKNPLGPSLHFTAEEAIQHQLDALRYND+PH DYGIEVMYQFAG
Subjt:  MSCCSSLSAAPSSMSLISKRKFTSSVNKPVIVSMNSRFRASAEVPDFLPADWHEAYKKNPLGPSLHFTAEEAIQHQLDALRYNDRPHPDYGIEVMYQFAG

Query:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
        FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILS LFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
Subjt:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG

Query:  GLAY
        GLAY
Subjt:  GLAY

A0A6J1IYU2 uncharacterized protein LOC111480415 isoform X1

1.5e-107

94.61

Show/hide

Query:  MSCCSSLSAAPSSMSLISKRKFTSSVNKPVIVSMNSRFRASAEVPDFLPADWHEAYKKNPLGPSLHFTAEEAIQHQLDALRYNDRPHPDYGIEVMYQFAG
        MSCCSSLSAAP+SMSLISKRKFT SVNK VIVSMNSRFRASAEVPDFLPADWH+A+KKNPLGPSLHFTAEEAIQ QLDALRYNDRPH DYGIEVMYQFAG
Subjt:  MSCCSSLSAAPSSMSLISKRKFTSSVNKPVIVSMNSRFRASAEVPDFLPADWHEAYKKNPLGPSLHFTAEEAIQHQLDALRYNDRPHPDYGIEVMYQFAG

Query:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
        F+PL+RSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSL VEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTES+LNDGDAFSG
Subjt:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG

Query:  GLAY
        GLAY
Subjt:  GLAY

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G25605.1 unknown protein

2.5e-78

77.58

Show/hide

Query:  ASAEVPDFLPADWHEAYKKNPLGPSLHFTAEEAIQHQLDALRYNDRPHPDYGIEVMYQFAGFDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKE
        +S++VPDFL ADW E+ +K P GP L F+AE+A++HQLDAL+YND P  DYGIEVMY+FAGFDP  RSTYFGPFFDLGQFERFRR+FHHS+YRVLLGHK+
Subjt:  ASAEVPDFLPADWHEAYKKNPLGPSLHFTAEEAIQHQLDALRYNDRPHPDYGIEVMYQFAGFDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKE

Query:  RKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSGGLAY
        RK+LSSLFVEENRFKQR+WI+G RP+EEEIF+FTM QR+GGSWDGYWLTESLL+DGD FSGG+AY
Subjt:  RKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSGGLAY

Sequences

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CDS sequence

Show/hide CDS sequence

ATGTCATGTTGTTCGTCCTTATCAGCGGCTCCTTCATCCATGTCTTTGATTTCCAAGCGCAAATTCACGAGTTCTGTCAATAAACCGGTGATCGTTTCCATGAATTCTCG
CTTCAGAGCTTCTGCAGAAGTTCCCGATTTTCTTCCTGCTGATTGGCATGAAGCATACAAGAAGAATCCTCTAGGTCCAAGTTTACATTTCACTGCAGAAGAAGCTATTC
AACACCAGCTAGATGCACTGAGATACAATGATCGACCCCATCCAGATTATGGAATTGAGGTCATGTACCAGTTTGCTGGGTTCGATCCTCTACGAAGGTCAACGTATTTC
GGTCCTTTCTTTGATTTGGGACAGTTTGAAAGATTTAGACGAGTGTTCCACCATTCGACATATCGTGTATTGCTTGGTCATAAAGAGAGAAAGATCTTGAGCAGTTTGTT
TGTAGAGGAGAACCGATTCAAGCAGCGGGTATGGATACGAGGTTGTCGCCCCAAGGAAGAAGAAATATTTCAATTCACCATGGTTCAGAGGGTTGGCGGCTCGTGGGATG
GGTATTGGCTTACAGAAAGTTTACTCAACGATGGAGATGCATTTAGTGGAGGCTTAGCTTACTAA

mRNA sequence

Show/hide mRNA sequence

CAAAAAACAAATCGACGCCTTCACCTCCAAAACGCCAATCACTCATCAACCATCGATTTCATCAGAGACGAAGGAGAAGAAGGAACGGAAGGGAAACAATCTTCTCCGGT
GGAAGAGGATGTCATGTTGTTCGTCCTTATCAGCGGCTCCTTCATCCATGTCTTTGATTTCCAAGCGCAAATTCACGAGTTCTGTCAATAAACCGGTGATCGTTTCCATG
AATTCTCGCTTCAGAGCTTCTGCAGAAGTTCCCGATTTTCTTCCTGCTGATTGGCATGAAGCATACAAGAAGAATCCTCTAGGTCCAAGTTTACATTTCACTGCAGAAGA
AGCTATTCAACACCAGCTAGATGCACTGAGATACAATGATCGACCCCATCCAGATTATGGAATTGAGGTCATGTACCAGTTTGCTGGGTTCGATCCTCTACGAAGGTCAA
CGTATTTCGGTCCTTTCTTTGATTTGGGACAGTTTGAAAGATTTAGACGAGTGTTCCACCATTCGACATATCGTGTATTGCTTGGTCATAAAGAGAGAAAGATCTTGAGC
AGTTTGTTTGTAGAGGAGAACCGATTCAAGCAGCGGGTATGGATACGAGGTTGTCGCCCCAAGGAAGAAGAAATATTTCAATTCACCATGGTTCAGAGGGTTGGCGGCTC
GTGGGATGGGTATTGGCTTACAGAAAGTTTACTCAACGATGGAGATGCATTTAGTGGAGGCTTAGCTTACTAATGAAAAGATGCTCTGCTCAAATTGGATGCCTGGTTAG
AAAACTTAGCATTATGTTGTTCAATTTGTATATTTGAAATCTGTGTTATATTTATTGTGAACCCTTGTAAGATTATAACGTAGCATTTGTATATATTATTTACATGGTTT
CTACC

Protein sequence

Show/hide protein sequence

MSCCSSLSAAPSSMSLISKRKFTSSVNKPVIVSMNSRFRASAEVPDFLPADWHEAYKKNPLGPSLHFTAEEAIQHQLDALRYNDRPHPDYGIEVMYQFAGFDPLRRSTYF
GPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSGGLAY

Tan0000430 (gene) of Snake gourd v1 genome