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Tan0000511 (gene) of Snake gourd v1 genome

Gene IDTan0000511
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionCCHC-type domain-containing protein
Genome locationLG08:21544110..21544649
RNA-Seq ExpressionTan0000511
SyntenyTan0000511
Gene Ontology termsNA
InterPro domainsIPR025836 - Zinc knuckle CX2CX4HX4C


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PON78322.1 Zinc knuckle CX2CX4HX4C [Parasponia andersonii]2.6e-0935.35Show/hide
Query:  LGNVMGFFEEFDEGDGDLSWGTSMRVKIRIDITKSLRRGIKLNIEGPMDGVLILIKYEKLPKFRSSSGIIGHHFKDCNQFY-KNSTQGAKYHQYGQYLQ
        LG+++   EE D G      GT MRV+++ D+TK LRR I + +E   + + +L++YEKLP F +  GI+GH+F++C +   ++  + ++  +YG++L+
Subjt:  LGNVMGFFEEFDEGDGDLSWGTSMRVKIRIDITKSLRRGIKLNIEGPMDGVLILIKYEKLPKFRSSSGIIGHHFKDCNQFY-KNSTQGAKYHQYGQYLQ

XP_022132681.1 uncharacterized protein LOC111005481 [Momordica charantia]4.9e-1644.66Show/hide
Query:  MPQRLGNVMGFFEEFDEGDGDLSWGTSMRVKIRIDITKSLRRGIKLNIEGPMDGVLILIKYEKLPKFRSSSGIIGHHFKDCNQFYKNSTQGAKYHQYGQY
        M  RLGN +G FE+ +    +  WG+ +RV++R D+ K L RGIKLN++GPM G  I I+YE+LP FR   G + H  KDC+    +S   +K  QYG +
Subjt:  MPQRLGNVMGFFEEFDEGDGDLSWGTSMRVKIRIDITKSLRRGIKLNIEGPMDGVLILIKYEKLPKFRSSSGIIGHHFKDCNQFYKNSTQGAKYHQYGQY

Query:  LQF
        L+F
Subjt:  LQF

XP_022156185.1 uncharacterized protein LOC111023135 [Momordica charantia]1.3e-1646.67Show/hide
Query:  MPQRLGNVMGFFEEFDEGDGDLSWGTSMRVKIRIDITKSLRRGIKLNIEGPMDGVLILIKYEKLPKFRSSSGIIGHHFKDCNQFYKNSTQGAK-YHQYGQ
        M  RLGN +G F + D  +   SWG S+R+++ IDITK LRRGIK+NI+GPM G  I I+YE+LP F    G+IGH   DC+  Y  +   ++   +YG 
Subjt:  MPQRLGNVMGFFEEFDEGDGDLSWGTSMRVKIRIDITKSLRRGIKLNIEGPMDGVLILIKYEKLPKFRSSSGIIGHHFKDCNQFYKNSTQGAK-YHQYGQ

Query:  YLQFV
        +L+FV
Subjt:  YLQFV

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]1.5e-1233.53Show/hide
Query:  MPQRLGNVMGFFEEFDEGDGDLSWGTSMRVKIRIDITKSLRRGIKLNIEGPMDGVLILIKYEKLPKFRSSSGIIGHHFKDCNQFYKNSTQGAKYHQYGQY
        M  RLGN +G FEE D  D +  WG+++RV++ +DI+K LRRGIKLN++GP+ G  I I+YE+LP F    G+               +   K HQYG +
Subjt:  MPQRLGNVMGFFEEFDEGDGDLSWGTSMRVKIRIDITKSLRRGIKLNIEGPMDGVLILIKYEKLPKFRSSSGIIGHHFKDCNQFYKNSTQGAKYHQYGQY

Query:  LQFVSRSSAIARSSAFISQKKGYPNDKFSMKDIETLMATSPTFSSRIGVKESPS--PISVDGVLPSPAPV
        L++      +  +   + Q +    DK       +  +TSP  +   GV+ +P+  PI++    P  +PV
Subjt:  LQFVSRSSAIARSSAFISQKKGYPNDKFSMKDIETLMATSPTFSSRIGVKESPS--PISVDGVLPSPAPV

XP_028117212.1 uncharacterized protein LOC114314884 [Camellia sinensis]2.4e-1038.38Show/hide
Query:  LGNVMGFFEEFDEGDGDLSWGTSMRVKIRIDITKSLRRGIKLNIEGPMDGVLILIKYEKLPKFRSSSGIIGHHFKDC-NQFYKNSTQGAKYHQYGQYLQ
        LGN +G F + + GDG ++WG ++ ++I I+I K LRRG+KL + G  + V I ++YE+LP F    G++GH   DC N+  + + +     QYG +L+
Subjt:  LGNVMGFFEEFDEGDGDLSWGTSMRVKIRIDITKSLRRGIKLNIEGPMDGVLILIKYEKLPKFRSSSGIIGHHFKDC-NQFYKNSTQGAKYHQYGQYLQ

TrEMBL top hitse value%identityAlignment
A0A2P5DYF4 Zinc knuckle CX2CX4HX4C1.3e-0935.35Show/hide
Query:  LGNVMGFFEEFDEGDGDLSWGTSMRVKIRIDITKSLRRGIKLNIEGPMDGVLILIKYEKLPKFRSSSGIIGHHFKDCNQFY-KNSTQGAKYHQYGQYLQ
        LG+++   EE D G      GT MRV+++ D+TK LRR I + +E   + + +L++YEKLP F +  GI+GH+F++C +   ++  + ++  +YG++L+
Subjt:  LGNVMGFFEEFDEGDGDLSWGTSMRVKIRIDITKSLRRGIKLNIEGPMDGVLILIKYEKLPKFRSSSGIIGHHFKDCNQFY-KNSTQGAKYHQYGQYLQ

A0A6J1BSZ1 uncharacterized protein LOC1110054812.4e-1644.66Show/hide
Query:  MPQRLGNVMGFFEEFDEGDGDLSWGTSMRVKIRIDITKSLRRGIKLNIEGPMDGVLILIKYEKLPKFRSSSGIIGHHFKDCNQFYKNSTQGAKYHQYGQY
        M  RLGN +G FE+ +    +  WG+ +RV++R D+ K L RGIKLN++GPM G  I I+YE+LP FR   G + H  KDC+    +S   +K  QYG +
Subjt:  MPQRLGNVMGFFEEFDEGDGDLSWGTSMRVKIRIDITKSLRRGIKLNIEGPMDGVLILIKYEKLPKFRSSSGIIGHHFKDCNQFYKNSTQGAKYHQYGQY

Query:  LQF
        L+F
Subjt:  LQF

A0A6J1DU55 uncharacterized protein LOC1110231356.3e-1746.67Show/hide
Query:  MPQRLGNVMGFFEEFDEGDGDLSWGTSMRVKIRIDITKSLRRGIKLNIEGPMDGVLILIKYEKLPKFRSSSGIIGHHFKDCNQFYKNSTQGAK-YHQYGQ
        M  RLGN +G F + D  +   SWG S+R+++ IDITK LRRGIK+NI+GPM G  I I+YE+LP F    G+IGH   DC+  Y  +   ++   +YG 
Subjt:  MPQRLGNVMGFFEEFDEGDGDLSWGTSMRVKIRIDITKSLRRGIKLNIEGPMDGVLILIKYEKLPKFRSSSGIIGHHFKDCNQFYKNSTQGAK-YHQYGQ

Query:  YLQFV
        +L+FV
Subjt:  YLQFV

A0A6J1DX30 uncharacterized protein LOC1110248747.2e-1333.53Show/hide
Query:  MPQRLGNVMGFFEEFDEGDGDLSWGTSMRVKIRIDITKSLRRGIKLNIEGPMDGVLILIKYEKLPKFRSSSGIIGHHFKDCNQFYKNSTQGAKYHQYGQY
        M  RLGN +G FEE D  D +  WG+++RV++ +DI+K LRRGIKLN++GP+ G  I I+YE+LP F    G+               +   K HQYG +
Subjt:  MPQRLGNVMGFFEEFDEGDGDLSWGTSMRVKIRIDITKSLRRGIKLNIEGPMDGVLILIKYEKLPKFRSSSGIIGHHFKDCNQFYKNSTQGAKYHQYGQY

Query:  LQFVSRSSAIARSSAFISQKKGYPNDKFSMKDIETLMATSPTFSSRIGVKESPS--PISVDGVLPSPAPV
        L++      +  +   + Q +    DK       +  +TSP  +   GV+ +P+  PI++    P  +PV
Subjt:  LQFVSRSSAIARSSAFISQKKGYPNDKFSMKDIETLMATSPTFSSRIGVKESPS--PISVDGVLPSPAPV

A0A803LK12 Uncharacterized protein1.3e-0941.41Show/hide
Query:  QRLGNVMGFFEEFDEGDGDLSWGTSMRVKIRIDITKSLRRGIKLNIEGPMDGVLILIKYEKLPKFRSSSGIIGHHFKDCNQFYKNSTQGAKYHQYGQYL
        + +G+ MG F E+DE D  L W   MR+K+ +DITK LRRGIK+   GP     +  KYE+L  FR   G +GH  KDC +  K   + +   QYG ++
Subjt:  QRLGNVMGFFEEFDEGDGDLSWGTSMRVKIRIDITKSLRRGIKLNIEGPMDGVLILIKYEKLPKFRSSSGIIGHHFKDCNQFYKNSTQGAKYHQYGQYL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCACAGAGATTAGGCAATGTTATGGGGTTCTTTGAGGAGTTTGACGAGGGAGACGGGGACCTGAGTTGGGGCACGAGCATGAGGGTGAAGATTCGGATAGACATAAC
AAAATCGTTGAGAAGAGGGATCAAGCTGAACATAGAGGGTCCAATGGATGGGGTTTTGATCTTAATTAAGTATGAAAAACTACCTAAATTTCGCTCCAGTAGTGGTATAA
TTGGGCACCATTTTAAGGATTGTAATCAGTTTTACAAAAATTCAACCCAAGGAGCAAAGTACCATCAATATGGACAGTACCTGCAGTTTGTGAGCCGATCTTCGGCGATT
GCCCGATCTTCTGCATTTATCTCACAGAAGAAGGGTTATCCCAATGACAAATTTTCAATGAAGGACATAGAGACACTGATGGCAACATCTCCGACCTTTTCCTCGAGAAT
AGGGGTGAAGGAGTCGCCATCTCCGATCAGTGTGGATGGAGTCCTTCCGTCACCAGCGCCGGTTAGGAATGATGCATTAATGGATCATTCTCCATTATGA
mRNA sequenceShow/hide mRNA sequence
ATGCCACAGAGATTAGGCAATGTTATGGGGTTCTTTGAGGAGTTTGACGAGGGAGACGGGGACCTGAGTTGGGGCACGAGCATGAGGGTGAAGATTCGGATAGACATAAC
AAAATCGTTGAGAAGAGGGATCAAGCTGAACATAGAGGGTCCAATGGATGGGGTTTTGATCTTAATTAAGTATGAAAAACTACCTAAATTTCGCTCCAGTAGTGGTATAA
TTGGGCACCATTTTAAGGATTGTAATCAGTTTTACAAAAATTCAACCCAAGGAGCAAAGTACCATCAATATGGACAGTACCTGCAGTTTGTGAGCCGATCTTCGGCGATT
GCCCGATCTTCTGCATTTATCTCACAGAAGAAGGGTTATCCCAATGACAAATTTTCAATGAAGGACATAGAGACACTGATGGCAACATCTCCGACCTTTTCCTCGAGAAT
AGGGGTGAAGGAGTCGCCATCTCCGATCAGTGTGGATGGAGTCCTTCCGTCACCAGCGCCGGTTAGGAATGATGCATTAATGGATCATTCTCCATTATGA
Protein sequenceShow/hide protein sequence
MPQRLGNVMGFFEEFDEGDGDLSWGTSMRVKIRIDITKSLRRGIKLNIEGPMDGVLILIKYEKLPKFRSSSGIIGHHFKDCNQFYKNSTQGAKYHQYGQYLQFVSRSSAI
ARSSAFISQKKGYPNDKFSMKDIETLMATSPTFSSRIGVKESPSPISVDGVLPSPAPVRNDALMDHSPL