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Tan0000520 (gene) of Snake gourd v1 genome

Gene IDTan0000520
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionPMD domain-containing protein
Genome locationLG08:62426455..62428748
RNA-Seq ExpressionTan0000520
SyntenyTan0000520
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050733.1 uncharacterized protein E6C27_scaffold560G00370 [Cucumis melo var. makuwa]1.8e-1452.44Show/hide
Query:  MVYFTKHPDRKKNCLVILKDKDQPLDSGVILPVGAPIYGNFRESQPPLDNSIFLSSLSKERPLSPDSTLKAWFLESSIHNMI
        MVYFT++ D  K CL+ILKD +Q LDSG++LPV    + N  +SQ   +N I L   SKE+ ++P+S L +WFLESSIHN I
Subjt:  MVYFTKHPDRKKNCLVILKDKDQPLDSGVILPVGAPIYGNFRESQPPLDNSIFLSSLSKERPLSPDSTLKAWFLESSIHNMI

KAA0050733.1 uncharacterized protein E6C27_scaffold560G00370 [Cucumis melo var. makuwa]2.2e-0436.67Show/hide
Query:  GVILPVGAPIYGNFRESQPPLDNSIFLSSLSKERPLSPDSTLKAWFLESSIHNMIGIPTTVRRPMMVEFSGEGGAKYFNDFEARVHIHKG
        G    +  P+  N       + +S   SSL       P   +  W L    +      T++R P MVEFSGEGGAKY+ + EAR+HIHKG
Subjt:  GVILPVGAPIYGNFRESQPPLDNSIFLSSLSKERPLSPDSTLKAWFLESSIHNMIGIPTTVRRPMMVEFSGEGGAKYFNDFEARVHIHKG

KAA0050733.1 uncharacterized protein E6C27_scaffold560G00370 [Cucumis melo var. makuwa]4.4e-1350Show/hide
Query:  MVYFTKHPDRKKNCLVILKDKDQPLDSGVILPVGAPIYGNFRESQPPLDNSIFLSSLSKERPLSPDSTLKAWFLESSIHNMI
        MVYFT++ D  K CL+ILKD++Q LDS ++LPV    + N  +SQ   +N I L   SKE+ ++ +S L +WFLESSIHN I
Subjt:  MVYFTKHPDRKKNCLVILKDKDQPLDSGVILPVGAPIYGNFRESQPPLDNSIFLSSLSKERPLSPDSTLKAWFLESSIHNMI

TYK21863.1 uncharacterized protein E5676_scaffold836G00160 [Cucumis melo var. makuwa]8.0e-1552.44Show/hide
Query:  MVYFTKHPDRKKNCLVILKDKDQPLDSGVILPVGAPIYGNFRESQPPLDNSIFLSSLSKERPLSPDSTLKAWFLESSIHNMI
        MVYFT++ D  K CL+ILKD++Q LDSG++LPV    + N  +SQ   +N I L   SKE+ ++P+S L +WFLESSIHN I
Subjt:  MVYFTKHPDRKKNCLVILKDKDQPLDSGVILPVGAPIYGNFRESQPPLDNSIFLSSLSKERPLSPDSTLKAWFLESSIHNMI

XP_031745312.1 uncharacterized protein LOC116405439 [Cucumis sativus]6.6e-1758.75Show/hide
Query:  MVYFTKHPDRKKNCLVILKDKDQPLDSGVILPVGAPIYGNFRESQPPLDNSIFLSSLSKERPLSPDSTLKAWFLESSIHN
        MV+FT++ D  K CL+ILKD DQ L+ G+ILPV    Y N  +SQ P DN IFL   SKER ++P+S+LK+WFLESSIHN
Subjt:  MVYFTKHPDRKKNCLVILKDKDQPLDSGVILPVGAPIYGNFRESQPPLDNSIFLSSLSKERPLSPDSTLKAWFLESSIHN

XP_031745312.1 uncharacterized protein LOC116405439 [Cucumis sativus]4.4e-0540.91Show/hide
Query:  LPVGAPIYGNFRESQPPLDNSIFLSSLSKERPLSPDSTLKAWFLESSIHNMIGIPTTVRRPMMVEFSGEGGAKYFNDFEARVHIHKGK
        +PV A IY   R+           SSL       P   +  W L    +     P ++R P MVEFSGEGGAKY+ + EAR HIHKGK
Subjt:  LPVGAPIYGNFRESQPPLDNSIFLSSLSKERPLSPDSTLKAWFLESSIHNMIGIPTTVRRPMMVEFSGEGGAKYFNDFEARVHIHKGK

XP_031745312.1 uncharacterized protein LOC116405439 [Cucumis sativus]8.0e-1552.44Show/hide
Query:  MVYFTKHPDRKKNCLVILKDKDQPLDSGVILPVGAPIYGNFRESQPPLDNSIFLSSLSKERPLSPDSTLKAWFLESSIHNMI
        MVYFT++ D  K CL+ILKD++Q LDSG++LPV    + N  +SQ   +N I L   SKE+ ++P+S L +WFLESSIHN I
Subjt:  MVYFTKHPDRKKNCLVILKDKDQPLDSGVILPVGAPIYGNFRESQPPLDNSIFLSSLSKERPLSPDSTLKAWFLESSIHNMI

TrEMBL top hitse value%identityAlignment
A0A5A7SRI5 Uncharacterized protein3.9e-1552.44Show/hide
Query:  MVYFTKHPDRKKNCLVILKDKDQPLDSGVILPVGAPIYGNFRESQPPLDNSIFLSSLSKERPLSPDSTLKAWFLESSIHNMI
        MVYFT++ D  K CL+ILKD++Q LDSG++LPV    + N  +SQ   +N I L   SKE+ ++P+S L +WFLESSIHN I
Subjt:  MVYFTKHPDRKKNCLVILKDKDQPLDSGVILPVGAPIYGNFRESQPPLDNSIFLSSLSKERPLSPDSTLKAWFLESSIHNMI

A0A5A7SST7 PMD domain-containing protein2.1e-1350Show/hide
Query:  MVYFTKHPDRKKNCLVILKDKDQPLDSGVILPVGAPIYGNFRESQPPLDNSIFLSSLSKERPLSPDSTLKAWFLESSIHNMI
        MVYFT++ D  K CL+ILKD++Q LDS ++LPV    + N  +SQ   +N I L   SKE+ ++ +S L +WFLESSIHN I
Subjt:  MVYFTKHPDRKKNCLVILKDKDQPLDSGVILPVGAPIYGNFRESQPPLDNSIFLSSLSKERPLSPDSTLKAWFLESSIHNMI

A0A5A7U4C3 Uncharacterized protein8.7e-1552.44Show/hide
Query:  MVYFTKHPDRKKNCLVILKDKDQPLDSGVILPVGAPIYGNFRESQPPLDNSIFLSSLSKERPLSPDSTLKAWFLESSIHNMI
        MVYFT++ D  K CL+ILKD +Q LDSG++LPV    + N  +SQ   +N I L   SKE+ ++P+S L +WFLESSIHN I
Subjt:  MVYFTKHPDRKKNCLVILKDKDQPLDSGVILPVGAPIYGNFRESQPPLDNSIFLSSLSKERPLSPDSTLKAWFLESSIHNMI

A0A5A7U4C3 Uncharacterized protein1.1e-0436.67Show/hide
Query:  GVILPVGAPIYGNFRESQPPLDNSIFLSSLSKERPLSPDSTLKAWFLESSIHNMIGIPTTVRRPMMVEFSGEGGAKYFNDFEARVHIHKG
        G    +  P+  N       + +S   SSL       P   +  W L    +      T++R P MVEFSGEGGAKY+ + EAR+HIHKG
Subjt:  GVILPVGAPIYGNFRESQPPLDNSIFLSSLSKERPLSPDSTLKAWFLESSIHNMIGIPTTVRRPMMVEFSGEGGAKYFNDFEARVHIHKG

A0A5A7U4C3 Uncharacterized protein2.1e-1350Show/hide
Query:  MVYFTKHPDRKKNCLVILKDKDQPLDSGVILPVGAPIYGNFRESQPPLDNSIFLSSLSKERPLSPDSTLKAWFLESSIHNMI
        MVYFT++ D  K CL+ILKD++Q LDS ++LPV    + N  +SQ   +N I L   SKE+ ++ +S L +WFLESSIHN I
Subjt:  MVYFTKHPDRKKNCLVILKDKDQPLDSGVILPVGAPIYGNFRESQPPLDNSIFLSSLSKERPLSPDSTLKAWFLESSIHNMI

A0A5D3DEA3 Uncharacterized protein3.9e-1552.44Show/hide
Query:  MVYFTKHPDRKKNCLVILKDKDQPLDSGVILPVGAPIYGNFRESQPPLDNSIFLSSLSKERPLSPDSTLKAWFLESSIHNMI
        MVYFT++ D  K CL+ILKD++Q LDSG++LPV    + N  +SQ   +N I L   SKE+ ++P+S L +WFLESSIHN I
Subjt:  MVYFTKHPDRKKNCLVILKDKDQPLDSGVILPVGAPIYGNFRESQPPLDNSIFLSSLSKERPLSPDSTLKAWFLESSIHNMI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGTATTTTACGAAACACCCTGATCGAAAGAAAAATTGCTTGGTCATTTTAAAAGATAAAGATCAGCCTCTCGATAGTGGAGTCATTCTTCCGGTAGGAGCGCCGAT
ATATGGGAATTTCAGGGAGTCACAACCACCCTTAGACAACTCTATCTTTCTATCCAGTTTGTCTAAAGAGCGACCCTTGAGTCCTGATTCCACATTGAAGGCATGGTTTT
TAGAGTCATCGATACATAATATGATAGGAATCCCTACAACTGTTAGGAGGCCAATGATGGTGGAGTTTTCTGGCGAAGGTGGAGCCAAGTACTTCAATGATTTTGAAGCT
CGTGTACATATTCACAAAGGTAAGGTCTCAACCCGCTCCATCAACTCTTTGATGGGCATTGCATCAAGGCGGCTAGCAACCGCATCTATCACGTCGGCCTTGGTTGCAAT
CTCTTCCAGACGAGATTCCAAGAACTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTGTATTTTACGAAACACCCTGATCGAAAGAAAAATTGCTTGGTCATTTTAAAAGATAAAGATCAGCCTCTCGATAGTGGAGTCATTCTTCCGGTAGGAGCGCCGAT
ATATGGGAATTTCAGGGAGTCACAACCACCCTTAGACAACTCTATCTTTCTATCCAGTTTGTCTAAAGAGCGACCCTTGAGTCCTGATTCCACATTGAAGGCATGGTTTT
TAGAGTCATCGATACATAATATGATAGGAATCCCTACAACTGTTAGGAGGCCAATGATGGTGGAGTTTTCTGGCGAAGGTGGAGCCAAGTACTTCAATGATTTTGAAGCT
CGTGTACATATTCACAAAGGTAAGGTCTCAACCCGCTCCATCAACTCTTTGATGGGCATTGCATCAAGGCGGCTAGCAACCGCATCTATCACGTCGGCCTTGGTTGCAAT
CTCTTCCAGACGAGATTCCAAGAACTGA
Protein sequenceShow/hide protein sequence
MVYFTKHPDRKKNCLVILKDKDQPLDSGVILPVGAPIYGNFRESQPPLDNSIFLSSLSKERPLSPDSTLKAWFLESSIHNMIGIPTTVRRPMMVEFSGEGGAKYFNDFEA
RVHIHKGKVSTRSINSLMGIASRRLATASITSALVAISSRRDSKN