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Tan0000521 (gene) of Snake gourd v1 genome

Gene IDTan0000521
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionTransposon Ty3-I Gag-Pol polyprotein
Genome locationLG06:58524846..58526477
RNA-Seq ExpressionTan0000521
SyntenyTan0000521
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0008233 - peptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051909.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]8.1e-2063.95Show/hide
Query:  DVNQTIDPLHVPEGAITRSKAKKIQEAFILHLQKIVNAQGKTKIFEPKILYNVSTTSQDENGVKMAREKLSSLKDGTKDKKSVQKM
        DV+   + LHVPEG IT+ KAKKIQEAF LH+QK+ NAQ +TK FE K LYNVS+ SQ+E+GVKMAREKL + +DGT ++KSVQ +
Subjt:  DVNQTIDPLHVPEGAITRSKAKKIQEAFILHLQKIVNAQGKTKIFEPKILYNVSTTSQDENGVKMAREKLSSLKDGTKDKKSVQKM

KAA0067206.1 hypothetical protein E6C27_scaffold418G00080 [Cucumis melo var. makuwa]1.8e-1963.95Show/hide
Query:  DVNQTIDPLHVPEGAITRSKAKKIQEAFILHLQKIVNAQGKTKIFEPKILYNVSTTSQDENGVKMAREKLSSLKDGTKDKKSVQKM
        DV+   + LHVPEG IT+ KAKKIQEAF LH+QK+ NAQ + K FEPK LYNVS+ SQ+E+ +KMA EKL SL+DGT D+KSVQ +
Subjt:  DVNQTIDPLHVPEGAITRSKAKKIQEAFILHLQKIVNAQGKTKIFEPKILYNVSTTSQDENGVKMAREKLSSLKDGTKDKKSVQKM

TYK02449.1 F15O4.13 [Cucumis melo var. makuwa]9.5e-2165.12Show/hide
Query:  DVNQTIDPLHVPEGAITRSKAKKIQEAFILHLQKIVNAQGKTKIFEPKILYNVSTTSQDENGVKMAREKLSSLKDGTKDKKSVQKM
        DV+   + LHVPEG IT+ KAKKIQEAF LH+QK+ NAQ +TK FE K LYNVS+ SQ+E+GVKMAREKL +L+DGT+++KSVQ +
Subjt:  DVNQTIDPLHVPEGAITRSKAKKIQEAFILHLQKIVNAQGKTKIFEPKILYNVSTTSQDENGVKMAREKLSSLKDGTKDKKSVQKM

TYK20861.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]2.3e-1965.48Show/hide
Query:  DVNQTIDPLHVPEGAITRSKAKKIQEAFILHLQKIVNAQGKTKIFEPKILYNVSTTSQDENGVKMAREKLSSLKDGTKDKKSVQ
        DV+   + LHVPEG+IT+ KAKKIQEAF LH+QK+ NAQ +TK FE K LYNVS+ SQ+E+ VKMAREKL +L+DGT ++KSVQ
Subjt:  DVNQTIDPLHVPEGAITRSKAKKIQEAFILHLQKIVNAQGKTKIFEPKILYNVSTTSQDENGVKMAREKLSSLKDGTKDKKSVQ

TYK26105.1 F15O4.13 [Cucumis melo var. makuwa]2.3e-1963.95Show/hide
Query:  DVNQTIDPLHVPEGAITRSKAKKIQEAFILHLQKIVNAQGKTKIFEPKILYNVSTTSQDENGVKMAREKLSSLKDGTKDKKSVQKM
        DV+   + LHVPEG IT+ KAKKIQEAF LH+QK+ NAQ +TK FE K LYNVS+ SQ+E+ VKMAREKL +L+DGT ++KSVQ +
Subjt:  DVNQTIDPLHVPEGAITRSKAKKIQEAFILHLQKIVNAQGKTKIFEPKILYNVSTTSQDENGVKMAREKLSSLKDGTKDKKSVQKM

TrEMBL top hitse value%identityAlignment
A0A5A7UEI2 Transposon Ty3-I Gag-Pol polyprotein3.9e-2063.95Show/hide
Query:  DVNQTIDPLHVPEGAITRSKAKKIQEAFILHLQKIVNAQGKTKIFEPKILYNVSTTSQDENGVKMAREKLSSLKDGTKDKKSVQKM
        DV+   + LHVPEG IT+ KAKKIQEAF LH+QK+ NAQ +TK FE K LYNVS+ SQ+E+GVKMAREKL + +DGT ++KSVQ +
Subjt:  DVNQTIDPLHVPEGAITRSKAKKIQEAFILHLQKIVNAQGKTKIFEPKILYNVSTTSQDENGVKMAREKLSSLKDGTKDKKSVQKM

A0A5A7VDK8 Transposon Ty3-I Gag-Pol polyprotein1.1e-1965.48Show/hide
Query:  DVNQTIDPLHVPEGAITRSKAKKIQEAFILHLQKIVNAQGKTKIFEPKILYNVSTTSQDENGVKMAREKLSSLKDGTKDKKSVQ
        DV+   + LHVPEG+IT+ KAKKIQEAF LH+QK+ NAQ +TK FE K LYNVS+ SQ+E+ VKMAREKL +L+DGT ++KSVQ
Subjt:  DVNQTIDPLHVPEGAITRSKAKKIQEAFILHLQKIVNAQGKTKIFEPKILYNVSTTSQDENGVKMAREKLSSLKDGTKDKKSVQ

A0A5A7VL78 RT_RNaseH_2 domain-containing protein8.7e-2063.95Show/hide
Query:  DVNQTIDPLHVPEGAITRSKAKKIQEAFILHLQKIVNAQGKTKIFEPKILYNVSTTSQDENGVKMAREKLSSLKDGTKDKKSVQKM
        DV+   + LHVPEG IT+ KAKKIQEAF LH+QK+ NAQ + K FEPK LYNVS+ SQ+E+ +KMA EKL SL+DGT D+KSVQ +
Subjt:  DVNQTIDPLHVPEGAITRSKAKKIQEAFILHLQKIVNAQGKTKIFEPKILYNVSTTSQDENGVKMAREKLSSLKDGTKDKKSVQKM

A0A5D3BWE8 F15O4.134.6e-2165.12Show/hide
Query:  DVNQTIDPLHVPEGAITRSKAKKIQEAFILHLQKIVNAQGKTKIFEPKILYNVSTTSQDENGVKMAREKLSSLKDGTKDKKSVQKM
        DV+   + LHVPEG IT+ KAKKIQEAF LH+QK+ NAQ +TK FE K LYNVS+ SQ+E+GVKMAREKL +L+DGT+++KSVQ +
Subjt:  DVNQTIDPLHVPEGAITRSKAKKIQEAFILHLQKIVNAQGKTKIFEPKILYNVSTTSQDENGVKMAREKLSSLKDGTKDKKSVQKM

A0A5D3DB73 Transposon Ty3-I Gag-Pol polyprotein1.1e-1965.48Show/hide
Query:  DVNQTIDPLHVPEGAITRSKAKKIQEAFILHLQKIVNAQGKTKIFEPKILYNVSTTSQDENGVKMAREKLSSLKDGTKDKKSVQ
        DV+   + LHVPEG+IT+ KAKKIQEAF LH+QK+ NAQ +TK FE K LYNVS+ SQ+E+ VKMAREKL +L+DGT ++KSVQ
Subjt:  DVNQTIDPLHVPEGAITRSKAKKIQEAFILHLQKIVNAQGKTKIFEPKILYNVSTTSQDENGVKMAREKLSSLKDGTKDKKSVQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTAAATTCATAAAATTATGTGATGTGAATCAAACCATTGATCCATTGCATGTACCCGAAGGAGCAATAACAAGGAGCAAGGCCAAGAAGATTCAAGAGGCTTTCAT
ATTGCATCTCCAAAAGATCGTGAATGCACAAGGAAAGACCAAGATTTTTGAGCCCAAAATTCTTTATAATGTTAGTACAACAAGTCAAGATGAGAATGGAGTGAAGATGG
CACGGGAAAAGTTGTCTAGTTTGAAAGATGGCACAAAGGACAAAAAAAGTGTGCAGAAAATGTTTGATCTCGTTGGTCGACATCTTTTGGCCGACTCTCTAGAGGTGAAA
TATCTTCAATTTGCTTTACTTTATTTTCTTTCATTTTTTTTTCATTTACAAAAAAAAGTTCCGCAAGTGGTAGATCCAAATATGGCTATTCTTCAAGCAATTCAAGGTAT
GATGGAGATGATGAGAGAAGAAAGGGAAGAAAGGAGAGCACAACAACAAAGAGAAGAACGGATCTTGCAAGAAGATGAAGGCATGTTTGATTTACTGTGTACAAGAAAGA
AACTTAGGAGGAAGAGGAAATGTGAGGGGAAGAGGAAGAAATAA
mRNA sequenceShow/hide mRNA sequence
ATGGTTAAATTCATAAAATTATGTGATGTGAATCAAACCATTGATCCATTGCATGTACCCGAAGGAGCAATAACAAGGAGCAAGGCCAAGAAGATTCAAGAGGCTTTCAT
ATTGCATCTCCAAAAGATCGTGAATGCACAAGGAAAGACCAAGATTTTTGAGCCCAAAATTCTTTATAATGTTAGTACAACAAGTCAAGATGAGAATGGAGTGAAGATGG
CACGGGAAAAGTTGTCTAGTTTGAAAGATGGCACAAAGGACAAAAAAAGTGTGCAGAAAATGTTTGATCTCGTTGGTCGACATCTTTTGGCCGACTCTCTAGAGGTGAAA
TATCTTCAATTTGCTTTACTTTATTTTCTTTCATTTTTTTTTCATTTACAAAAAAAAGTTCCGCAAGTGGTAGATCCAAATATGGCTATTCTTCAAGCAATTCAAGGTAT
GATGGAGATGATGAGAGAAGAAAGGGAAGAAAGGAGAGCACAACAACAAAGAGAAGAACGGATCTTGCAAGAAGATGAAGGCATGTTTGATTTACTGTGTACAAGAAAGA
AACTTAGGAGGAAGAGGAAATGTGAGGGGAAGAGGAAGAAATAA
Protein sequenceShow/hide protein sequence
MVKFIKLCDVNQTIDPLHVPEGAITRSKAKKIQEAFILHLQKIVNAQGKTKIFEPKILYNVSTTSQDENGVKMAREKLSSLKDGTKDKKSVQKMFDLVGRHLLADSLEVK
YLQFALLYFLSFFFHLQKKVPQVVDPNMAILQAIQGMMEMMREEREERRAQQQREERILQEDEGMFDLLCTRKKLRRKRKCEGKRKK