CuGenDBv2

Gene ID	Tan0000524
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Protein-serine/threonine phosphatase
Genome location	LG05:85869260..85869844
RNA-Seq Expression	Tan0000524
Synteny	Tan0000524
Gene Ontology terms	GO:0006369 - termination of RNA polymerase II transcription (biological process) GO:0006378 - mRNA polyadenylation (biological process) GO:0070940 - dephosphorylation of RNA polymerase II C-terminal domain (biological process) GO:0005847 - mRNA cleavage and polyadenylation specificity factor complex (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0008420 - RNA polymerase II CTD heptapeptide repeat phosphatase activity (molecular function)
InterPro domains	IPR006811 - RNA polymerase II subunit A

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6607390.1 RNA polymerase II subunit A C-terminal domain phosphatase SSU72, partial [Cucurbita argyrosperma subsp. sororia]

3.5e-25

95.31

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Query:  MKTVLIVNLEVKDNHEEAAVGARLTFDLCQEIERTESWEDTIDDIVIAFEKQQRRKLLYSISFY
        MKTVLIVNLEVKDNHEEAA+GARLTFDLCQEIER ESWEDTIDDIVIAFEK QRRKLLYSISFY
Subjt:  MKTVLIVNLEVKDNHEEAAVGARLTFDLCQEIERTESWEDTIDDIVIAFEKQQRRKLLYSISFY

XP_008446784.1 PREDICTED: RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Cucumis melo]

1.3e-24

93.75

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Query:  MKTVLIVNLEVKDNHEEAAVGARLTFDLCQEIERTESWEDTIDDIVIAFEKQQRRKLLYSISFY
        MKTVLIVNLEVKDNHEEAA+GARLTFDLCQEIERTESWED+IDDIVI FEKQ RRKLLYSISFY
Subjt:  MKTVLIVNLEVKDNHEEAAVGARLTFDLCQEIERTESWEDTIDDIVIAFEKQQRRKLLYSISFY

XP_022137335.1 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Momordica charantia]

6.0e-25

95.31

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Query:  MKTVLIVNLEVKDNHEEAAVGARLTFDLCQEIERTESWEDTIDDIVIAFEKQQRRKLLYSISFY
        MKTVLIVNLEVKDNHEEAA+GARLTFDLCQEIERTESWE TIDDIVIAFEKQ RRKLLYSISFY
Subjt:  MKTVLIVNLEVKDNHEEAAVGARLTFDLCQEIERTESWEDTIDDIVIAFEKQQRRKLLYSISFY

XP_022948646.1 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Cucurbita moschata]

3.5e-25

95.31

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Query:  MKTVLIVNLEVKDNHEEAAVGARLTFDLCQEIERTESWEDTIDDIVIAFEKQQRRKLLYSISFY
        MKTVLIVNLEVKDNHEEAA+GARLTFDLCQEIER ESWEDTIDDIVIAFEK QRRKLLYSISFY
Subjt:  MKTVLIVNLEVKDNHEEAAVGARLTFDLCQEIERTESWEDTIDDIVIAFEKQQRRKLLYSISFY

XP_022997876.1 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Cucurbita maxima]

1.3e-24

93.75

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Query:  MKTVLIVNLEVKDNHEEAAVGARLTFDLCQEIERTESWEDTIDDIVIAFEKQQRRKLLYSISFY
        MKTVLIVNLEVKDNHEEAA+GARLTF+LCQEIER ESWEDTIDDIVIAFEK QRRKLLYSISFY
Subjt:  MKTVLIVNLEVKDNHEEAAVGARLTFDLCQEIERTESWEDTIDDIVIAFEKQQRRKLLYSISFY

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LPW0 Protein-serine/threonine phosphatase

1.1e-24

93.75

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Query:  MKTVLIVNLEVKDNHEEAAVGARLTFDLCQEIERTESWEDTIDDIVIAFEKQQRRKLLYSISFY
        MKTVLIVNLEVKDNHEEAA+GARLTFDLCQEIERTESWED+IDDIVI FEKQ RRKLLYSISFY
Subjt:  MKTVLIVNLEVKDNHEEAAVGARLTFDLCQEIERTESWEDTIDDIVIAFEKQQRRKLLYSISFY

A0A1S3BFX9 Protein-serine/threonine phosphatase

6.5e-25

93.75

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Query:  MKTVLIVNLEVKDNHEEAAVGARLTFDLCQEIERTESWEDTIDDIVIAFEKQQRRKLLYSISFY
        MKTVLIVNLEVKDNHEEAA+GARLTFDLCQEIERTESWED+IDDIVI FEKQ RRKLLYSISFY
Subjt:  MKTVLIVNLEVKDNHEEAAVGARLTFDLCQEIERTESWEDTIDDIVIAFEKQQRRKLLYSISFY

A0A6J1C6C8 Protein-serine/threonine phosphatase

2.9e-25

95.31

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Query:  MKTVLIVNLEVKDNHEEAAVGARLTFDLCQEIERTESWEDTIDDIVIAFEKQQRRKLLYSISFY
        MKTVLIVNLEVKDNHEEAA+GARLTFDLCQEIERTESWE TIDDIVIAFEKQ RRKLLYSISFY
Subjt:  MKTVLIVNLEVKDNHEEAAVGARLTFDLCQEIERTESWEDTIDDIVIAFEKQQRRKLLYSISFY

A0A6J1G9U0 Protein-serine/threonine phosphatase

1.7e-25

95.31

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Query:  MKTVLIVNLEVKDNHEEAAVGARLTFDLCQEIERTESWEDTIDDIVIAFEKQQRRKLLYSISFY
        MKTVLIVNLEVKDNHEEAA+GARLTFDLCQEIER ESWEDTIDDIVIAFEK QRRKLLYSISFY
Subjt:  MKTVLIVNLEVKDNHEEAAVGARLTFDLCQEIERTESWEDTIDDIVIAFEKQQRRKLLYSISFY

A0A6J1K8Q5 Protein-serine/threonine phosphatase

6.5e-25

93.75

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Query:  MKTVLIVNLEVKDNHEEAAVGARLTFDLCQEIERTESWEDTIDDIVIAFEKQQRRKLLYSISFY
        MKTVLIVNLEVKDNHEEAA+GARLTF+LCQEIER ESWEDTIDDIVIAFEK QRRKLLYSISFY
Subjt:  MKTVLIVNLEVKDNHEEAAVGARLTFDLCQEIERTESWEDTIDDIVIAFEKQQRRKLLYSISFY

SwissProt top hits

e value

%identity

Alignment

Q17QI2 RNA polymerase II subunit A C-terminal domain phosphatase SSU72

8.2e-09

42.62

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Query:  VLIVNLEVKDNHEEAAVGARLTFDLCQEIERTESWEDTIDDIVIAFEKQQRRKLLYSISFY
        V ++N++++DNHEEA +GA L  +LCQ I+ TE  E+ ID+++  FE++  R  L+++ FY
Subjt:  VLIVNLEVKDNHEEAAVGARLTFDLCQEIERTESWEDTIDDIVIAFEKQQRRKLLYSISFY

Q4KLK9 RNA polymerase II subunit A C-terminal domain phosphatase SSU72

6.3e-09

44.26

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Query:  VLIVNLEVKDNHEEAAVGARLTFDLCQEIERTESWEDTIDDIVIAFEKQQRRKLLYSISFY
        V +VN++++DNHEEA +GA L  +LCQ I+ TE  E+ ID+++  FE++  R  L+++ FY
Subjt:  VLIVNLEVKDNHEEAAVGARLTFDLCQEIERTESWEDTIDDIVIAFEKQQRRKLLYSISFY

Q5ZJQ7 RNA polymerase II subunit A C-terminal domain phosphatase SSU72

8.2e-09

42.62

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Query:  VLIVNLEVKDNHEEAAVGARLTFDLCQEIERTESWEDTIDDIVIAFEKQQRRKLLYSISFY
        V ++N++++DNHEEA +GA L  +LCQ I+ TE  E+ ID+++  FE++  R  L+++ FY
Subjt:  VLIVNLEVKDNHEEAAVGARLTFDLCQEIERTESWEDTIDDIVIAFEKQQRRKLLYSISFY

Q9CY97 RNA polymerase II subunit A C-terminal domain phosphatase SSU72

6.3e-09

44.26

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Query:  VLIVNLEVKDNHEEAAVGARLTFDLCQEIERTESWEDTIDDIVIAFEKQQRRKLLYSISFY
        V +VN++++DNHEEA +GA L  +LCQ I+ TE  E+ ID+++  FE++  R  L+++ FY
Subjt:  VLIVNLEVKDNHEEAAVGARLTFDLCQEIERTESWEDTIDDIVIAFEKQQRRKLLYSISFY

Q9NP77 RNA polymerase II subunit A C-terminal domain phosphatase SSU72

6.3e-09

44.26

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Query:  VLIVNLEVKDNHEEAAVGARLTFDLCQEIERTESWEDTIDDIVIAFEKQQRRKLLYSISFY
        V +VN++++DNHEEA +GA L  +LCQ I+ TE  E+ ID+++  FE++  R  L+++ FY
Subjt:  VLIVNLEVKDNHEEAAVGARLTFDLCQEIERTESWEDTIDDIVIAFEKQQRRKLLYSISFY

Arabidopsis top hits

e value

%identity

Alignment

AT1G73820.1 Ssu72-like family protein

2.7e-23

76.19

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Query:  KTVLIVNLEVKDNHEEAAVGARLTFDLCQEIERTESWEDTIDDIVIAFEKQQRRKLLYSISFY
        KT+L++NLEVKDNHEEAA+G RL  +LCQEIE  E+WEDTIDDIV  FEKQ RRKL+YSISFY
Subjt:  KTVLIVNLEVKDNHEEAAVGARLTFDLCQEIERTESWEDTIDDIVIAFEKQQRRKLLYSISFY

Sequences

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CDS sequence

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ATGAAAACTGTACTGATTGTAAATTTGGAGGTAAAAGATAACCACGAGGAGGCAGCTGTAGGAGCACGGCTTACTTTTGATCTTTGCCAGGAGATTGAACGGACTGAATC
ATGGGAAGATACGATAGATGACATCGTGATTGCCTTCGAGAAACAGCAAAGAAGAAAACTGTTGTATAGCATTTCCTTTTACTGA

mRNA sequence

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CTGAAATTCTCTTTCTGCTAAACCGTCTGATGATAATTGTGTGATAATTGAGCAGATCTCAACACCCGTGATCATGCACTGATGAAAACTGTACTGATTGTAAATTTGGA
GGTAAAAGATAACCACGAGGAGGCAGCTGTAGGAGCACGGCTTACTTTTGATCTTTGCCAGGAGATTGAACGGACTGAATCATGGGAAGATACGATAGATGACATCGTGA
TTGCCTTCGAGAAACAGCAAAGAAGAAAACTGTTGTATAGCATTTCCTTTTACTGAAGACGGCATGATTACTGTAGTACGGAATATGAGCTGCTTCAACTTTAAGCATAT
TGGTTATTTTATTCGGTTGTTTTTGTAATACTTCTTTTCCAGAAACGAGAAACTTAGTAAAAAAAAAAACGAGAACTAAAGTCAGAAAATAGCATGTTGGCGACGTTTTC
GTATGGATAACCTATTTCTACGTGCTTTAATGACTGATGACCTAGATTCTGAAAATAATAAAATATGAC

Protein sequence

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MKTVLIVNLEVKDNHEEAAVGARLTFDLCQEIERTESWEDTIDDIVIAFEKQQRRKLLYSISFY

Tan0000524 (gene) of Snake gourd v1 genome