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Tan0000556 (gene) of Snake gourd v1 genome

Gene IDTan0000556
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionSANT domain-containing protein
Genome locationLG02:88277970..88279611
RNA-Seq ExpressionTan0000556
SyntenyTan0000556
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR017884 - SANT domain
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008444713.1 PREDICTED: protein RADIALIS-like 4 [Cucumis melo]7.1e-3889.47Show/hide
Query:  SSSSSSSSSVWSSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNYSKHFS-SNFLDEQQRLKSLKLQ
        +SSSSSSSS WSSKQNK+FENALTVYDKDSPDRWQKLARAVGGKTA+EVKRHYEMLVEDVHNIETG+VPLPNYSKH+S +NFLDE+QRLK LKLQ
Subjt:  SSSSSSSSSVWSSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNYSKHFS-SNFLDEQQRLKSLKLQ

XP_022997502.1 protein RADIALIS-like 4 [Cucurbita maxima]1.5e-3587.76Show/hide
Query:  SSSSSSSSSVWSSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNY---SKHFSSN-FLDEQQRLKSLKLQ
        SSSSSSSSS WSSKQNK+FENALTVYDKDSPDRWQKLA +VGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNY   SKH SSN FLDE+QRLK LKL+
Subjt:  SSSSSSSSSVWSSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNY---SKHFSSN-FLDEQQRLKSLKLQ

XP_023002559.1 protein RADIALIS-like 4 [Cucurbita maxima]1.9e-3586.46Show/hide
Query:  SSSSSSSSSVWSSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNY---SKHFSSNFLDEQQRLKSLKL
        SSSSSSSS+VWSSKQNK+FENALTVYDKDSPDRWQKLA AVGGKTAEEVKRHYEMLVEDVHNIE GR+PLPNY   SK + SNFLDE+QRLK LKL
Subjt:  SSSSSSSSSVWSSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNY---SKHFSSNFLDEQQRLKSLKL

XP_031737271.1 protein RADIALIS-like 4 [Cucumis sativus]2.1e-3787.5Show/hide
Query:  SSSSSSSSSVWSSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNYSKHFS--SNFLDEQQRLKSLKLQ
        +SSSSSSSS WSSKQNK+FENALTVYDKDSPDRWQKLARAVGGKTA+EVKRHYEMLVEDVHNIETG+VPLPNYSKH+S  +NF+DE+QRLK LKLQ
Subjt:  SSSSSSSSSVWSSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNYSKHFS--SNFLDEQQRLKSLKLQ

XP_038886301.1 protein RADIALIS-like 3 [Benincasa hispida]1.0e-3687.37Show/hide
Query:  SSSSSSSSSVWSSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNYSKHFS-SNFLDEQQRLKSLKLQ
        +SSSSSSSS WSSKQNK+FENALTVYDKDSPDRWQKLA A+GGKTAEEVK HY+MLVEDVHNIETGRVPLPNYSKH+S +NFLDE+QRLK LKLQ
Subjt:  SSSSSSSSSVWSSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNYSKHFS-SNFLDEQQRLKSLKLQ

TrEMBL top hitse value%identityAlignment
A0A0A0LNL9 SANT domain-containing protein1.0e-3487.64Show/hide
Query:  SSSSSSSSSVWSSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNYSKHFS--SNFLDEQQR
        +SSSSSSSS WSSKQNK+FENALTVYDKDSPDRWQKLARAVGGKTA+EVKRHYEMLVEDVHNIETG+VPLPNYSKH+S  +NF+DE+QR
Subjt:  SSSSSSSSSVWSSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNYSKHFS--SNFLDEQQR

A0A1S3BBR2 protein RADIALIS-like 43.4e-3889.47Show/hide
Query:  SSSSSSSSSVWSSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNYSKHFS-SNFLDEQQRLKSLKLQ
        +SSSSSSSS WSSKQNK+FENALTVYDKDSPDRWQKLARAVGGKTA+EVKRHYEMLVEDVHNIETG+VPLPNYSKH+S +NFLDE+QRLK LKLQ
Subjt:  SSSSSSSSSVWSSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNYSKHFS-SNFLDEQQRLKSLKLQ

A0A6J1CRB5 protein RADIALIS-like 3 isoform X17.9e-3585.87Show/hide
Query:  SSSSSSSVWSSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNYSKHFSSNFLDEQQRLKSLKLQ
        SSSSSSS+WSSKQNKLFENALTVYDK+SP+RWQ LARAVGGKTAEEVK HY+MLVEDVHNIE+GRVPLPNY+    SNFL+EQQRLKSLKLQ
Subjt:  SSSSSSSVWSSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNYSKHFSSNFLDEQQRLKSLKLQ

A0A6J1K580 protein RADIALIS-like 47.1e-3687.76Show/hide
Query:  SSSSSSSSSVWSSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNY---SKHFSSN-FLDEQQRLKSLKLQ
        SSSSSSSSS WSSKQNK+FENALTVYDKDSPDRWQKLA +VGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNY   SKH SSN FLDE+QRLK LKL+
Subjt:  SSSSSSSSSVWSSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNY---SKHFSSN-FLDEQQRLKSLKLQ

A0A6J1KQS6 protein RADIALIS-like 49.3e-3686.46Show/hide
Query:  SSSSSSSSSVWSSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNY---SKHFSSNFLDEQQRLKSLKL
        SSSSSSSS+VWSSKQNK+FENALTVYDKDSPDRWQKLA AVGGKTAEEVKRHYEMLVEDVHNIE GR+PLPNY   SK + SNFLDE+QRLK LKL
Subjt:  SSSSSSSSSVWSSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNY---SKHFSSNFLDEQQRLKSLKL

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 13.3e-2252.58Show/hide
Query:  SSSSSSSSSVWSSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNYSKH---FSSNFLDEQQRLKSLKLQ
        SS SS SS  W++KQNK FE AL  YD+D+P+RWQ +A+ VGGKT EEVKRHYE+LV+D+++IE G VP PNY       +     E++R+++++LQ
Subjt:  SSSSSSSSSVWSSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNYSKH---FSSNFLDEQQRLKSLKLQ

Q1A173 Protein RADIALIS-like 61.6e-2461.22Show/hide
Query:  MSSSSSSSSSVWSSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNYSKHFSSNFLD----EQQRLKSLKL
        M+S+S SS S W+  QNK+FE AL VYDKD+PDRW  +A+AVGGKT EEVKRHY++LVED+ NIETGRVPLPNY K F SN       + +++K+LK+
Subjt:  MSSSSSSSSSVWSSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNYSKHFSSNFLD----EQQRLKSLKL

Q6NNN0 Protein RADIALIS-like 31.3e-2164.86Show/hide
Query:  MSSSSSSSSSVWSSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNY
        M+S+S SSS+ W+ K+NKLFE AL  YD+D+PDRW  +ARAVGGK+AEEV+RHYE+L+ DV++IE+GR P PNY
Subjt:  MSSSSSSSSSVWSSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNY

Q8GW75 Protein RADIALIS-like 58.7e-2371.62Show/hide
Query:  MSSSSSSSSSVWSSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNY
        M+SSS SSSS W+SKQNK+FE AL VYDKD+PDRWQ +A+AVG K+AEEVKRHY++LVED+ NIE   VPLP Y
Subjt:  MSSSSSSSSSVWSSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNY

Q9SIJ5 Protein RADIALIS-like 28.1e-2152.58Show/hide
Query:  SSSSSSSSVWSSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNYSKHFSSN----FLDEQQRLKSLKLQ
        S SS  S  W+ KQNK FE AL VYD+D+PDRW  +ARAVGGKT EE KR Y++LV D+ +IE G VP P+Y     ++      DE++R++S+KLQ
Subjt:  SSSSSSSSVWSSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNYSKHFSSN----FLDEQQRLKSLKLQ

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 56.2e-2471.62Show/hide
Query:  MSSSSSSSSSVWSSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNY
        M+SSS SSSS W+SKQNK+FE AL VYDKD+PDRWQ +A+AVG K+AEEVKRHY++LVED+ NIE   VPLP Y
Subjt:  MSSSSSSSSSVWSSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNY

AT1G75250.1 RAD-like 61.9e-2570.37Show/hide
Query:  MSSSSSSSSSVWSSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNYSKHFSSN
        M+S+S SS S W+  QNK+FE AL VYDKD+PDRW  +A+AVGGKT EEVKRHY++LVED+ NIETGRVPLPNY K F SN
Subjt:  MSSSSSSSSSVWSSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNYSKHFSSN

AT1G75250.2 RAD-like 61.1e-2561.22Show/hide
Query:  MSSSSSSSSSVWSSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNYSKHFSSNFLD----EQQRLKSLKL
        M+S+S SS S W+  QNK+FE AL VYDKD+PDRW  +A+AVGGKT EEVKRHY++LVED+ NIETGRVPLPNY K F SN       + +++K+LK+
Subjt:  MSSSSSSSSSVWSSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNYSKHFSSNFLD----EQQRLKSLKL

AT2G21650.1 Homeodomain-like superfamily protein5.8e-2252.58Show/hide
Query:  SSSSSSSSVWSSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNYSKHFSSN----FLDEQQRLKSLKLQ
        S SS  S  W+ KQNK FE AL VYD+D+PDRW  +ARAVGGKT EE KR Y++LV D+ +IE G VP P+Y     ++      DE++R++S+KLQ
Subjt:  SSSSSSSSVWSSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNYSKHFSSN----FLDEQQRLKSLKLQ

AT4G39250.1 RAD-like 12.3e-2352.58Show/hide
Query:  SSSSSSSSSVWSSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNYSKH---FSSNFLDEQQRLKSLKLQ
        SS SS SS  W++KQNK FE AL  YD+D+P+RWQ +A+ VGGKT EEVKRHYE+LV+D+++IE G VP PNY       +     E++R+++++LQ
Subjt:  SSSSSSSSSVWSSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNYSKH---FSSNFLDEQQRLKSLKLQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTTCTTCTTCATCTTCAAGCTCGAGCGTTTGGAGTTCAAAGCAAAACAAGCTGTTCGAAAATGCTCTGACGGTGTACGACAAGGACTCGCCGGACCGGTGGCAGAA
GCTGGCGAGAGCCGTCGGCGGGAAGACGGCGGAGGAAGTGAAAAGGCACTACGAGATGCTGGTGGAGGATGTTCATAATATTGAGACCGGCAGAGTTCCTTTGCCCAATT
ACTCTAAACATTTCAGCTCCAACTTTCTTGATGAACAACAAAGATTGAAGAGTCTAAAGCTACAATGA
mRNA sequenceShow/hide mRNA sequence
GGGCAGAGGAATTTGCAGGTCAGAAAAAATAAAAATAAAAAATGAGTTCTTCTTCATCTTCAAGCTCGAGCGTTTGGAGTTCAAAGCAAAACAAGCTGTTCGAAAATGCT
CTGACGGTGTACGACAAGGACTCGCCGGACCGGTGGCAGAAGCTGGCGAGAGCCGTCGGCGGGAAGACGGCGGAGGAAGTGAAAAGGCACTACGAGATGCTGGTGGAGGA
TGTTCATAATATTGAGACCGGCAGAGTTCCTTTGCCCAATTACTCTAAACATTTCAGCTCCAACTTTCTTGATGAACAACAAAGATTGAAGAGTCTAAAGCTACAATGAT
TTGCAACAACAAACAAGATTGAAGTCAAAGAATAAAAGCTACTGCATTTCAACCAAAGTTCCAAACTGAAAAGCACTTGTTGATATGTATGAGAAAGAATATTCTACATG
TGAATTAAATTATATAGTTTTTTCCACTATAAAATGTCATATATTTAAATGAATTTACTATGGCATATGTATTTAATCAATCTCATGGCTTGTTATGCAATGTATAATTA
AATATATAAAATGGGTTGTCTTTCTCTCTCTA
Protein sequenceShow/hide protein sequence
MSSSSSSSSSVWSSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNYSKHFSSNFLDEQQRLKSLKLQ