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Tan0000563 (gene) of Snake gourd v1 genome

Gene IDTan0000563
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRNase H domain-containing protein
Genome locationLG01:8778435..8779866
RNA-Seq ExpressionTan0000563
SyntenyTan0000563
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]7.8e-1039.6Show/hide
Query:  RWKPPNSSQWKLNTDASWSPKWNRGGLDWLVRDEFGSPIISGCKVVTTKWSIKVLEAAAVVERLESILYLQLLCVPPVEVELDSSKVGVLLNQQEVDLSE
        +WKPP S+ WKLNT+A+W    N GG+ W++RDE G  I + C+++  + +I  LE  A+ E L +I   Q  C  P+ +E DS +   LL++Q  D +E
Subjt:  RWKPPNSSQWKLNTDASWSPKWNRGGLDWLVRDEFGSPIISGCKVVTTKWSIKVLEAAAVVERLESILYLQLLCVPPVEVELDSSKVGVLLNQQEVDLSE

Query:  V
        +
Subjt:  V
XP_022154990.1 uncharacterized protein LOC111022134 isoform X1 [Momordica charantia]1.3e-0941.94Show/hide
Query:  RWKPPNSSQWKLNTDASWSPKWNRGGLDWLVRDEFGSPIISGCKVVTTKWSIKVLEAAAVVERLESILYLQLLCVPPVEVELDSSKVGVLLNQ
        RWKPP S+ WKLNTDA+W    N  G+ W++RDE G  I +GC+++  + +I  LE  A+ E L +I   Q  C  P+ +E DS +   LL++
Subjt:  RWKPPNSSQWKLNTDASWSPKWNRGGLDWLVRDEFGSPIISGCKVVTTKWSIKVLEAAAVVERLESILYLQLLCVPPVEVELDSSKVGVLLNQ
XP_022154991.1 uncharacterized protein LOC111022134 isoform X2 [Momordica charantia]1.3e-0941.94Show/hide
Query:  RWKPPNSSQWKLNTDASWSPKWNRGGLDWLVRDEFGSPIISGCKVVTTKWSIKVLEAAAVVERLESILYLQLLCVPPVEVELDSSKVGVLLNQ
        RWKPP S+ WKLNTDA+W    N  G+ W++RDE G  I +GC+++  + +I  LE  A+ E L +I   Q  C  P+ +E DS +   LL++
Subjt:  RWKPPNSSQWKLNTDASWSPKWNRGGLDWLVRDEFGSPIISGCKVVTTKWSIKVLEAAAVVERLESILYLQLLCVPPVEVELDSSKVGVLLNQ
XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]2.7e-1038Show/hide
Query:  RWKPPNSSQWKLNTDASWSPKWNRGGLDWLVRDEFGSPIISGCKVVTTKWSIKVLEAAAVVERLESILYLQLLCVPPVEVELDSSKVGVLLNQQEVDLSE
        +W+PP    W LN DASWS   +RGG+ W++R   G  +++G + V    ++K+LEA+A++E L ++  L +L   P+ +E DS++V  LLN++  DL++
Subjt:  RWKPPNSSQWKLNTDASWSPKWNRGGLDWLVRDEFGSPIISGCKVVTTKWSIKVLEAAAVVERLESILYLQLLCVPPVEVELDSSKVGVLLNQQEVDLSE
XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]2.4e-1140.74Show/hide
Query:  RWKPPNSSQWKLNTDASWSPKWNRGGLDWLVRDEFGSPIISGCKVVTTKWSIKVLEAAAVVERLESILYLQLLCVP-------PVEVELDSSKVGVLLNQ
        RWKPP S+ WKLNTDA+W    N GG+ W++RDE G  I + C+++ T+ +I  LE  A+ E L +I   Q  C P       P+ +E DS +   LL++
Subjt:  RWKPPNSSQWKLNTDASWSPKWNRGGLDWLVRDEFGSPIISGCKVVTTKWSIKVLEAAAVVERLESILYLQLLCVP-------PVEVELDSSKVGVLLNQ

Query:  QEVDLSEV
        Q  D +E+
Subjt:  QEVDLSEV
TrEMBL top hitse value%identityAlignment
A0A6J1CP26 uncharacterized protein LOC1110134123.8e-1039.6Show/hide
Query:  RWKPPNSSQWKLNTDASWSPKWNRGGLDWLVRDEFGSPIISGCKVVTTKWSIKVLEAAAVVERLESILYLQLLCVPPVEVELDSSKVGVLLNQQEVDLSE
        +WKPP S+ WKLNT+A+W    N GG+ W++RDE G  I + C+++  + +I  LE  A+ E L +I   Q  C  P+ +E DS +   LL++Q  D +E
Subjt:  RWKPPNSSQWKLNTDASWSPKWNRGGLDWLVRDEFGSPIISGCKVVTTKWSIKVLEAAAVVERLESILYLQLLCVPPVEVELDSSKVGVLLNQQEVDLSE

Query:  V
        +
Subjt:  V
A0A6J1DL64 uncharacterized protein LOC111022134 isoform X16.4e-1041.94Show/hide
Query:  RWKPPNSSQWKLNTDASWSPKWNRGGLDWLVRDEFGSPIISGCKVVTTKWSIKVLEAAAVVERLESILYLQLLCVPPVEVELDSSKVGVLLNQ
        RWKPP S+ WKLNTDA+W    N  G+ W++RDE G  I +GC+++  + +I  LE  A+ E L +I   Q  C  P+ +E DS +   LL++
Subjt:  RWKPPNSSQWKLNTDASWSPKWNRGGLDWLVRDEFGSPIISGCKVVTTKWSIKVLEAAAVVERLESILYLQLLCVPPVEVELDSSKVGVLLNQ
A0A6J1DNV9 uncharacterized protein LOC1110224031.3e-1038Show/hide
Query:  RWKPPNSSQWKLNTDASWSPKWNRGGLDWLVRDEFGSPIISGCKVVTTKWSIKVLEAAAVVERLESILYLQLLCVPPVEVELDSSKVGVLLNQQEVDLSE
        +W+PP    W LN DASWS   +RGG+ W++R   G  +++G + V    ++K+LEA+A++E L ++  L +L   P+ +E DS++V  LLN++  DL++
Subjt:  RWKPPNSSQWKLNTDASWSPKWNRGGLDWLVRDEFGSPIISGCKVVTTKWSIKVLEAAAVVERLESILYLQLLCVPPVEVELDSSKVGVLLNQQEVDLSE
A0A6J1DQC9 uncharacterized protein LOC111022134 isoform X26.4e-1041.94Show/hide
Query:  RWKPPNSSQWKLNTDASWSPKWNRGGLDWLVRDEFGSPIISGCKVVTTKWSIKVLEAAAVVERLESILYLQLLCVPPVEVELDSSKVGVLLNQ
        RWKPP S+ WKLNTDA+W    N  G+ W++RDE G  I +GC+++  + +I  LE  A+ E L +I   Q  C  P+ +E DS +   LL++
Subjt:  RWKPPNSSQWKLNTDASWSPKWNRGGLDWLVRDEFGSPIISGCKVVTTKWSIKVLEAAAVVERLESILYLQLLCVPPVEVELDSSKVGVLLNQ
A0A6J1DSV1 uncharacterized protein LOC1110236081.2e-1140.74Show/hide
Query:  RWKPPNSSQWKLNTDASWSPKWNRGGLDWLVRDEFGSPIISGCKVVTTKWSIKVLEAAAVVERLESILYLQLLCVP-------PVEVELDSSKVGVLLNQ
        RWKPP S+ WKLNTDA+W    N GG+ W++RDE G  I + C+++ T+ +I  LE  A+ E L +I   Q  C P       P+ +E DS +   LL++
Subjt:  RWKPPNSSQWKLNTDASWSPKWNRGGLDWLVRDEFGSPIISGCKVVTTKWSIKVLEAAAVVERLESILYLQLLCVP-------PVEVELDSSKVGVLLNQ

Query:  QEVDLSEV
        Q  D +E+
Subjt:  QEVDLSEV
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G29090.1 Ribonuclease H-like superfamily protein2.3e-0434.02Show/hide
Query:  GRWKPPNSSQWKLNTDASWSPKWNRGGLDWLVRDEFGSPIISGCKVVTTKWSIKVLEAAAVVERLESILYLQLLCVPPVEVELDSSKVGVLLNQQEV
        GRW+PP     K NTDA+W+    R G+ W++R+E G     G + +    S  VLEA     R  ++L L       V  E DS  +  +LN  E+
Subjt:  GRWKPPNSSQWKLNTDASWSPKWNRGGLDWLVRDEFGSPIISGCKVVTTKWSIKVLEAAAVVERLESILYLQLLCVPPVEVELDSSKVGVLLNQQEV

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGCATCCGAAAAAGTTGGAGTTGGCGCTACGATTGGCTCTAAGTCGAGTCGTGGATTCGGATCCTTCTAGTCTTCTCTCAGGCCAGGTTGACATATCTCCTTCTAG
CCCATCTACCTCTGTCCCTTTTATCTCCACAAGGGGTTCCCCCAGTTGGGTGAACACCATTTTGGTTGCTTCGGGGCGTTGGAAGCCGCCCAACTCGAGTCAGTGGAAGT
TGAATACTGATGCATCCTGGTCACCAAAATGGAACCGCGGAGGCTTGGACTGGTTAGTTCGTGACGAGTTTGGTTCTCCCATAATCAGCGGATGCAAAGTGGTTACTACC
AAATGGTCGATCAAAGTTCTTGAAGCTGCTGCTGTGGTGGAACGTCTTGAAAGCATCCTCTATTTGCAGCTTTTGTGTGTTCCTCCCGTGGAGGTAGAGTTGGATTCTTC
AAAAGTGGGTGTTCTTCTGAACCAACAAGAAGTTGACTTGTCAGAAGTGAGTTCCGAGAAAGGAGAACCAAGCGGCCCACGAGCTGCCGCTTTGGCATCTTCTTTTGGGC
ATTTGGACTGGAAAGAGGGGTTTTCGGCTGATGTATTATCCTCCATCCTTGAGATGGAATAG
mRNA sequenceShow/hide mRNA sequence
ATGTTGCATCCGAAAAAGTTGGAGTTGGCGCTACGATTGGCTCTAAGTCGAGTCGTGGATTCGGATCCTTCTAGTCTTCTCTCAGGCCAGGTTGACATATCTCCTTCTAG
CCCATCTACCTCTGTCCCTTTTATCTCCACAAGGGGTTCCCCCAGTTGGGTGAACACCATTTTGGTTGCTTCGGGGCGTTGGAAGCCGCCCAACTCGAGTCAGTGGAAGT
TGAATACTGATGCATCCTGGTCACCAAAATGGAACCGCGGAGGCTTGGACTGGTTAGTTCGTGACGAGTTTGGTTCTCCCATAATCAGCGGATGCAAAGTGGTTACTACC
AAATGGTCGATCAAAGTTCTTGAAGCTGCTGCTGTGGTGGAACGTCTTGAAAGCATCCTCTATTTGCAGCTTTTGTGTGTTCCTCCCGTGGAGGTAGAGTTGGATTCTTC
AAAAGTGGGTGTTCTTCTGAACCAACAAGAAGTTGACTTGTCAGAAGTGAGTTCCGAGAAAGGAGAACCAAGCGGCCCACGAGCTGCCGCTTTGGCATCTTCTTTTGGGC
ATTTGGACTGGAAAGAGGGGTTTTCGGCTGATGTATTATCCTCCATCCTTGAGATGGAATAG
Protein sequenceShow/hide protein sequence
MLHPKKLELALRLALSRVVDSDPSSLLSGQVDISPSSPSTSVPFISTRGSPSWVNTILVASGRWKPPNSSQWKLNTDASWSPKWNRGGLDWLVRDEFGSPIISGCKVVTT
KWSIKVLEAAAVVERLESILYLQLLCVPPVEVELDSSKVGVLLNQQEVDLSEVSSEKGEPSGPRAAALASSFGHLDWKEGFSADVLSSILEME