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Tan0000565 (gene) of Snake gourd v1 genome

Gene IDTan0000565
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionProtein EXPORTIN 1A
Genome locationLG09:54188279..54189065
RNA-Seq ExpressionTan0000565
SyntenyTan0000565
Gene Ontology termsGO:0000055 - ribosomal large subunit export from nucleus (biological process)
GO:0000056 - ribosomal small subunit export from nucleus (biological process)
GO:0006611 - protein export from nucleus (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0005049 - nuclear export signal receptor activity (molecular function)
GO:0031267 - small GTPase binding (molecular function)
InterPro domainsIPR011989 - Armadillo-like helical


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE9464667.1 hypothetical protein C3L33_03460, partial [Rhododendron williamsianum]2.0e-0983.78Show/hide
Query:  LRVGENEPFISELLSSLPTTVADLEPHQIHTFYESVC
        ++VGENEPF+SELL+SLPTT+ADLEPHQIH+FYESVC
Subjt:  LRVGENEPFISELLSSLPTTVADLEPHQIHTFYESVC
KAF5725608.1 protein EXPORTIN 1A [Tripterygium wilfordii]3.3e-0994.44Show/hide
Query:  LRVGENEPFISELLSSLPTTVADLEPHQIHTFYESV
        L+VGE+EPFISELLSSLPTTVADLEPHQIHTFYESV
Subjt:  LRVGENEPFISELLSSLPTTVADLEPHQIHTFYESV
XP_022966430.1 protein EXPORTIN 1A [Cucurbita maxima]5.7e-0988.89Show/hide
Query:  LRVGENEPFISELLSSLPTTVADLEPHQIHTFYESV
        ++VGENEPF+SELL+SLPTTVADLEPHQIHTFYESV
Subjt:  LRVGENEPFISELLSSLPTTVADLEPHQIHTFYESV
XP_023535095.1 protein EXPORTIN 1A isoform X1 [Cucurbita pepo subsp. pepo]5.7e-0988.89Show/hide
Query:  LRVGENEPFISELLSSLPTTVADLEPHQIHTFYESV
        ++VGENEPF+SELL+SLPTTVADLEPHQIHTFYESV
Subjt:  LRVGENEPFISELLSSLPTTVADLEPHQIHTFYESV
XP_038696434.1 protein EXPORTIN 1A-like [Tripterygium wilfordii]3.3e-0994.44Show/hide
Query:  LRVGENEPFISELLSSLPTTVADLEPHQIHTFYESV
        L+VGE+EPFISELLSSLPTTVADLEPHQIHTFYESV
Subjt:  LRVGENEPFISELLSSLPTTVADLEPHQIHTFYESV
TrEMBL top hitse value%identityAlignment
A0A6A4MDT3 Importin N-terminal domain-containing protein (Fragment)9.5e-1083.78Show/hide
Query:  LRVGENEPFISELLSSLPTTVADLEPHQIHTFYESVC
        ++VGENEPF+SELL+SLPTT+ADLEPHQIH+FYESVC
Subjt:  LRVGENEPFISELLSSLPTTVADLEPHQIHTFYESVC
A0A6J1CGI1 protein EXPORTIN 1A2.8e-0988.89Show/hide
Query:  LRVGENEPFISELLSSLPTTVADLEPHQIHTFYESV
        ++VGENEPF+SELL+SLPTTVADLEPHQIHTFYESV
Subjt:  LRVGENEPFISELLSSLPTTVADLEPHQIHTFYESV
A0A6J1HRL8 protein EXPORTIN 1A2.8e-0988.89Show/hide
Query:  LRVGENEPFISELLSSLPTTVADLEPHQIHTFYESV
        ++VGENEPF+SELL+SLPTTVADLEPHQIHTFYESV
Subjt:  LRVGENEPFISELLSSLPTTVADLEPHQIHTFYESV
A0A6N2N5U9 Uncharacterized protein (Fragment)1.2e-0986.49Show/hide
Query:  LRVGENEPFISELLSSLPTTVADLEPHQIHTFYESVC
        ++VGE+EPF+SELLS LPTTVADLEPHQIHTFYESVC
Subjt:  LRVGENEPFISELLSSLPTTVADLEPHQIHTFYESVC
A0A7J7BUU8 Protein EXPORTIN 1A1.6e-0994.44Show/hide
Query:  LRVGENEPFISELLSSLPTTVADLEPHQIHTFYESV
        L+VGE+EPFISELLSSLPTTVADLEPHQIHTFYESV
Subjt:  LRVGENEPFISELLSSLPTTVADLEPHQIHTFYESV
SwissProt top hitse value%identityAlignment
F4IZR5 Protein EXPORTIN 1B1.0e-0875Show/hide
Query:  LRVGENEPFISELLSSLPTTVADLEPHQIHTFYESV
        ++VGE+EPF+SELLS L T V DL+PHQIHTFYESV
Subjt:  LRVGENEPFISELLSSLPTTVADLEPHQIHTFYESV
O14980 Exportin-16.8e-0551.35Show/hide
Query:  RLRVGENEPFISELLSSLPTTVADLEPHQIHTFYESV
        +++VGE  PFI E+L+++ T + DL+P Q+HTFYE+V
Subjt:  RLRVGENEPFISELLSSLPTTVADLEPHQIHTFYESV
Q54EV7 Exportin-11.8e-0563.89Show/hide
Query:  LRVGENEPFISELLSSLPTTVADLEPHQIHTFYESV
        L+V E++PFI+ELL+ L TT+A LE  QIHTFYE+V
Subjt:  LRVGENEPFISELLSSLPTTVADLEPHQIHTFYESV
Q6P5F9 Exportin-16.8e-0551.35Show/hide
Query:  RLRVGENEPFISELLSSLPTTVADLEPHQIHTFYESV
        +++VGE  PFI E+L+++ T + DL+P Q+HTFYE+V
Subjt:  RLRVGENEPFISELLSSLPTTVADLEPHQIHTFYESV
Q9SMV6 Protein EXPORTIN 1A2.0e-0977.78Show/hide
Query:  LRVGENEPFISELLSSLPTTVADLEPHQIHTFYESV
        ++VGENEPF+SELL+ L TTV DLEPHQIH+FYESV
Subjt:  LRVGENEPFISELLSSLPTTVADLEPHQIHTFYESV
Arabidopsis top hitse value%identityAlignment
AT3G03110.1 exportin 1B7.2e-1075Show/hide
Query:  LRVGENEPFISELLSSLPTTVADLEPHQIHTFYESV
        ++VGE+EPF+SELLS L T V DL+PHQIHTFYESV
Subjt:  LRVGENEPFISELLSSLPTTVADLEPHQIHTFYESV
AT5G17020.1 exportin 1A1.4e-1077.78Show/hide
Query:  LRVGENEPFISELLSSLPTTVADLEPHQIHTFYESV
        ++VGENEPF+SELL+ L TTV DLEPHQIH+FYESV
Subjt:  LRVGENEPFISELLSSLPTTVADLEPHQIHTFYESV
AT5G17020.2 exportin 1A1.4e-1077.78Show/hide
Query:  LRVGENEPFISELLSSLPTTVADLEPHQIHTFYESV
        ++VGENEPF+SELL+ L TTV DLEPHQIH+FYESV
Subjt:  LRVGENEPFISELLSSLPTTVADLEPHQIHTFYESV

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGGGGGATTAGCAACACCTCGGTTTCATTTTTTTCTTTTCTTTCTATTTAAGAACCGGTGGGGCAACGCCGAAGAACTGGAGAAGAAGGATGAAGAAGACGAAGT
CGGAGAACTGGAGTGGAGTCTTGGATTGGAGAAGTTGAAGAGAAGAAATGAAAGGGAAATGGGGAAGAACCAAGAAGACAAGCGACTAAGGGTTGGAGAAAATGAGCCAT
TCATTTCTGAACTTCTTTCTAGTCTTCCAACAACAGTGGCAGATCTTGAGCCTCATCAAATTCATACTTTTTATGAATCTGTATGTCTATAG
mRNA sequenceShow/hide mRNA sequence
ATGGATGGGGGATTAGCAACACCTCGGTTTCATTTTTTTCTTTTCTTTCTATTTAAGAACCGGTGGGGCAACGCCGAAGAACTGGAGAAGAAGGATGAAGAAGACGAAGT
CGGAGAACTGGAGTGGAGTCTTGGATTGGAGAAGTTGAAGAGAAGAAATGAAAGGGAAATGGGGAAGAACCAAGAAGACAAGCGACTAAGGGTTGGAGAAAATGAGCCAT
TCATTTCTGAACTTCTTTCTAGTCTTCCAACAACAGTGGCAGATCTTGAGCCTCATCAAATTCATACTTTTTATGAATCTGTATGTCTATAG
Protein sequenceShow/hide protein sequence
MDGGLATPRFHFFLFFLFKNRWGNAEELEKKDEEDEVGELEWSLGLEKLKRRNEREMGKNQEDKRLRVGENEPFISELLSSLPTTVADLEPHQIHTFYESVCL