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Tan0000571 (gene) of Snake gourd v1 genome

Gene IDTan0000571
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationLG05:58619322..58638183
RNA-Seq ExpressionTan0000571
SyntenyTan0000571
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0060199.1 uncharacterized protein E6C27_scaffold386G00120 [Cucumis melo var. makuwa]1.2e-0745.98Show/hide
Query:  RPRANRSSVRVKTL--------------------VEIELPVPDNLP---YMFISSAGQQVLLRGNNVCWLHAVFRAKLAGFSGGGVT
        RPR NR S++   L                    VEIELPVPD LP     F S++    ++RG++VCWLHAVFRAK AG  GGGVT
Subjt:  RPRANRSSVRVKTL--------------------VEIELPVPDNLP---YMFISSAGQQVLLRGNNVCWLHAVFRAKLAGFSGGGVT

KAA0065516.1 uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa]1.9e-0547.3Show/hide
Query:  PRANRSSVRVKTL------VEIELPVPDNLPYMFISSAGQQ---VLLRGNNVCWLHAVFRAKLAGFSGGGVTQL
        P   RS + VKT       VEIEL VPD LP    SS        ++RG++VCWLH VFRAK  G  GG VT +
Subjt:  PRANRSSVRVKTL------VEIELPVPDNLPYMFISSAGQQ---VLLRGNNVCWLHAVFRAKLAGFSGGGVTQL

KAA0066738.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.1e-0552.46Show/hide
Query:  VEIELPVPDNLPYMFISSA-----------GQQVLLRGNNVCWLHAVFRAKLAGFSGGGVT
        VEIELP PD LP +F   +           G   ++RG++VCWLHAVFRAK AG  GGGVT
Subjt:  VEIELPVPDNLPYMFISSA-----------GQQVLLRGNNVCWLHAVFRAKLAGFSGGGVT

TYK11725.1 uncharacterized protein E5676_scaffold304G00370 [Cucumis melo var. makuwa]8.6e-0650.82Show/hide
Query:  LVEIELPVPDNLPYMFISSA-----------GQQVLLRGNNVCWLHAVFRAKLAGFSGGGV
        +VEIELPVPD LP +F   +           G   ++RG++VCWLHAV RAK+AG  GGGV
Subjt:  LVEIELPVPDNLPYMFISSA-----------GQQVLLRGNNVCWLHAVFRAKLAGFSGGGV

TYK14495.1 putative polyprotein [Cucumis melo var. makuwa]6.6e-0658.49Show/hide
Query:  KTLVEIELPVPDNLP---YMFISSAGQQVLLRGNNVCWLHAVFRAKLAGFSGG
        K +VEIELPVPD LP     F S+     ++RG++VCWLHAVFRAK AG  GG
Subjt:  KTLVEIELPVPDNLP---YMFISSAGQQVLLRGNNVCWLHAVFRAKLAGFSGG

TrEMBL top hitse value%identityAlignment
A0A5A7VGQ5 Uncharacterized protein9.3e-0647.3Show/hide
Query:  PRANRSSVRVKTL------VEIELPVPDNLPYMFISSAGQQ---VLLRGNNVCWLHAVFRAKLAGFSGGGVTQL
        P   RS + VKT       VEIEL VPD LP    SS        ++RG++VCWLH VFRAK  G  GG VT +
Subjt:  PRANRSSVRVKTL------VEIELPVPDNLPYMFISSAGQQ---VLLRGNNVCWLHAVFRAKLAGFSGGGVTQL

A0A5D3BAD1 Retrotrans_gag domain-containing protein5.8e-0845.98Show/hide
Query:  RPRANRSSVRVKTL--------------------VEIELPVPDNLP---YMFISSAGQQVLLRGNNVCWLHAVFRAKLAGFSGGGVT
        RPR NR S++   L                    VEIELPVPD LP     F S++    ++RG++VCWLHAVFRAK AG  GGGVT
Subjt:  RPRANRSSVRVKTL--------------------VEIELPVPDNLP---YMFISSAGQQVLLRGNNVCWLHAVFRAKLAGFSGGGVT

A0A5D3CJL4 Retrotrans_gag domain-containing protein4.2e-0650.82Show/hide
Query:  LVEIELPVPDNLPYMFISSA-----------GQQVLLRGNNVCWLHAVFRAKLAGFSGGGV
        +VEIELPVPD LP +F   +           G   ++RG++VCWLHAV RAK+AG  GGGV
Subjt:  LVEIELPVPDNLPYMFISSA-----------GQQVLLRGNNVCWLHAVFRAKLAGFSGGGV

A0A5D3CSJ5 Putative polyprotein3.2e-0658.49Show/hide
Query:  KTLVEIELPVPDNLP---YMFISSAGQQVLLRGNNVCWLHAVFRAKLAGFSGG
        K +VEIELPVPD LP     F S+     ++RG++VCWLHAVFRAK AG  GG
Subjt:  KTLVEIELPVPDNLP---YMFISSAGQQVLLRGNNVCWLHAVFRAKLAGFSGG

A0A5D3DVW9 DNA/RNA polymerases superfamily protein5.5e-0652.46Show/hide
Query:  VEIELPVPDNLPYMFISSA-----------GQQVLLRGNNVCWLHAVFRAKLAGFSGGGVT
        VEIELP PD LP +F   +           G   ++RG++VCWLHAVFRAK AG  GGGVT
Subjt:  VEIELPVPDNLPYMFISSA-----------GQQVLLRGNNVCWLHAVFRAKLAGFSGGGVT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTTTGTTCTAGGATTGCCAAAGACTAGGAGACATCATGATAGCATTTTTGTGGTGGTTGATAGCTTCCGAGGTATTTCTGAACCAATCTATTGGGAATTTCAATT
TCATGTTCTAAAACATGGTTTTGGTTTGTTTGACAGGCCAAGAGCGAATAGGTCGAGTGTACGGGTCAAGACTCTAGTAGAGATCGAGCTCCCGGTGCCTGATAACCTGC
CTTATATGTTTATCAGTAGCGCAGGTCAACAGGTATTGTTAAGAGGTAACAATGTCTGTTGGCTTCATGCCGTCTTTCGGGCTAAGTTAGCAGGTTTCTCGGGAGGGGGT
GTGACACAGCTTGTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGATTTTGTTCTAGGATTGCCAAAGACTAGGAGACATCATGATAGCATTTTTGTGGTGGTTGATAGCTTCCGAGGTATTTCTGAACCAATCTATTGGGAATTTCAATT
TCATGTTCTAAAACATGGTTTTGGTTTGTTTGACAGGCCAAGAGCGAATAGGTCGAGTGTACGGGTCAAGACTCTAGTAGAGATCGAGCTCCCGGTGCCTGATAACCTGC
CTTATATGTTTATCAGTAGCGCAGGTCAACAGGTATTGTTAAGAGGTAACAATGTCTGTTGGCTTCATGCCGTCTTTCGGGCTAAGTTAGCAGGTTTCTCGGGAGGGGGT
GTGACACAGCTTGTCTGA
Protein sequenceShow/hide protein sequence
MDFVLGLPKTRRHHDSIFVVVDSFRGISEPIYWEFQFHVLKHGFGLFDRPRANRSSVRVKTLVEIELPVPDNLPYMFISSAGQQVLLRGNNVCWLHAVFRAKLAGFSGGG
VTQLV