; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0000572 (gene) of Snake gourd v1 genome

Gene IDTan0000572
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionCCHC-type domain-containing protein
Genome locationLG11:25979688..25985641
RNA-Seq ExpressionTan0000572
SyntenyTan0000572
Gene Ontology termsNA
InterPro domainsIPR025836 - Zinc knuckle CX2CX4HX4C
IPR040256 - Uncharacterized protein At4g02000-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PUZ69939.1 hypothetical protein GQ55_2G170400 [Panicum hallii var. hallii]3.0e-1445.57Show/hide
Query:  MAQIFGNRLGVFQKVDLNDSETCWGSSLCLKVRIDVTMPLKRGLNVKIGTMAEELWCPVTYEKLPDFCYCCGRIGHLDR
        M +  G+ +G F  ++L D ET  G  L +K ++D+  PL RG  + +G   + +WCP+ YE LPDFCY CGRIGHLD+
Subjt:  MAQIFGNRLGVFQKVDLNDSETCWGSSLCLKVRIDVTMPLKRGLNVKIGTMAEELWCPVTYEKLPDFCYCCGRIGHLDR

XP_022156185.1 uncharacterized protein LOC111023135 [Momordica charantia]8.7e-1444.83Show/hide
Query:  MAQIFGNRLGVFQKVDLNDSETCWGSSLCLKVRIDVTMPLKRGLNVKIGTMAEELWCPVTYEKLPDFCYCCGRIGHLDRSWARSYLS
        MA   GN +G F  VD N+    WG+SL ++V ID+T PL+RG+ + I       W P+ YE+LPDFCY CG IGH        YL+
Subjt:  MAQIFGNRLGVFQKVDLNDSETCWGSSLCLKVRIDVTMPLKRGLNVKIGTMAEELWCPVTYEKLPDFCYCCGRIGHLDRSWARSYLS

XP_039815069.1 uncharacterized protein LOC120677956 [Panicum virgatum]3.0e-1448.05Show/hide
Query:  QIFGNRLGVFQKVDLNDSETCWGSSLCLKVRIDVTMPLKRGLNVKIGTMAEELWCPVTYEKLPDFCYCCGRIGHLDR
        +  G  +G F  +DL++ +T  G  L +KVR+D+  PL RG+ V +G   + LWCPV YE LPDFCY CG IGH D+
Subjt:  QIFGNRLGVFQKVDLNDSETCWGSSLCLKVRIDVTMPLKRGLNVKIGTMAEELWCPVTYEKLPDFCYCCGRIGHLDR

XP_039815364.1 uncharacterized protein LOC120678302 [Panicum virgatum]2.4e-1653.33Show/hide
Query:  GNRLGVFQKVDLNDSETCWGSSLCLKVRIDVTMPLKRGLNVKIGTMAEELWCPVTYEKLPDFCYCCGRIGHLDRS
        G  LG F +VDL + E   G  L +KVRI++  PL+RG+ + +G  A+E WCP+TYE LPDFCY CGRIGH D++
Subjt:  GNRLGVFQKVDLNDSETCWGSSLCLKVRIDVTMPLKRGLNVKIGTMAEELWCPVTYEKLPDFCYCCGRIGHLDRS

XP_039827601.1 uncharacterized protein LOC120689378 [Panicum virgatum]1.6e-1552Show/hide
Query:  GNRLGVFQKVDLNDSETCWGSSLCLKVRIDVTMPLKRGLNVKIGTMAEELWCPVTYEKLPDFCYCCGRIGHLDRS
        G  LG F +VDL +     G  L +KVRI++  PL+RG+ + +G  A+E WCP+TYE LPDFCY CGRIGH D++
Subjt:  GNRLGVFQKVDLNDSETCWGSSLCLKVRIDVTMPLKRGLNVKIGTMAEELWCPVTYEKLPDFCYCCGRIGHLDRS

TrEMBL top hitse value%identityAlignment
A0A2T7EQ43 CCHC-type domain-containing protein1.4e-1445.57Show/hide
Query:  MAQIFGNRLGVFQKVDLNDSETCWGSSLCLKVRIDVTMPLKRGLNVKIGTMAEELWCPVTYEKLPDFCYCCGRIGHLDR
        M +  G+ +G F  ++L D ET  G  L +K ++D+  PL RG  + +G   + +WCP+ YE LPDFCY CGRIGHLD+
Subjt:  MAQIFGNRLGVFQKVDLNDSETCWGSSLCLKVRIDVTMPLKRGLNVKIGTMAEELWCPVTYEKLPDFCYCCGRIGHLDR

A0A3L6RLG8 Retrotransposon protein, putative, unclassified9.4e-1449.33Show/hide
Query:  GNRLGVFQKVDLNDSETCWGSSLCLKVRIDVTMPLKRGLNVKIGTMAEELWCPVTYEKLPDFCYCCGRIGHLDRS
        G  +G F  +DL++ ++  G  L +KVR+D+  PL R + V +G   + LWCPV YE LPDFCY CG IGH DRS
Subjt:  GNRLGVFQKVDLNDSETCWGSSLCLKVRIDVTMPLKRGLNVKIGTMAEELWCPVTYEKLPDFCYCCGRIGHLDRS

A0A6J1DU55 uncharacterized protein LOC1110231354.2e-1444.83Show/hide
Query:  MAQIFGNRLGVFQKVDLNDSETCWGSSLCLKVRIDVTMPLKRGLNVKIGTMAEELWCPVTYEKLPDFCYCCGRIGHLDRSWARSYLS
        MA   GN +G F  VD N+    WG+SL ++V ID+T PL+RG+ + I       W P+ YE+LPDFCY CG IGH        YL+
Subjt:  MAQIFGNRLGVFQKVDLNDSETCWGSSLCLKVRIDVTMPLKRGLNVKIGTMAEELWCPVTYEKLPDFCYCCGRIGHLDRSWARSYLS

K3ZNG2 CCHC-type domain-containing protein3.2e-1444.3Show/hide
Query:  AQIFGNRLGVFQKVDLNDSETCWGSSLCLKVRIDVTMPLKRGLNVKIGTMAEELWCPVTYEKLPDFCYCCGRIGHLDRS
        A++ G+  G F +VD    +   G  L +KVR+D+ +PL+RG+ V +G    + WCPV YE LP+FCY CG IGH+D++
Subjt:  AQIFGNRLGVFQKVDLNDSETCWGSSLCLKVRIDVTMPLKRGLNVKIGTMAEELWCPVTYEKLPDFCYCCGRIGHLDRS

K4AML8 CCHC-type domain-containing protein4.2e-1444.3Show/hide
Query:  AQIFGNRLGVFQKVDLNDSETCWGSSLCLKVRIDVTMPLKRGLNVKIGTMAEELWCPVTYEKLPDFCYCCGRIGHLDRS
        A++ G+  G F +VD    +   G  L +KVR+D+ +PL+RG+ V +G    + WCPV YE LP+FCY CG IGH D++
Subjt:  AQIFGNRLGVFQKVDLNDSETCWGSSLCLKVRIDVTMPLKRGLNVKIGTMAEELWCPVTYEKLPDFCYCCGRIGHLDRS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCACAAATTTTTGGAAATCGCCTCGGTGTGTTCCAGAAGGTGGACTTGAACGACTCGGAAACATGCTGGGGAAGCTCCTTGTGCCTGAAGGTTCGGATCGATGTCAC
CATGCCTCTGAAACGGGGATTAAATGTCAAAATAGGAACTATGGCAGAGGAGTTATGGTGCCCTGTCACCTACGAGAAGCTTCCCGACTTTTGCTACTGTTGTGGGAGAA
TCGGGCATCTTGATAGGAGCTGGGCACGATCGTATCTGTCAGATAGCAAAGGAAAAGGAAGAGGAAGAGGTGTTCACGACAGAGGATCGAGAGACACAAAGAAGGTTGTG
GATGAAGATATAGAAGAAGACTCATCAATGGACTTGAGTTCAGGAACAAATTTACATACCAGACGCAAACAAAAAACATCCTTCGATACGAGAAATTCGGATAAGGATCG
TCGAAGGCAGTTAGACGAAATTGAAGGGCATTCAAGACAGGATCGAAACGGAAAATTCAGAGGGCTACCAGAGGTTTCAAGAGAGCTCGTTTTCGCTAATGAAGGAGATG
AAGACGTTTCAAAAATGGAAATTAATTCCTCATCTGTAGTTGCGTCACGTGCGGTTGATGGAAGAGGTAAATTCGAACAGGTGGCGATGAAAGGGATTTCGATTTCGGAT
TCCACAACTGGGCCTGAGTTAATGGGTTTTAATGGCAAAGGAAAGGAACCTCGGGGAATTGGGCTGACAGAGGACTTTTGGCAGGCTGATGGGTTGGATTTTCAAATGGG
CTCCTCATCTAAGAACAACCAGAATTATAGTGGGATGCTCAATTTGCAAAAGACGGGGAAAGCCAAAAAAGGGAAAAATGAAGTGGATGTTAGTTCCCTTCTTAAAGAGG
ATGGGACATGGGATGCTGGGAAAATACAACATCATTTCTTATCTGAAGACGCTGAGAACATTCTTAAGATACCCCAGACTGAGGCGATGGGATCTTCGTCTTCGTCCCTT
TTCTCCAGTCGTAGTGTTGTAGTTGTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCACAAATTTTTGGAAATCGCCTCGGTGTGTTCCAGAAGGTGGACTTGAACGACTCGGAAACATGCTGGGGAAGCTCCTTGTGCCTGAAGGTTCGGATCGATGTCAC
CATGCCTCTGAAACGGGGATTAAATGTCAAAATAGGAACTATGGCAGAGGAGTTATGGTGCCCTGTCACCTACGAGAAGCTTCCCGACTTTTGCTACTGTTGTGGGAGAA
TCGGGCATCTTGATAGGAGCTGGGCACGATCGTATCTGTCAGATAGCAAAGGAAAAGGAAGAGGAAGAGGTGTTCACGACAGAGGATCGAGAGACACAAAGAAGGTTGTG
GATGAAGATATAGAAGAAGACTCATCAATGGACTTGAGTTCAGGAACAAATTTACATACCAGACGCAAACAAAAAACATCCTTCGATACGAGAAATTCGGATAAGGATCG
TCGAAGGCAGTTAGACGAAATTGAAGGGCATTCAAGACAGGATCGAAACGGAAAATTCAGAGGGCTACCAGAGGTTTCAAGAGAGCTCGTTTTCGCTAATGAAGGAGATG
AAGACGTTTCAAAAATGGAAATTAATTCCTCATCTGTAGTTGCGTCACGTGCGGTTGATGGAAGAGGTAAATTCGAACAGGTGGCGATGAAAGGGATTTCGATTTCGGAT
TCCACAACTGGGCCTGAGTTAATGGGTTTTAATGGCAAAGGAAAGGAACCTCGGGGAATTGGGCTGACAGAGGACTTTTGGCAGGCTGATGGGTTGGATTTTCAAATGGG
CTCCTCATCTAAGAACAACCAGAATTATAGTGGGATGCTCAATTTGCAAAAGACGGGGAAAGCCAAAAAAGGGAAAAATGAAGTGGATGTTAGTTCCCTTCTTAAAGAGG
ATGGGACATGGGATGCTGGGAAAATACAACATCATTTCTTATCTGAAGACGCTGAGAACATTCTTAAGATACCCCAGACTGAGGCGATGGGATCTTCGTCTTCGTCCCTT
TTCTCCAGTCGTAGTGTTGTAGTTGTTTAA
Protein sequenceShow/hide protein sequence
MAQIFGNRLGVFQKVDLNDSETCWGSSLCLKVRIDVTMPLKRGLNVKIGTMAEELWCPVTYEKLPDFCYCCGRIGHLDRSWARSYLSDSKGKGRGRGVHDRGSRDTKKVV
DEDIEEDSSMDLSSGTNLHTRRKQKTSFDTRNSDKDRRRQLDEIEGHSRQDRNGKFRGLPEVSRELVFANEGDEDVSKMEINSSSVVASRAVDGRGKFEQVAMKGISISD
STTGPELMGFNGKGKEPRGIGLTEDFWQADGLDFQMGSSSKNNQNYSGMLNLQKTGKAKKGKNEVDVSSLLKEDGTWDAGKIQHHFLSEDAENILKIPQTEAMGSSSSSL
FSSRSVVVV