CuGenDBv2

Gene ID	Tan0000626
Organism	Trichosanthes anguina (Snake gourd v1)
Description	40S ribosomal protein S21
Genome location	LG06:79395746..79399654
RNA-Seq Expression	Tan0000626
Synteny	Tan0000626
Gene Ontology terms	GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process) GO:0000461 - endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process) GO:0006412 - translation (biological process) GO:0022627 - cytosolic small ribosomal subunit (cellular component) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR001931 - Ribosomal protein S21e IPR018279 - Ribosomal protein S21e, conserved site IPR038579 - Ribosomal protein S21e superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004134210.2 40S ribosomal protein S21-2 [Cucumis sativus]

2.7e-38

96.34

Show/hide

Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGVYTGQFSTFALCGFIRAQGDADSALDRLWQKKKIDVRQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENG+YTGQFSTFALCGFIRAQGDADSALDRLWQKKK++VRQQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGVYTGQFSTFALCGFIRAQGDADSALDRLWQKKKIDVRQQ

XP_004143089.1 40S ribosomal protein S21-2 [Cucumis sativus]

8.0e-38

96.34

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGVYTGQFSTFALCGFIRAQGDADSALDRLWQKKKIDVRQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENG+YTGQFSTFALCGFIRAQGDADSALDRLWQKKK +VRQQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGVYTGQFSTFALCGFIRAQGDADSALDRLWQKKKIDVRQQ

XP_022138287.1 40S ribosomal protein S21-2 [Momordica charantia]

6.1e-38

95.12

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGVYTGQFSTFALCGFIRAQGDADSALDRLWQKKKIDVRQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGH+DENG+YTGQFSTFALCGFIRAQGDADSALDRLWQKKK++VRQQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGVYTGQFSTFALCGFIRAQGDADSALDRLWQKKKIDVRQQ

XP_022930553.1 40S ribosomal protein S21-2-like [Cucurbita moschata]

8.0e-38

93.9

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGVYTGQFSTFALCGFIRAQGDADSALDRLWQKKKIDVRQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQIN+GHLDENG+YTGQFSTFALCG+IRAQGDADSALDRLWQKKK++VRQQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGVYTGQFSTFALCGFIRAQGDADSALDRLWQKKKIDVRQQ

XP_022959410.1 40S ribosomal protein S21-2 isoform X2 [Cucurbita moschata]

1.4e-37

92.68

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGVYTGQFSTFALCGFIRAQGDADSALDRLWQKKKIDVRQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQIN+GHLDENG+YTGQFSTFALCG+IRAQGDADSA+DRLWQKKK++VRQQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGVYTGQFSTFALCGFIRAQGDADSALDRLWQKKKIDVRQQ

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L7W3 40S ribosomal protein S21

1.3e-38

96.34

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGVYTGQFSTFALCGFIRAQGDADSALDRLWQKKKIDVRQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENG+YTGQFSTFALCGFIRAQGDADSALDRLWQKKK++VRQQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGVYTGQFSTFALCGFIRAQGDADSALDRLWQKKKIDVRQQ

A0A1S4DSM1 40S ribosomal protein S21

1.3e-38

96.34

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGVYTGQFSTFALCGFIRAQGDADSALDRLWQKKKIDVRQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENG+YTGQFSTFALCGFIRAQGDADSALDRLWQKKK++VRQQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGVYTGQFSTFALCGFIRAQGDADSALDRLWQKKKIDVRQQ

A0A5D3CXC9 40S ribosomal protein S21

1.3e-38

96.34

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGVYTGQFSTFALCGFIRAQGDADSALDRLWQKKKIDVRQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENG+YTGQFSTFALCGFIRAQGDADSALDRLWQKKK++VRQQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGVYTGQFSTFALCGFIRAQGDADSALDRLWQKKKIDVRQQ

A0A6J1CCM4 40S ribosomal protein S21

2.9e-38

95.12

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGVYTGQFSTFALCGFIRAQGDADSALDRLWQKKKIDVRQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGH+DENG+YTGQFSTFALCGFIRAQGDADSALDRLWQKKK++VRQQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGVYTGQFSTFALCGFIRAQGDADSALDRLWQKKKIDVRQQ

A0A6J1KDN2 40S ribosomal protein S21

3.9e-38

93.9

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGVYTGQFSTFALCGFIRAQGDADSALDRLWQKKKIDVRQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQIN+GHLDENG+YTGQFSTFALCG+IRAQGDADSALDRLWQKKK++VRQQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGVYTGQFSTFALCGFIRAQGDADSALDRLWQKKKIDVRQQ

SwissProt top hits

e value

%identity

Alignment

P35687 40S ribosomal protein S21

2.5e-34

79.27

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGVYTGQFSTFALCGFIRAQGDADSALDRLWQKKKIDVRQQ
        MQNEEG++ +LY+PRKCSATNR+IT+KDHASVQINIGH+DENG+Y G+F+TFAL GFIRAQGDADSALDRLWQK+K +V+QQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGVYTGQFSTFALCGFIRAQGDADSALDRLWQKKKIDVRQQ

Q3E902 40S ribosomal protein S21-2

7.0e-37

83.95

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGVYTGQFSTFALCGFIRAQGDADSALDRLWQKKKIDVRQ
        MQNEEG++TELYIPRKCSATNRLITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RAQGDADS +DRLWQKKK++ +Q
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGVYTGQFSTFALCGFIRAQGDADSALDRLWQKKKIDVRQ

Q41852 40S ribosomal protein S21

2.1e-33

77.78

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGVYTGQFSTFALCGFIRAQGDADSALDRLWQKKKIDVRQ
        MQNEEGK  +LY+PRKCSATNR+IT+KDHASVQINIGHLD NG+Y G F+TFAL GF+RAQGDADS+LDRLWQKKK +++Q
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGVYTGQFSTFALCGFIRAQGDADSALDRLWQKKKIDVRQ

Q9M337 40S ribosomal protein S21-1

1.0e-35

79.27

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGVYTGQFSTFALCGFIRAQGDADSALDRLWQKKKIDVRQQ
        M+N+ G++TELYIPRKCSATNR+ITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RAQGDADS +DRLWQKKK++ +QQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGVYTGQFSTFALCGFIRAQGDADSALDRLWQKKKIDVRQQ

Q9SMI2 40S ribosomal protein S21

3.6e-25

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDEN-GVYTGQFSTFALCGFIRAQGDADSALDRLWQK
        MQN+EGKI +LYIPRKCSATNRLI++ DHA+VQIN+GH+D N G+YTG ++TFALCGF+R+ G++D+AL+RL  K
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDEN-GVYTGQFSTFALCGFIRAQGDADSALDRLWQK

Arabidopsis top hits

e value

%identity

Alignment

AT3G53890.1 Ribosomal protein S21e

7.2e-37

79.27

Show/hide

Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGVYTGQFSTFALCGFIRAQGDADSALDRLWQKKKIDVRQQ
        M+N+ G++TELYIPRKCSATNR+ITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RAQGDADS +DRLWQKKK++ +QQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGVYTGQFSTFALCGFIRAQGDADSALDRLWQKKKIDVRQQ

AT3G53890.2 Ribosomal protein S21e

7.2e-37

79.27

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGVYTGQFSTFALCGFIRAQGDADSALDRLWQKKKIDVRQQ
        M+N+ G++TELYIPRKCSATNR+ITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RAQGDADS +DRLWQKKK++ +QQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGVYTGQFSTFALCGFIRAQGDADSALDRLWQKKKIDVRQQ

AT5G27700.1 Ribosomal protein S21e

5.0e-38

83.95

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGVYTGQFSTFALCGFIRAQGDADSALDRLWQKKKIDVRQ
        MQNEEG++TELYIPRKCSATNRLITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RAQGDADS +DRLWQKKK++ +Q
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGVYTGQFSTFALCGFIRAQGDADSALDRLWQKKKIDVRQ

Sequences

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CDS sequence

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ATGCAGAACGAAGAAGGAAAGATCACCGAGCTTTACATTCCTAGGAAGTGCTCTGCAACAAATCGACTCATCACCTCCAAGGATCACGCCTCGGTTCAGATTAACATTGG
TCACTTGGACGAGAACGGCGTCTATACCGGCCAATTCTCCACTTTCGCTCTCTGCGGATTTATCCGTGCTCAGGGAGATGCCGACAGTGCTTTAGATAGGTTGTGGCAAA
AGAAGAAAATTGATGTTCGTCAACAATAG

mRNA sequence

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TCAGAATCAGAACAATCATCTTCCTCTCTCACAGCAGTTCTTAGCAAGTTAGCAGGCTCTGGTCGTGGAAACCAAAATGCAGAACGAAGAAGGAAAGATCACCGAGCTTT
ACATTCCTAGGAAGTGCTCTGCAACAAATCGACTCATCACCTCCAAGGATCACGCCTCGGTTCAGATTAACATTGGTCACTTGGACGAGAACGGCGTCTATACCGGCCAA
TTCTCCACTTTCGCTCTCTGCGGATTTATCCGTGCTCAGGGAGATGCCGACAGTGCTTTAGATAGGTTGTGGCAAAAGAAGAAAATTGATGTTCGTCAACAATAGAAATT
TAGCATTTCTACTCCCGAAAATTTACTGGAGAGCGGACGTTGCACCGGATGGGCTGGAAAAATTAAACGGACGTATTTATTAAGAATGTAGAAAAAAATTGCAATTTATT
TCTCTTCAATTTTGGAAATAACTTTTGCAGGATCTTACTTTTGCAGAGTATCTCATGTTCTAATCGTCTAACATCAATCTATTTAACAAAACATTTTAGACTA

Protein sequence

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MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGVYTGQFSTFALCGFIRAQGDADSALDRLWQKKKIDVRQQ

Tan0000626 (gene) of Snake gourd v1 genome