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Tan0000635 (gene) of Snake gourd v1 genome

Gene IDTan0000635
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionDynein light chain
Genome locationLG06:79344179..79347302
RNA-Seq ExpressionTan0000635
SyntenyTan0000635
Gene Ontology termsGO:0007017 - microtubule-based process (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005874 - microtubule (cellular component)
GO:0030286 - dynein complex (cellular component)
GO:0045505 - dynein intermediate chain binding (molecular function)
GO:0051959 - dynein light intermediate chain binding (molecular function)
InterPro domainsIPR001372 - Dynein light chain, type 1/2
IPR019763 - Dynein light chain, type 1/2, conserved site
IPR037177 - Dynein light chain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008458417.1 PREDICTED: dynein light chain 1, cytoplasmic [Cucumis melo]7.8e-5595.73Show/hide
Query:  MSNDAKRSIQGNLMVKSVSEDRKPPAAT-TGKKIVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
        MSNDAKRSIQGNLMVKSVSEDRKPPA T TGKKIVIKSADMFGDVQKEA+DVAIAAFEKHSVEKD+AE IKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
Subjt:  MSNDAKRSIQGNLMVKSVSEDRKPPAAT-TGKKIVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH

Query:  FVYFYLDQKAVLLFKSG
        FVYFYLDQKAVLLFKSG
Subjt:  FVYFYLDQKAVLLFKSG

XP_022959519.1 dynein light chain 1, cytoplasmic-like [Cucurbita moschata]2.7e-5597.44Show/hide
Query:  MSNDAKRSIQGNLMVKSVSEDRKPPA-ATTGKKIVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
        MSNDAKRSIQGNLMVKSVSEDRKP A ATTGKKIVIKSADMFGDVQKEA+DVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
Subjt:  MSNDAKRSIQGNLMVKSVSEDRKPPA-ATTGKKIVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH

Query:  FVYFYLDQKAVLLFKSG
        FVYFYLDQKAVLLFKSG
Subjt:  FVYFYLDQKAVLLFKSG

XP_023006429.1 dynein light chain 1, cytoplasmic [Cucurbita maxima]7.8e-5596.58Show/hide
Query:  MSNDAKRSIQGNLMVKSVSEDRKP-PAATTGKKIVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
        MSNDAKRSIQGNLMVKSVSEDRKP   ATTGKKIVIKSADMFGDVQKEA+DVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
Subjt:  MSNDAKRSIQGNLMVKSVSEDRKP-PAATTGKKIVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH

Query:  FVYFYLDQKAVLLFKSG
        FVYFYLDQKAVLLFKSG
Subjt:  FVYFYLDQKAVLLFKSG

XP_023513722.1 dynein light chain 1, cytoplasmic-like [Cucurbita pepo subsp. pepo]2.3e-5496.58Show/hide
Query:  MSNDAKRSIQGNLMVKSVSEDRKPPA-ATTGKKIVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
        MSNDAKRSIQGN MVKSVSEDRKP A ATTGKKIVIKSADMFGDVQKEAVDVAI AFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
Subjt:  MSNDAKRSIQGNLMVKSVSEDRKPPA-ATTGKKIVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH

Query:  FVYFYLDQKAVLLFKSG
        FVYFYLDQKAVLLFKSG
Subjt:  FVYFYLDQKAVLLFKSG

XP_038906782.1 dynein light chain 1, cytoplasmic-like [Benincasa hispida]7.8e-5595.73Show/hide
Query:  MSNDAKRSIQGNLMVKSVSEDRKPPA-ATTGKKIVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
        MSNDAKRSIQGNLMVKSVSEDRKPPA ATTGKKIVIKSADMFGDVQKEA++VAIAAFEKHSVEKD+AE IKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
Subjt:  MSNDAKRSIQGNLMVKSVSEDRKPPA-ATTGKKIVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH

Query:  FVYFYLDQKAVLLFKSG
        FVYFYLDQKAVLLFKSG
Subjt:  FVYFYLDQKAVLLFKSG

TrEMBL top hitse value%identityAlignment
A0A1S3C7T8 Dynein light chain3.8e-5595.73Show/hide
Query:  MSNDAKRSIQGNLMVKSVSEDRKPPAAT-TGKKIVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
        MSNDAKRSIQGNLMVKSVSEDRKPPA T TGKKIVIKSADMFGDVQKEA+DVAIAAFEKHSVEKD+AE IKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
Subjt:  MSNDAKRSIQGNLMVKSVSEDRKPPAAT-TGKKIVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH

Query:  FVYFYLDQKAVLLFKSG
        FVYFYLDQKAVLLFKSG
Subjt:  FVYFYLDQKAVLLFKSG

A0A6J1EQC6 Dynein light chain2.4e-5495.73Show/hide
Query:  MSNDAKRSIQGNLMVKSVSEDRKPPA-ATTGKKIVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
        MSNDAKRSIQGN MVK+VSEDRKP A ATTGKKIVIKSADMFGDVQKEAVDVAI AFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
Subjt:  MSNDAKRSIQGNLMVKSVSEDRKPPA-ATTGKKIVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH

Query:  FVYFYLDQKAVLLFKSG
        FVYFYLDQKAVLLFKSG
Subjt:  FVYFYLDQKAVLLFKSG

A0A6J1H8A5 Dynein light chain1.3e-5597.44Show/hide
Query:  MSNDAKRSIQGNLMVKSVSEDRKPPA-ATTGKKIVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
        MSNDAKRSIQGNLMVKSVSEDRKP A ATTGKKIVIKSADMFGDVQKEA+DVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
Subjt:  MSNDAKRSIQGNLMVKSVSEDRKPPA-ATTGKKIVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH

Query:  FVYFYLDQKAVLLFKSG
        FVYFYLDQKAVLLFKSG
Subjt:  FVYFYLDQKAVLLFKSG

A0A6J1KH59 Dynein light chain3.2e-5494.87Show/hide
Query:  MSNDAKRSIQGNLMVKSVSEDRKPPA-ATTGKKIVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
        MSNDAKRSIQGN MVK+VSEDRKP A ATTGKKIVIKSADMFGDVQKEAVD+AI AFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
Subjt:  MSNDAKRSIQGNLMVKSVSEDRKPPA-ATTGKKIVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH

Query:  FVYFYLDQKAVLLFKSG
        FVYFYLDQKAVLLFKSG
Subjt:  FVYFYLDQKAVLLFKSG

A0A6J1L253 Dynein light chain3.8e-5596.58Show/hide
Query:  MSNDAKRSIQGNLMVKSVSEDRKP-PAATTGKKIVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
        MSNDAKRSIQGNLMVKSVSEDRKP   ATTGKKIVIKSADMFGDVQKEA+DVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
Subjt:  MSNDAKRSIQGNLMVKSVSEDRKP-PAATTGKKIVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH

Query:  FVYFYLDQKAVLLFKSG
        FVYFYLDQKAVLLFKSG
Subjt:  FVYFYLDQKAVLLFKSG

SwissProt top hitse value%identityAlignment
Q22799 Dynein light chain 1, cytoplasmic4.8e-3169.77Show/hide
Query:  KKIVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG
        +K VIK+ADM  D+Q++A+D A  A EK+++EKD+A YIKKEFDK++ PTWHCIVGRNFGSYVTHET HF+YFYL Q A+LLFKSG
Subjt:  KKIVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG

Q3MHR3 Dynein light chain 2, cytoplasmic4.8e-3170.93Show/hide
Query:  KKIVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG
        +K VIK+ADM  D+Q++AVD A  A EK+++EKD+A YIKKEFDK++ PTWHCIVGRNFGSYVTHET HF+YFYL Q A+LLFKSG
Subjt:  KKIVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG

Q78P75 Dynein light chain 2, cytoplasmic4.8e-3170.93Show/hide
Query:  KKIVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG
        +K VIK+ADM  D+Q++AVD A  A EK+++EKD+A YIKKEFDK++ PTWHCIVGRNFGSYVTHET HF+YFYL Q A+LLFKSG
Subjt:  KKIVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG

Q96FJ2 Dynein light chain 2, cytoplasmic4.8e-3170.93Show/hide
Query:  KKIVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG
        +K VIK+ADM  D+Q++AVD A  A EK+++EKD+A YIKKEFDK++ PTWHCIVGRNFGSYVTHET HF+YFYL Q A+LLFKSG
Subjt:  KKIVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG

Q9D0M5 Dynein light chain 2, cytoplasmic4.8e-3170.93Show/hide
Query:  KKIVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG
        +K VIK+ADM  D+Q++AVD A  A EK+++EKD+A YIKKEFDK++ PTWHCIVGRNFGSYVTHET HF+YFYL Q A+LLFKSG
Subjt:  KKIVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG

Arabidopsis top hitse value%identityAlignment
AT1G23220.1 Dynein light chain type 1 family protein1.2e-1358.49Show/hide
Query:  KDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKS
        K +A  +KK+FD  +GP WHCIVG +FGSYVTH T  F+YF +D+  VLLFK+
Subjt:  KDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKS

AT1G52240.2 RHO guanyl-nucleotide exchange factor 111.1e-1140Show/hide
Query:  KIVIKSADMFGDVQKEAVDVAIAAFEKHSVE--KDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFK
        K +++ +DM   +Q +A+  A  A +   V   K +A +IKKEFD+R+G  W C+VG NFG + TH    F+YF L+    L+FK
Subjt:  KIVIKSADMFGDVQKEAVDVAIAAFEKHSVE--KDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFK

AT4G15930.1 Dynein light chain type 1 family protein2.0e-4067.5Show/hide
Query:  KRSIQGNLMVKSVSEDRK---------PPAATTGKKIVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHE
        K+S+ G    +++ +DR+         PPA   GK+ VIKSADM  D+QKEA+++AI+AFEK+SVEKD+AE IKKEFDK+HG TWHCIVGRNFGSYVTHE
Subjt:  KRSIQGNLMVKSVSEDRK---------PPAATTGKKIVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHE

Query:  TNHFVYFYLDQKAVLLFKSG
        TNHFVYFYLDQKAVLLFKSG
Subjt:  TNHFVYFYLDQKAVLLFKSG

AT4G27360.1 Dynein light chain type 1 family protein4.3e-1138.82Show/hide
Query:  KIVIKSADMFGDVQKEAVDVAIAAFEKHSVEK--DVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFK
        K V+   DM   ++++A+ +A  A +   V +   +A +IKKEFD+ +G  W CIVG +FGS+VTH +  F++F +    +LLFK
Subjt:  KIVIKSADMFGDVQKEAVDVAIAAFEKHSVEK--DVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFK

AT5G20110.1 Dynein light chain type 1 family protein8.4e-1544.14Show/hide
Query:  QGNLMVKSVSED--RKPPAATTGKKIVIKSADMFGDVQKEAVDVA---IAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFY
        +G   V  V  D   +  AA     + I +ADM G +Q  A   A   + + EK S  K +A  +KKEFDK +GP WHCIVG +FGS+VTH T  F+YF 
Subjt:  QGNLMVKSVSED--RKPPAATTGKKIVIKSADMFGDVQKEAVDVA---IAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFY

Query:  LDQKAVLLFKS
        +D+  VLLFK+
Subjt:  LDQKAVLLFKS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCAACGATGCAAAGAGAAGCATTCAAGGGAATCTAATGGTGAAATCTGTATCGGAAGATCGGAAACCGCCGGCGGCGACTACCGGCAAGAAAATTGTCATTAAGAG
TGCCGATATGTTTGGTGATGTGCAGAAGGAGGCTGTTGATGTCGCCATAGCGGCATTTGAAAAGCATAGTGTAGAGAAGGATGTAGCGGAGTATATTAAGAAAGAGTTCG
ATAAGAGGCATGGACCGACCTGGCATTGCATTGTTGGCCGTAATTTTGGTTCATACGTGACACACGAGACAAACCACTTTGTTTACTTCTACTTGGATCAGAAAGCAGTT
TTACTATTCAAATCAGGTTGA
mRNA sequenceShow/hide mRNA sequence
CGAACGGTAGGTGGTGAGAAAGGGCAGTAACGACAGTAAAGTAGAGCACACTTCTGGTTCTTCAGCTGAAATAACTCTTGACGAAACGACGGCGTATTGCCAGCTGTACC
AGAGAACTAATTTCACCGACGGCTCCATTAGAGACAGATTGCAAAAGCTGCAATAAATTCCAGAAAGAGTTAAATCTTTTATCCTCTCAGATTCTGAGAAATCACGAGCT
TCGCTTACAATTTCCAGTCAAAGGATAAAGTAATTCCAAATTTCTCGAAGAGAAAAAGTTCCAGAGATTGTGAAAAAGCTCCTTTCATCGGAGCCTCCACCTACCGAATC
GGCGCCGGAGATCGGTGAAGAAGCAGGAAAATGAGCAACGATGCAAAGAGAAGCATTCAAGGGAATCTAATGGTGAAATCTGTATCGGAAGATCGGAAACCGCCGGCGGC
GACTACCGGCAAGAAAATTGTCATTAAGAGTGCCGATATGTTTGGTGATGTGCAGAAGGAGGCTGTTGATGTCGCCATAGCGGCATTTGAAAAGCATAGTGTAGAGAAGG
ATGTAGCGGAGTATATTAAGAAAGAGTTCGATAAGAGGCATGGACCGACCTGGCATTGCATTGTTGGCCGTAATTTTGGTTCATACGTGACACACGAGACAAACCACTTT
GTTTACTTCTACTTGGATCAGAAAGCAGTTTTACTATTCAAATCAGGTTGATAAATATGTATATTATGCAGATTAATGAATCTTATTTAACTGATTATGATCATCGTGAT
TTAATCAAATGATGATATCCTTGTGGACAAGACAGTCTTCTCTTCTGCAACCTCTTCTTTTTTACCTTATCTAATGATTTTGGTCAAGCCTCTTTAGCCTTTAAAGTAGA
CATAA
Protein sequenceShow/hide protein sequence
MSNDAKRSIQGNLMVKSVSEDRKPPAATTGKKIVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAV
LLFKSG