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Tan0000653 (gene) of Snake gourd v1 genome

Gene IDTan0000653
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionCCHC-type domain-containing protein
Genome locationLG04:69787423..69790240
RNA-Seq ExpressionTan0000653
SyntenyTan0000653
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR025836 - Zinc knuckle CX2CX4HX4C
IPR036875 - Zinc finger, CCHC-type superfamily
IPR040256 - Uncharacterized protein At4g02000-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
BAS74010.1 Os01g0714300 [Oryza sativa Japonica Group]2.6e-1443.68Show/hide
Query:  KAIGNSIGTFMDVETDENDECAGDSLRIKVKFDIQKPLCRGTNIKVGSMAEEVWYPITYEKLQEFCYRCSRLGHVYKDCKEQQDKLE
        KAIG+ +GTF++++ DEN    G  LRIK++ DI+KPL RG  + +G   + +W P+ YE L +FCY C  +GH  K C+++  K E
Subjt:  KAIGNSIGTFMDVETDENDECAGDSLRIKVKFDIQKPLCRGTNIKVGSMAEEVWYPITYEKLQEFCYRCSRLGHVYKDCKEQQDKLE

CAD6257659.1 unnamed protein product [Miscanthus lutarioriparius]1.2e-1446.67Show/hide
Query:  AKAIGNSIGTFMDVETDENDECAGDSLRIKVKFDIQKPLCRGTNIKVGSMAEEVWYPITYEKLQEFCYRCSRLGHVYKDCKEQQDKLEGA
        A+AIG+ +G FM+V+ D +D  AG  LR+KV+ DI+KPLCRG    +G    + W PITYE   +FCY C  +GHV + C ++  K E A
Subjt:  AKAIGNSIGTFMDVETDENDECAGDSLRIKVKFDIQKPLCRGTNIKVGSMAEEVWYPITYEKLQEFCYRCSRLGHVYKDCKEQQDKLEGA

CAD6340009.1 unnamed protein product [Miscanthus lutarioriparius]3.4e-1440.15Show/hide
Query:  AKAIGNSIGTFMDVETDENDECAGDSLRIKVKFDIQKPLCRGTNIKVGSMAEEVWYPITYEKLQEFCYRCSRLGHVYKDCKEQQDKLEGATREVSVSGKG
        AK IG+ +G FM+VE D     AG SLR+K++ DIQKPL  G    +G+   E W PITYE L +FCY C R+GHV + C ++  K E     V  SG+ 
Subjt:  AKAIGNSIGTFMDVETDENDECAGDSLRIKVKFDIQKPLCRGTNIKVGSMAEEVWYPITYEKLQEFCYRCSRLGHVYKDCKEQQDKLEGATREVSVSGKG

Query:  R--------SNLQNSRGVYATQARKKDEEDSQ
        R        S     +G       KKD E+++
Subjt:  R--------SNLQNSRGVYATQARKKDEEDSQ

XP_022132681.1 uncharacterized protein LOC111005481 [Momordica charantia]1.3e-1345.12Show/hide
Query:  AKAIGNSIGTFMDVETDENDECAGDSLRIKVKFDIQKPLCRGTNIKVGSMAEEVWYPITYEKLQEFCYRCSRLGHVYKDCKE
        A  +GN+IG F DVE++ N+ C G  LR++V+FD+ KPL RG  + +       W PI YE+L +F Y C RL H+ KDC +
Subjt:  AKAIGNSIGTFMDVETDENDECAGDSLRIKVKFDIQKPLCRGTNIKVGSMAEEVWYPITYEKLQEFCYRCSRLGHVYKDCKE

XP_039815069.1 uncharacterized protein LOC120677956 [Panicum virgatum]3.4e-1444.68Show/hide
Query:  KAIGNSIGTFMDVETDENDECAGDSLRIKVKFDIQKPLCRGTNIKVGSMAEEVWYPITYEKLQEFCYRCSRLGHVYKDCKEQQDKLEGATREVS
        +AIG  IGTFM ++ DE+D   G  LRIKV+ DI+KPL RG  + VG   + +W P+ YE L +FCY C  +GH  K C+ + ++  G T++ S
Subjt:  KAIGNSIGTFMDVETDENDECAGDSLRIKVKFDIQKPLCRGTNIKVGSMAEEVWYPITYEKLQEFCYRCSRLGHVYKDCKEQQDKLEGATREVS

TrEMBL top hitse value%identityAlignment
A0A0A0LNB5 CCHC-type domain-containing protein2.4e-1345.05Show/hide
Query:  KWAKAIGNSIGTFMDVETDENDECAGDSLRIKVKFDIQKPLCRGTNIKVGSMAEEVWYPITYEKLQEFCYRCSRLGHVYKDCKEQQDKLEG
        K+  A+ NSI +F +VE  E     G+ L+++ K D+Q+ L   TNIK+G+MA+E   P+TYEKL +FCY C  LGHV ++C   + K+EG
Subjt:  KWAKAIGNSIGTFMDVETDENDECAGDSLRIKVKFDIQKPLCRGTNIKVGSMAEEVWYPITYEKLQEFCYRCSRLGHVYKDCKEQQDKLEG

A0A0P0V7D8 Os01g0714300 protein1.3e-1443.68Show/hide
Query:  KAIGNSIGTFMDVETDENDECAGDSLRIKVKFDIQKPLCRGTNIKVGSMAEEVWYPITYEKLQEFCYRCSRLGHVYKDCKEQQDKLE
        KAIG+ +GTF++++ DEN    G  LRIK++ DI+KPL RG  + +G   + +W P+ YE L +FCY C  +GH  K C+++  K E
Subjt:  KAIGNSIGTFMDVETDENDECAGDSLRIKVKFDIQKPLCRGTNIKVGSMAEEVWYPITYEKLQEFCYRCSRLGHVYKDCKEQQDKLE

A0A2T7EQ43 CCHC-type domain-containing protein3.1e-1343.75Show/hide
Query:  KAIGNSIGTFMDVETDENDECAGDSLRIKVKFDIQKPLCRGTNIKVGSMAEEVWYPITYEKLQEFCYRCSRLGHVYKDCK
        K+IG+ +G FM +E ++++   G  L IK K DI+KPL RG  + VG   + +W P+ YE L +FCY C R+GH+ K C+
Subjt:  KAIGNSIGTFMDVETDENDECAGDSLRIKVKFDIQKPLCRGTNIKVGSMAEEVWYPITYEKLQEFCYRCSRLGHVYKDCK

A0A6J1BSZ1 uncharacterized protein LOC1110054816.3e-1445.12Show/hide
Query:  AKAIGNSIGTFMDVETDENDECAGDSLRIKVKFDIQKPLCRGTNIKVGSMAEEVWYPITYEKLQEFCYRCSRLGHVYKDCKE
        A  +GN+IG F DVE++ N+ C G  LR++V+FD+ KPL RG  + +       W PI YE+L +F Y C RL H+ KDC +
Subjt:  AKAIGNSIGTFMDVETDENDECAGDSLRIKVKFDIQKPLCRGTNIKVGSMAEEVWYPITYEKLQEFCYRCSRLGHVYKDCKE

A0A803Q6Y1 Uncharacterized protein3.1e-1348.75Show/hide
Query:  AKAIGNSIGTFMDVETDENDECAGDSLRIKVKFDIQKPLCRGTNIKVGSMAEEVWYPITYEKLQEFCYRCSRLGHVYKDC
        AKA+GN IG FM+V TD  +E  G  LRI+VK D+ KPL RG NI++  + ++ W    YE+L E+C  C  LGH Y+ C
Subjt:  AKAIGNSIGTFMDVETDENDECAGDSLRIKVKFDIQKPLCRGTNIKVGSMAEEVWYPITYEKLQEFCYRCSRLGHVYKDC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTGTCGTCTCTTTTGTGGTTTGGAAATGGGCTAAGGCGATCGGGAACTCCATAGGGACCTTTATGGACGTTGAAACTGATGAAAATGATGAATGTGCGGGAGACTC
CCTAAGGATAAAAGTCAAGTTCGATATACAAAAACCCTTATGCAGGGGAACTAACATAAAGGTAGGATCCATGGCTGAGGAAGTCTGGTACCCGATAACTTACGAGAAAC
TGCAGGAATTCTGTTATCGGTGTAGCAGACTGGGGCATGTGTATAAGGATTGTAAGGAACAACAAGACAAGCTAGAAGGCGCAACTCGGGAAGTAAGTGTTAGTGGCAAA
GGGCGATCTAATTTGCAAAACAGTAGAGGCGTTTACGCAACTCAAGCAAGGAAGAAAGACGAAGAAGACTCTCAAACAGATAAAAATCTCCCTTCATTTTCCGACACTGG
TTCCGGCGAGGATGACAACAGTCGTGAGGACGTCAGTACGGAAAAGGAAAAGTTACACGGGGAGAAGGAGTGTGAAAGTACACATAATCATCATAACAGTAGTACTGAAA
AGGATTGTCACATCTGTATATCTAGTCAGGGTATGTGGATTAGGTTTGTTGAGGAGGCCACGCTTGTTACCGTTGGGAGGAAAATGGAGGCTATGAATGATGGAGTTTTA
GGAAAAGGAATAAAAGGAGAAAAGGTTAACGAACCTATCAAGCCAGACTCAGCAGAGTCTAAGGAGCTTATGTCGAACAAACCTAAAGGGAAATGGCTAAAAACTTGGAA
GCGACAAACAAAAACAAAACTGGTTGGAATAAGGAAAATGACATACAAACTCAACCATTATTGGTTAGGAAACACAAAGAAGGGAGGGGGGGGGGGGAAGAGGTCGAACA
TGGTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTTGTCGTCTCTTTTGTGGTTTGGAAATGGGCTAAGGCGATCGGGAACTCCATAGGGACCTTTATGGACGTTGAAACTGATGAAAATGATGAATGTGCGGGAGACTC
CCTAAGGATAAAAGTCAAGTTCGATATACAAAAACCCTTATGCAGGGGAACTAACATAAAGGTAGGATCCATGGCTGAGGAAGTCTGGTACCCGATAACTTACGAGAAAC
TGCAGGAATTCTGTTATCGGTGTAGCAGACTGGGGCATGTGTATAAGGATTGTAAGGAACAACAAGACAAGCTAGAAGGCGCAACTCGGGAAGTAAGTGTTAGTGGCAAA
GGGCGATCTAATTTGCAAAACAGTAGAGGCGTTTACGCAACTCAAGCAAGGAAGAAAGACGAAGAAGACTCTCAAACAGATAAAAATCTCCCTTCATTTTCCGACACTGG
TTCCGGCGAGGATGACAACAGTCGTGAGGACGTCAGTACGGAAAAGGAAAAGTTACACGGGGAGAAGGAGTGTGAAAGTACACATAATCATCATAACAGTAGTACTGAAA
AGGATTGTCACATCTGTATATCTAGTCAGGGTATGTGGATTAGGTTTGTTGAGGAGGCCACGCTTGTTACCGTTGGGAGGAAAATGGAGGCTATGAATGATGGAGTTTTA
GGAAAAGGAATAAAAGGAGAAAAGGTTAACGAACCTATCAAGCCAGACTCAGCAGAGTCTAAGGAGCTTATGTCGAACAAACCTAAAGGGAAATGGCTAAAAACTTGGAA
GCGACAAACAAAAACAAAACTGGTTGGAATAAGGAAAATGACATACAAACTCAACCATTATTGGTTAGGAAACACAAAGAAGGGAGGGGGGGGGGGGAAGAGGTCGAACA
TGGTGTGA
Protein sequenceShow/hide protein sequence
MVVVSFVVWKWAKAIGNSIGTFMDVETDENDECAGDSLRIKVKFDIQKPLCRGTNIKVGSMAEEVWYPITYEKLQEFCYRCSRLGHVYKDCKEQQDKLEGATREVSVSGK
GRSNLQNSRGVYATQARKKDEEDSQTDKNLPSFSDTGSGEDDNSREDVSTEKEKLHGEKECESTHNHHNSSTEKDCHICISSQGMWIRFVEEATLVTVGRKMEAMNDGVL
GKGIKGEKVNEPIKPDSAESKELMSNKPKGKWLKTWKRQTKTKLVGIRKMTYKLNHYWLGNTKKGGGGGKRSNMV